FFCP PHASE1:Hg19::chr1:209823405..209823427,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:209823405..209823427,- to FFCP PHASE1:Hg19::chr1:209823405..209823427,-: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:209823405..209823427,- | |||
|coexpression_cluster_id=C571 | |||
|description=CAGE_peak_at_chr1:209823405..209823427,- | |||
|id=chr1:209823405..209823427,- | |||
|ontology_enrichment_celltype=CL:0002076!1.04e-28!43;CL:0000066!1.21e-23!254;CL:0000223!2.80e-18!59;CL:0002368!4.58e-16!13;CL:0002251!4.63e-12!21;CL:0002159!3.96e-10!13;CL:0002202!7.35e-10!9;CL:0002632!7.35e-10!9;CL:0000244!2.79e-08!4;CL:0000731!2.79e-08!4;CL:0000063!5.85e-08!578;CL:0002328!7.82e-07!3;CL:0000068!8.41e-07!3;CL:0000069!8.41e-07!3;CL:0000307!8.41e-07!3;CL:0000377!8.41e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002368;2.34e-35;13!CL:0000244;1.31e-23;4!CL:0000731;1.31e-23;4!CL:0002202;2.11e-23;9!CL:0002632;2.11e-23;9!CL:0002159;6.56e-19;14!CL:0002328;9.42e-19;3!CL:0000307;2.15e-18;3!CL:0002076;1.03e-17;42!CL:0000312;1.21e-10;5!CL:0000362;3.88e-10;9!CL:0002231;5.80e-09;3!CL:0000240;5.96e-09;6!CL:0000311;5.96e-09;6!CL:0000079;5.96e-09;6!CL:0000237;5.96e-09;6!CL:0002166;1.08e-08;3!CL:0002077;1.14e-08;34!CL:0002621;1.33e-08;3!CL:0002379;6.48e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,1.26e-35,13;CL:0002076,1.61e-24,42;CL:0002202,1.50e-23,9;CL:0002632,1.50e-23,9;CL:0000244,1.92e-23,4;CL:0000731,1.92e-23,4;CL:0002328,9.74e-19,3;CL:0002159,1.04e-18,14;CL:0000068,1.23e-18,3;CL:0000069,1.23e-18,3;CL:0000307,1.23e-18,3;CL:0000377,1.23e-18,3;CL:0000223,6.00e-17,58;CL:0000066,8.45e-15,253;CL:0000312,1.38e-10,5;CL:0000362,4.61e-10,9;CL:0002077,2.19e-09,34;CL:0002231,5.47e-09,3;CL:0000240,6.67e-09,6;CL:0000311,6.67e-09,6;CL:0000079,6.67e-09,6;CL:0000237,6.67e-09,6;CL:0000036,6.67e-09,6;CL:0000357,6.67e-09,6;CL:0000114,6.67e-09,6;CL:0002166,1.15e-08,3;CL:0002621,1.44e-08,3;CL:0002321,3.29e-08,250;CL:0002379,4.57e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000377;2.15e-18;3!CL:0000223;4.58e-11;58!CL:0000357;5.96e-09;6!CL:0000114;5.96e-09;6 | |||
|ontology_enrichment_disease=DOID:305!5.56e-08!106;DOID:1749!2.63e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:3620;6.48e-07;1!DOID:3565;6.48e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3620,4.57e-07,1;DOID:3565,4.57e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.15e-11!169;UBERON:0000925!1.15e-11!169;UBERON:0006595!1.15e-11!169;UBERON:0000365!2.00e-09!5;UBERON:0007196!5.50e-09!14;UBERON:0001558!5.50e-09!14;UBERON:0001004!8.55e-09!72;UBERON:0005631!2.54e-08!14;UBERON:0000158!2.54e-08!14;UBERON:0005910!9.65e-08!6;UBERON:0000065!1.19e-07!53;UBERON:0004815!7.82e-07!3;UBERON:0002031!7.82e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;6.25e-19;5!UBERON:0004815;9.42e-19;3!UBERON:0002031;9.42e-19;3!UBERON:0000486;6.63e-17;12!UBERON:0005910;8.31e-16;6!UBERON:0007196;8.06e-14;15!UBERON:0001558;8.06e-14;15!UBERON:0002185;1.86e-11;5!UBERON:0005911;9.84e-10;36!UBERON:0005631;3.89e-09;10!UBERON:0000158;3.89e-09;10!UBERON:0001949;1.33e-08;3!UBERON:0000485;2.61e-08;7!UBERON:0003126;3.68e-08;7!UBERON:0001005;3.68e-08;7!UBERON:0000305;9.74e-08;7!UBERON:0000065;4.23e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,8.46e-19,5;UBERON:0004815,9.74e-19,3;UBERON:0002031,9.74e-19,3;UBERON:0005910,1.07e-15,6;UBERON:0007196,6.59e-14,15;UBERON:0001558,6.59e-14,15;UBERON:0002185,1.90e-11,5;UBERON:0001949,1.44e-08,3;UBERON:0003126,2.92e-08,7;UBERON:0001005,2.92e-08,7;UBERON:0000305,1.02e-07,7;UBERON:0001004,1.44e-07,74;UBERON:0000065,2.00e-07,54;UBERON:0004119,6.03e-07,160;UBERON:0000925,6.03e-07,160;UBERON:0006595,6.03e-07,160;UBERON:0006554,8.26e-07,47;UBERON:0004871,8.31e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,2.09340350391728,0.655324116390517,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75826367343678,3.31326510656075,17.0086844676722,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0.188242339542605,0,0.449446968890169,1.22433556948361,0.320929027076094,1.91801137739712,0,0.199463657621632,0,0.290209238628584,0,0,0,0,0,0.605399502633369,0.736555271975129,0.316462387440884,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0.728590576585084,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35282597214308,2.45471508531751,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0.134831308160164,0.392442930250692,0,0,0,0,0,0,0,0,0,0.245976877086227,0,1.42675371031213,1.1240175325762,1.80952150340936,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.02367830757947,1.55952606966625,0.985143749731331,0.290633938513962,4.21720947081732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,4.0101294060657,2.76242966807689,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0.254876273045038,3.3243040357149,0,0,0,0,0,0,0,0,0.082509499920588,0.574265537996172,1.30012049207304,0,0,0,0,0,0,0,0,0,2.47927373041467,3.84380134730212,0.638063562472921,1.8208400553999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92444225451024,3.35151137767894,6.53345909167936,0.0941438007767792,3.44404298136984,8.42357378338128,1.33029046061003,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,1.67121139316383,0.296964680832639,1.84296421259539,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0.269605053441981,