FFCP PHASE1:Hg19::chr1:860201..860213,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr1:860201..860213,- | |||
|description=CAGE_peak_at_chr1:860201..860213,- | |||
|id=chr1:860201..860213,- | |||
|ontology_enrichment_celltype=CL:0002334!1.49e-08!12 | |||
|ontology_enrichment_celltype_v019=CL:0002334;1.31e-36;12!CL:0002580;2.05e-28;3!CL:0002579;5.67e-28;3!CL:0002581;2.50e-10;1!CL:0000306;6.24e-10;4!CL:0002222;6.24e-10;4!CL:0002224;6.24e-10;4!CL:0002620;8.31e-10;23!CL:0000057;6.71e-08;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,6.58e-37,12;CL:0002580,1.30e-28,3;CL:0002579,2.99e-28,3;CL:0000057,3.16e-18,76;CL:0002581,2.28e-10,1;CL:0002620,7.29e-10,23;CL:0000306,7.48e-10,4;CL:0002222,7.48e-10,4;CL:0002224,7.48e-10,4 | |||
|ontology_enrichment_development_v019=UBERON:0010115;2.50e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;2.83e-08;5!DOID:450;2.83e-08;5!DOID:66;2.83e-08;5!DOID:423;2.83e-08;5!DOID:0080000;2.83e-08;5!DOID:11722;2.83e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,2.36e-08,5;DOID:450,2.36e-08,5;DOID:66,2.36e-08,5;DOID:423,2.36e-08,5;DOID:0080000,2.36e-08,5;DOID:11722,2.36e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0003688!7.34e-07!6;UBERON:0002358!7.34e-07!6;UBERON:0003684!7.34e-07!6;UBERON:0001178!7.34e-07!6;UBERON:0000310!7.67e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;9.95e-25;6!UBERON:0002358;9.95e-25;6!UBERON:0003684;9.95e-25;6!UBERON:0001178;9.95e-25;6!UBERON:0004457;1.39e-16;9!UBERON:0000042;1.39e-16;9!UBERON:0000310;5.79e-15;10!UBERON:0001443;1.27e-13;11!UBERON:0002363;2.50e-10;1!UBERON:0010077;6.24e-10;4!UBERON:0005389;6.24e-10;4!UBERON:0000484;6.24e-10;4!UBERON:0000965;6.24e-10;4!UBERON:0001803;6.24e-10;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,5.76e-25,6;UBERON:0002358,5.76e-25,6;UBERON:0003684,5.76e-25,6;UBERON:0001178,5.76e-25,6;UBERON:0000310,4.84e-15,10;UBERON:0001443,1.08e-13,11;UBERON:0004457,1.31e-12,12;UBERON:0000042,1.31e-12,12;UBERON:0002363,4.33e-10,1;UBERON:0007645,4.33e-10,1;UBERON:0007647,4.33e-10,1;UBERON:0010115,4.33e-10,1;UBERON:0010077,7.48e-10,4;UBERON:0005389,7.48e-10,4;UBERON:0000484,7.48e-10,4;UBERON:0002546,7.48e-10,4;UBERON:0000965,7.48e-10,4;UBERON:0001803,7.48e-10,4;UBERON:0003073,7.48e-10,4;UBERON:0005426,7.48e-10,4 | |||
|phase1_expression=1.45342703416445,0.428201047781966,2.53717927372748,0,0.893922188854576,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,1.25381888591235,0,0.136874425072884,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,0.361439152384566,0.50133791063589,1.59331170856906,0.795285947051099,0.973269740605272,0.189069634328136,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0.163461903113459,0,1.15235184896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,1.97328599257748,0,0,2.10063767259082,0,1.8034837803194,0.558350568994769,2.36286865137773,0.487185025805993,0.252433774244115,0.184099797284599,0,1.06502877754984,0.403008392910561,0.508681776931463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0.337169380156203,0.482022059766964,0,0,0.237270619111097,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,1.44331342025273,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0.579125226670317,0.205476322550383,0,0,0,0.215627574859517,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0.356857977594324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73675465473144,4.45039722535381,2.24528075546459,1.66580894032411,3.07024349440022,1.60853921143608,1.48418066444991,0,0,0.0821271560138091,0,0.116210378459959,0,0,0,0.229628896329213,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0.183138929636687,0.247528499761764,0,0,0,0,0.308097234229289,0,0,0.107420244868274,0,0,0.0890320356467374,0,0,0,0,0.464845549297286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.565621727814851,0,2.2054613741845,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