FFCP PHASE1:Hg19::chr1:98552570..98552605,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:98552570..98552605,+ | |||
|description=CAGE_peak_at_chr1:98552570..98552605,+ | |description=CAGE_peak_at_chr1:98552570..98552605,+ | ||
|id=chr1:98552570..98552605,+ | |id=chr1:98552570..98552605,+ | ||
|ontology_enrichment_celltype=CL:0000222!1.53e-15!119;CL:0000220!3.54e-11!246;CL:0002321!6.14e-11!248;CL:0000055!3.61e-10!180;CL:0000680!8.86e-09!57;CL:0000056!8.86e-09!57;CL:0000355!8.86e-09!57;CL:0000192!6.95e-08!42;CL:0000514!6.95e-08!42;CL:0000548!7.76e-08!679;CL:0000004!7.76e-08!679;CL:0000255!7.76e-08!679;CL:0000012!1.20e-07!682;CL:0000187!4.50e-07!54;CL:0000213!7.04e-07!57;CL:0000215!7.04e-07!57 | |ontology_enrichment_celltype=CL:0000222!1.53e-15!119;CL:0000220!3.54e-11!246;CL:0002321!6.14e-11!248;CL:0000055!3.61e-10!180;CL:0000680!8.86e-09!57;CL:0000056!8.86e-09!57;CL:0000355!8.86e-09!57;CL:0000192!6.95e-08!42;CL:0000514!6.95e-08!42;CL:0000548!7.76e-08!679;CL:0000004!7.76e-08!679;CL:0000255!7.76e-08!679;CL:0000012!1.20e-07!682;CL:0000187!4.50e-07!54;CL:0000213!7.04e-07!57;CL:0000215!7.04e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0002618;1.94e-19;3!CL:0002593;2.88e-13;2!CL:0002543;5.46e-10;6!CL:0002139;6.98e-09;24!CL:0000115;2.63e-08;36!CL:0000319;6.57e-08;1!CL:0000222;1.79e-07;1!CL:1000306;2.43e-07;4!CL:0002547;2.43e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002618,1.66e-19,3;CL:0002593,5.38e-13,2;CL:0002078,3.82e-12,45;CL:0002543,5.06e-10,6;CL:0000115,6.21e-10,36;CL:0000222,7.58e-10,121;CL:0002139,7.35e-09,24;CL:0000319,6.37e-08,1;CL:1000306,2.40e-07,4;CL:0002547,2.40e-07,4;CL:0000213,2.78e-07,58;CL:0000215,2.78e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3030;6.57e-08;1!DOID:5662;9.12e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,6.37e-08,1;DOID:5662,8.84e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0002049!8.41e-14!79;UBERON:0007798!8.41e-14!79;UBERON:0004535!1.02e-11!110;UBERON:0001009!4.29e-11!113;UBERON:0000055!1.54e-10!69;UBERON:0001981!4.51e-10!60;UBERON:0007500!4.51e-10!60;UBERON:0004537!4.51e-10!60;UBERON:0006965!4.51e-10!60;UBERON:0000490!6.77e-10!138;UBERON:0004872!1.06e-09!84;UBERON:0003914!2.05e-09!118;UBERON:0002066!3.28e-08!5;UBERON:0001637!3.60e-08!42;UBERON:0003509!3.60e-08!42;UBERON:0004572!3.60e-08!42;UBERON:0001134!8.96e-08!61;UBERON:0002036!8.96e-08!61;UBERON:0003082!8.96e-08!61;UBERON:0002385!2.52e-07!63;UBERON:0001015!2.52e-07!63;UBERON:0000383!2.52e-07!63;UBERON:0000119!3.46e-07!312;UBERON:0000483!4.44e-07!309;UBERON:0007625!4.78e-07!11 | |ontology_enrichment_uberon=UBERON:0002049!8.41e-14!79;UBERON:0007798!8.41e-14!79;UBERON:0004535!1.02e-11!110;UBERON:0001009!4.29e-11!113;UBERON:0000055!1.54e-10!69;UBERON:0001981!4.51e-10!60;UBERON:0007500!4.51e-10!60;UBERON:0004537!4.51e-10!60;UBERON:0006965!4.51e-10!60;UBERON:0000490!6.77e-10!138;UBERON:0004872!1.06e-09!84;UBERON:0003914!2.05e-09!118;UBERON:0002066!3.28e-08!5;UBERON:0001637!3.60e-08!42;UBERON:0003509!3.60e-08!42;UBERON:0004572!3.60e-08!42;UBERON:0001134!8.96e-08!61;UBERON:0002036!8.96e-08!61;UBERON:0003082!8.96e-08!61;UBERON:0002385!2.52e-07!63;UBERON:0001015!2.52e-07!63;UBERON:0000383!2.52e-07!63;UBERON:0000119!3.46e-07!312;UBERON:0000483!4.44e-07!309;UBERON:0007625!4.78e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0002456;2.88e-13;2!UBERON:0002066;6.90e-12;5!