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0.278847488557207,0.153900517007594,0,0.23056390438806,0,0,1.91400695839152,0.0915975934018623,0,0,0,0,0,0,0,0,0,0.632994193584081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0.17472666824203,0,0.0967563312890851,0.219267951258557,0.246346371159628,0.0969890164884194,0,0,0.274083849293502,0,0,0.195551382734803,0.0801588202515337,0,0.39961921916426,0.288180834308212,0,0,0.14405479798815,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0,0,0.414239055347196,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88212655758537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0.214821114084977,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491545817507439,0.422624246717254,0,0,0,0,0,0.699397538597222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0.550285795565037,0.231051332300676,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0.175871244359621,0.638812138197976,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0.4582137370881,1.24082554265728,0,0,0.294450700845729,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0.535661815816973,0.705789743431384,0.160482733378337,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0.332660356546013,0.244209805832924,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,2.09340350391728,0.655324116390517,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75826367343678,3.31326510656075,17.0086844676722,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0.188242339542605,0,0.449446968890169,1.22433556948361,0.320929027076094,1.91801137739712,0,0.199463657621632,0,0.290209238628584,0,0,0,0,0,0.605399502633369,0.736555271975129,0.316462387440884,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0.728590576585084,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35282597214308,2.45471508531751,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0.134831308160164,0.392442930250692,0,0,0,0,0,0,0,0,0,0.245976877086227,0,1.42675371031213,1.1240175325762,1.80952150340936,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.02367830757947,1.55952606966625,0.985143749731331,0.290633938513962,4.21720947081732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,4.0101294060657,2.76242966807689,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0.254876273045038,3.3243040357149,0,0,0,0,0,0,0,0,0.082509499920588,0.574265537996172,1.30012049207304,0,0,0,0,0,0,0,0,0,2.47927373041467,3.84380134730212,0.638063562472921,1.8208400553999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92444225451024,3.35151137767894,6.53345909167936,0.0941438007767792,3.44404298136984,8.42357378338128,1.33029046061003,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,1.67121139316383,0.296964680832639,1.84296421259539,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0.269605053441981,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0.278847488557207,0.153900517007594,0,0.23056390438806,0,0,1.91400695839152,0.0915975934018623,0,0,0,0,0,0,0,0,0,0.632994193584081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0.17472666824203,0,0.0967563312890851,0.219267951258557,0.246346371159628,0.0969890164884194,0,0,0.274083849293502,0,0,0.195551382734803,0.0801588202515337,0,0.39961921916426,0.288180834308212,0,0,0.14405479798815,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0,0,0.414239055347196,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88212655758537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0.214821114084977,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491545817507439,0.422624246717254,0,0,0,0,0,0.699397538597222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0.550285795565037,0.231051332300676,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0.175871244359621,0.638812138197976,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0.4582137370881,1.24082554265728,0,0,0.294450700845729,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0.535661815816973,0.705789743431384,0.160482733378337,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0.332660356546013,0.244209805832924,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p@chr1:209823405..209823427,- | |||
}} | }} |
Latest revision as of 03:20, 28 July 2015
Short description: | p@chr1:209823405..209823427, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:209823405..209823427, - |
Coexpression cluster: | C571_Bronchial_Prostate_Small_Tracheal_Mallassezderived_Urothelial_Gingival |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
urothelium | 8.46e-19 | 5 |
lower respiratory tract epithelium | 9.74e-19 | 3 |
epithelium of bronchus | 9.74e-19 | 3 |
transitional epithelium | 1.07e-15 | 6 |
tracheobronchial tree | 6.59e-14 | 15 |
lower respiratory tract | 6.59e-14 | 15 |
bronchus | 1.90e-11 | 5 |
gingival epithelium | 1.44e-08 | 3 |
trachea | 2.92e-08 | 7 |
respiratory airway | 2.92e-08 | 7 |
amnion | 1.02e-07 | 7 |
respiratory system | 1.44e-07 | 74 |
respiratory tract | 2.00e-07 | 54 |
endoderm-derived structure | 6.03e-07 | 160 |
endoderm | 6.03e-07 | 160 |
presumptive endoderm | 6.03e-07 | 160 |
urinary system structure | 8.26e-07 | 47 |
somatic layer of lateral plate mesoderm | 8.31e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
central nervous system cancer | 4.57e-07 | 1 |
meningioma | 4.57e-07 | 1 |