FFCP PHASE1:Hg19::chr19:45240829..45240845,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:45240829..45240845,+ | |||
|coexpression_cluster_id=C5 | |coexpression_cluster_id=C5 | ||
|description=CAGE_peak_at_chr19:45240829..45240845,+ | |description=CAGE_peak_at_chr19:45240829..45240845,+ | ||
|id=chr19:45240829..45240845,+ | |id=chr19:45240829..45240845,+ | ||
|ontology_enrichment_celltype=CL:0000453!4.55e-13!5;CL:0002057!2.02e-11!42;CL:0000860!2.28e-10!45;CL:0000990!1.39e-09!8;CL:0002009!9.82e-09!65;CL:0000557!1.59e-08!71;CL:0000451!1.13e-07!10;CL:0000766!1.68e-07!76;CL:0002194!5.90e-07!63;CL:0000576!5.90e-07!63;CL:0000040!5.90e-07!63;CL:0000559!5.90e-07!63;CL:0000763!6.22e-07!112;CL:0000049!6.22e-07!112 | |ontology_enrichment_celltype=CL:0000453!4.55e-13!5;CL:0002057!2.02e-11!42;CL:0000860!2.28e-10!45;CL:0000990!1.39e-09!8;CL:0002009!9.82e-09!65;CL:0000557!1.59e-08!71;CL:0000451!1.13e-07!10;CL:0000766!1.68e-07!76;CL:0002194!5.90e-07!63;CL:0000576!5.90e-07!63;CL:0000040!5.90e-07!63;CL:0000559!5.90e-07!63;CL:0000763!6.22e-07!112;CL:0000049!6.22e-07!112 | ||
|ontology_enrichment_celltype_v019=CL:0000453;7.86e-42;5!CL:0000990;3.05e-23;8!CL:0000451;5.26e-19;10!CL:0001014;3.44e-18;2!CL:0001016;3.44e-18;2!CL:0000319;6.31e-10;1!CL:0000182;6.05e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000453,6.37e-42,5;CL:0000990,2.72e-23,8;CL:0000451,4.79e-19,10;CL:0001014,3.16e-18,2;CL:0001016,3.16e-18,2;CL:0000319,6.88e-10,1;CL:0000182,5.52e-07,12 | |||
|ontology_enrichment_development_v019=UBERON:0005754;6.31e-10;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3030;6.31e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,6.88e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0002405!2.21e-12!115;UBERON:0001474!1.02e-09!86;UBERON:0002390!2.21e-09!102;UBERON:0003061!2.21e-09!102;UBERON:0002371!9.62e-09!80;UBERON:0004765!3.51e-08!101;UBERON:0001434!3.51e-08!101;UBERON:0002193!5.97e-08!112;UBERON:0006947!9.94e-08!3;UBERON:0004054!9.94e-08!3;UBERON:0005057!6.08e-07!26 | |ontology_enrichment_uberon=UBERON:0002405!2.21e-12!115;UBERON:0001474!1.02e-09!86;UBERON:0002390!2.21e-09!102;UBERON:0003061!2.21e-09!102;UBERON:0002371!9.62e-09!80;UBERON:0004765!3.51e-08!101;UBERON:0001434!3.51e-08!101;UBERON:0002193!5.97e-08!112;UBERON:0006947!9.94e-08!3;UBERON:0004054!9.94e-08!3;UBERON:0005057!6.08e-07!26 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;4.11e-11;19!UBERON:0006925;4.11e-11;19!UBERON:0000998;6.31e-10;1!UBERON:0006868;6.31e-10;1!UBERON:0002423;2.12e-08;25!UBERON:0002365;9.69e-07;31!UBERON:0002330;9.69e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.62e-11,19;UBERON:0006925,3.62e-11,19;UBERON:0008836,3.62e-11,19;UBERON:0000998,6.31e-10,1;UBERON:0006868,6.31e-10,1;UBERON:0008835,1.28e-09,22;UBERON:0003894,1.28e-09,22;UBERON:0009854,3.41e-09,23;UBERON:0007499,1.93e-08,25;UBERON:0009497,1.93e-08,25;UBERON:0000015,1.93e-08,25;UBERON:0002423,1.93e-08,25;UBERON:0006235,1.93e-08,25;UBERON:0004161,1.93e-08,25;UBERON:0009856,4.15e-08,26;UBERON:0005172,5.97e-07,54;UBERON:0005173,5.97e-07,54;UBERON:0002365,9.15e-07,31;UBERON:0002330,9.15e-07,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492484232307152,0,0.313454721478088,0,0,0,0,0,0,0.393364276848904,0,0.619264493264304,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,0,0,0,0,0,0.485168122375632,0,0,0,0.28769239232215,0.768482119587302,0.709446689665756,0.344745680736619,0,0,0,0,0.674170453335254,0,0.641858054152187,0.639337125799041,0,0.199463657621632,1.27867425159808,0,0,0,0.251248665256743,1.0429658368404,1.08594422352558,0,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300476117813194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.7457048750563,1.96565443335525,25.4039659873004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0.232420756919918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.33953315142039,1.19040304263846,2.0627374980147,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0,0,0,0,0,0.62962469366128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50630081242847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.96646973608167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0,0.227884111694002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.789168805698781,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0.203996435272644,0,0,0,0,0,0,0.279282401272254,0,0.717873024576814,0.199679000498991,0,0,0.134366944973453,0,0,0,0,0,0.393709926058995,0,0,0,0,0,0,5.17439950568451,3.86900977278975,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,11.5776264605685,2.65013777824443