UBERON:0003513;1.88e-08;7!UBERON:0004573;3.40e-08;33!UBERON:0004571;3.40e-08;33!UBERON:0000055;1.60e-07;65!UBERON:0004797;2.43e-07;4!UBERON:0000415;2.43e-07;4!UBERON:0007240;2.43e-07;4!UBERON:0005742;2.43e-07;4!UBERON:0005734;2.43e-07;4!UBERON:0004664;2.43e-07;4!UBERON:0004663;2.43e-07;4!UBERON:0000947;2.46e-07;21!UBERON:0010191;2.46e-07;21!UBERON:0007500;4.58e-07;56!UBERON:0001981;4.58e-07;56!UBERON:0004537;4.58e-07;56!UBERON:0001638;8.29e-07;9!UBERON:0010260;8.29e-07;9!UBERON:0003920;8.29e-07;9!UBERON:0004582;8.29e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,8.22e-15,78;UBERON:0007798,8.22e-15,78;UBERON:0002456,5.38e-13,2;UBERON:0000055,7.19e-13,68;UBERON:0002066,6.30e-12,5;UBERON:0004535,3.03e-11,109;UBERON:0001009,7.39e-11,112;UBERON:0007500,8.89e-11,59;UBERON:0001981,8.89e-11,59;UBERON:0004537,8.89e-11,59;UBERON:0006965,8.89e-11,59;UBERON:0003914,2.30e-10,117;UBERON:0004872,1.65e-08,83;UBERON:0004573,1.89e-08,33;UBERON:0004571,1.89e-08,33;UBERON:0003513,2.43e-08,7;UBERON:0000947,2.19e-07,21;UBERON:0010191,2.19e-07,21;UBERON:0000415,2.40e-07,4;UBERON:0007240,2.40e-07,4;UBERON:0005742,2.40e-07,4;UBERON:0005734,2.40e-07,4;UBERON:0004664,2.40e-07,4;UBERON:0004663,2.40e-07,4;UBERON:0001638,7.89e-07,9;UBERON:0010260,7.89e-07,9;UBERON:0003920,7.89e-07,9;UBERON:0004582,7.89e-07,9 | |||
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|short_description=p@chr1:98552570..98552605,+ | |short_description=p@chr1:98552570..98552605,+ | ||
}} | }} |
Latest revision as of 11:43, 28 July 2015
Short description: | p@chr1:98552570..98552605, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:98552570..98552605, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of umbilical vein | 1.66e-19 | 3 |
smooth muscle cell of the internal thoracic artery | 5.38e-13 | 2 |
meso-epithelial cell | 3.82e-12 | 45 |
vein endothelial cell | 5.06e-10 | 6 |
endothelial cell | 6.21e-10 | 36 |
mesodermal cell | 7.58e-10 | 121 |
endothelial cell of vascular tree | 7.35e-09 | 24 |
mucus secreting cell | 6.37e-08 | 1 |
fibroblast of tunica adventitia of artery | 2.40e-07 | 4 |
fibroblast of the aortic adventitia | 2.40e-07 | 4 |
lining cell | 2.78e-07 | 58 |
barrier cell | 2.78e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
vasculature | 8.22e-15 | 78 |
vascular system | 8.22e-15 | 78 |
internal thoracic artery | 5.38e-13 | 2 |
vessel | 7.19e-13 | 68 |
umbilical vein | 6.30e-12 | 5 |
cardiovascular system | 3.03e-11 | 109 |
circulatory system | 7.39e-11 | 112 |
epithelial tube open at both ends | 8.89e-11 | 59 |
blood vessel | 8.89e-11 | 59 |
blood vasculature | 8.89e-11 | 59 |
vascular cord | 8.89e-11 | 59 |
epithelial tube | 2.30e-10 | 117 |
splanchnic layer of lateral plate mesoderm | 1.65e-08 | 83 |
systemic artery | 1.89e-08 | 33 |
systemic arterial system | 1.89e-08 | 33 |
trunk blood vessel | 2.43e-08 | 7 |
aorta | 2.19e-07 | 21 |
aortic system | 2.19e-07 | 21 |
artery wall | 2.40e-07 | 4 |
tunica adventitia of artery | 2.40e-07 | 4 |
adventitia | 2.40e-07 | 4 |
tunica adventitia of blood vessel | 2.40e-07 | 4 |
aorta tunica adventitia | 2.40e-07 | 4 |
aorta wall | 2.40e-07 | 4 |
vein | 7.89e-07 | 9 |
umbilical blood vessel | 7.89e-07 | 9 |
venous blood vessel | 7.89e-07 | 9 |
venous system | 7.89e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 6.37e-08 | 1 |
pleomorphic carcinoma | 8.84e-08 | 1 |