0.633322905892992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.640944426764839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0.281338832821026,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520855522170466,0.699679999969566,0,0,0.508507300585533,0.472775363535873,0,0,0,0.885741385813839,0,0,0,0,0,0.435753854075961,0.83654246567162,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370691816839509,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0,1.01098527405581,0.300646838828985,0.622129148383483,0,0,0,0,0,0,0,0,0.0870592065804026,0.52418000472609,0,0.580537987734511,0.584714536689484,0.410577285266046,0,0,0,0,0,0,0,0,0,0.39961921916426,0.144090417154106,0.229073192331831,0,0,0,0.235694034616795,0.135904206073614,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0.720599767084807,0,0,0,0,0.0984274815147488,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0.25426853765475,0,0,0,1.19730191562487,0,0.170388021785422,0.453248366080503,0.146552233678082,0,0.129282956361551,0.26446520348538,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0,0,0.248385611765534,0,0,0,0,0,0,0.579684114443301,0.298509605773748,0.233713309847224,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01024846629776,0,0,0,0,0.680117776536817,0.231522474323834,0,0.537266523244462,0,0,0,0,0.168942440653073,0.512483037175893,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,0.323474434190045,0,0,0.169732529954025,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0.397832444232549,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0,0.127762427639595,0,0,0,0,0,0.115233987555779,0.171488009437418,0.0679697329768317,0.0657727735628491,0,0,0.156986185701028,0,0.280272163313789,0,0,0,0.428859265059938,0.158013611732727,0.116241425368125,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0.198950775161368,0,0.11294608203896,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0.594092800654172,0,0.679708458751268,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0.458729283404541,0.286679166302903,0,0,0,0,0,0.462175628631418,0.432626562123789,0,0,0,0,0,0.0918948995348449,0,0.0757786982182394,0.267964130156178,0,0.103432995861895,0.213233981900981,0,0,0,0,0.25458863311266,0,0,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0.244482888365733,0,0,0.201273793591026,0 | |||
|short_description=p@chr1:860201..860213,- | |||
}} |
Latest revision as of 10:51, 28 July 2015
Short description: | p@chr1:860201..860213, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:860201..860213, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 6.58e-37 | 12 |
preadipocyte of the breast | 1.30e-28 | 3 |
omentum preadipocyte | 2.99e-28 | 3 |
fibroblast | 3.16e-18 | 76 |
perirenal preadipocyte | 2.28e-10 | 1 |
skin fibroblast | 7.29e-10 | 23 |
crystallin accumulating cell | 7.48e-10 | 4 |
vertebrate lens cell | 7.48e-10 | 4 |
lens epithelial cell | 7.48e-10 | 4 |
Ontology term | p-value | n |
---|---|---|
omentum | 5.76e-25 | 6 |
peritoneum | 5.76e-25 | 6 |
abdominal cavity | 5.76e-25 | 6 |
visceral peritoneum | 5.76e-25 | 6 |
breast | 4.84e-15 | 10 |
chest | 1.08e-13 | 11 |
cavity lining | 1.31e-12 | 12 |
serous membrane | 1.31e-12 | 12 |
dura mater | 4.33e-10 | 1 |
future meninx | 4.33e-10 | 1 |
ectomeninx | 4.33e-10 | 1 |
future dura mater | 4.33e-10 | 1 |
cuboidal epithelium | 7.48e-10 | 4 |
transparent eye structure | 7.48e-10 | 4 |
simple cuboidal epithelium | 7.48e-10 | 4 |
cranial placode | 7.48e-10 | 4 |
lens of camera-type eye | 7.48e-10 | 4 |
epithelium of lens | 7.48e-10 | 4 |
lens placode | 7.48e-10 | 4 |
lens vesicle | 7.48e-10 | 4 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.36e-08 | 5 |
myotonic disease | 2.36e-08 | 5 |
muscle tissue disease | 2.36e-08 | 5 |
myopathy | 2.36e-08 | 5 |
muscular disease | 2.36e-08 | 5 |
myotonic dystrophy | 2.36e-08 | 5 |