,0,0,2.56630256826494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,0,0,0,0.149254802886874,0.467426619694449,0.554805861502613,0.189403005275089,0.251567901752575,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0.150257608997218,0,0.813741466409323,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,2.53318401491205,1.86010776438708,2.45348091383766,0,3.44082072255207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300841313397029,1.0085253435176,7.81514011233093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,1.29556554731173,0,0,0,0,0,0,0,0,0,0,0,0,3.81048345171836,0,0,0,0.111855431797792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0.297046400327086,0,0,0.0939839179798536,0.193373663920732,0,0.178553938605658,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0.190941474834495,0.202117188958219,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492484232307152,0,0.313454721478088,0,0,0,0,0,0,0.393364276848904,0,0.619264493264304,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,0,0,0,0,0,0.485168122375632,0,0,0,0.28769239232215,0.768482119587302,0.709446689665756,0.344745680736619,0,0,0,0,0.674170453335254,0,0.641858054152187,0.639337125799041,0,0.199463657621632,1.27867425159808,0,0,0,0.251248665256743,1.0429658368404,1.08594422352558,0,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300476117813194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.7457048750563,1.96565443335525,25.4039659873004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0.232420756919918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.33953315142039,1.19040304263846,2.0627374980147,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0,0,0,0,0,0.62962469366128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50630081242847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.96646973608167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0,0.227884111694002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.789168805698781,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0.203996435272644,0,0,0,0,0,0,0.279282401272254,0,0.717873024576814,0.199679000498991,0,0,0.134366944973453,0,0,0,0,0,0.393709926058995,0,0,0,0,0,0,5.17439950568451,3.86900977278975,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,11.5776264605685,2.65013777824443,0,0,2.56630256826494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,0,0,0,0.149254802886874,0.467426619694449,0.554805861502613,0.189403005275089,0.251567901752575,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0.150257608997218,0,0.813741466409323,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,2.53318401491205,1.86010776438708,2.45348091383766,0,3.44082072255207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300841313397029,1.0085253435176,7.81514011233093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,1.29556554731173,0,0,0,0,0,0,0,0,0,0,0,0,3.81048345171836,0,0,0,0.111855431797792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0.297046400327086,0,0,0.0939839179798536,0.193373663920732,0,0.178553938605658,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0.190941474834495,0.202117188958219,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr19:45240829..45240845,+ | |short_description=p@chr19:45240829..45240845,+ | ||
}} | }} |
Latest revision as of 14:41, 27 July 2015
Short description: | p@chr19:45240829..45240845, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:45240829..45240845, + |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 6.37e-42 | 5 |
conventional dendritic cell | 2.72e-23 | 8 |
dendritic cell | 4.79e-19 | 10 |
CD1a-positive Langerhans cell | 3.16e-18 | 2 |
immature CD1a-positive Langerhans cell | 3.16e-18 | 2 |
mucus secreting cell | 6.88e-10 | 1 |
hepatocyte | 5.52e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 3.62e-11 | 19 |
digestive gland | 3.62e-11 | 19 |
liver bud | 3.62e-11 | 19 |
seminal vesicle | 6.31e-10 | 1 |
seminal fluid secreting gland | 6.31e-10 | 1 |
hepatic diverticulum | 1.28e-09 | 22 |
liver primordium | 1.28e-09 | 22 |
digestive tract diverticulum | 3.41e-09 | 23 |
epithelial sac | 1.93e-08 | 25 |
epithelium of foregut-midgut junction | 1.93e-08 | 25 |
anatomical boundary | 1.93e-08 | 25 |
hepatobiliary system | 1.93e-08 | 25 |
foregut-midgut junction | 1.93e-08 | 25 |
septum transversum | 1.93e-08 | 25 |
sac | 4.15e-08 | 26 |
abdomen element | 5.97e-07 | 54 |
abdominal segment element | 5.97e-07 | 54 |
exocrine gland | 9.15e-07 | 31 |
exocrine system | 9.15e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 6.88e-10 | 1 |