FFCP PHASE1:Hg19::chr2:162762129..162762142,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:162762129..162762142,+ | |||
|coexpression_cluster_id=C1498 | |||
|description=CAGE_peak_at_chr2:162762129..162762142,+ | |description=CAGE_peak_at_chr2:162762129..162762142,+ | ||
|id=chr2:162762129..162762142,+ | |id=chr2:162762129..162762142,+ | ||
|ontology_enrichment_celltype=CL:0000791!4.59e-55!18;CL:0000789!4.59e-55!18;CL:0002420!4.59e-55!18;CL:0002419!4.59e-55!18;CL:0000790!4.59e-55!18;CL:0000625!8.29e-50!11;CL:0000084!5.51e-44!25;CL:0000827!5.51e-44!25;CL:0000838!3.57e-41!52;CL:0000542!2.72e-40!53;CL:0000051!2.72e-40!53;CL:0000738!1.07e-20!140;CL:0002087!1.10e-19!119;CL:0000037!1.24e-15!172;CL:0000566!1.24e-15!172;CL:0002031!2.27e-15!124;CL:0000988!2.04e-14!182;CL:0000623!2.17e-14!3;CL:0000825!2.17e-14!3;CL:0002032!8.08e-14!165;CL:0000837!8.08e-14!165;CL:0000893!7.18e-11!2;CL:0002489!7.18e-11!2;CL:0000809!7.18e-11!2;CL:0000808!7.18e-11!2;CL:0000894!7.18e-11!2;CL:0000806!7.18e-11!2;CL:0000807!7.18e-11!2;CL:0000805!7.18e-11!2;CL:0002425!7.18e-11!2;CL:0000624!3.03e-07!6;CL:0000842!3.08e-07!3 | |ontology_enrichment_celltype=CL:0000791!4.59e-55!18;CL:0000789!4.59e-55!18;CL:0002420!4.59e-55!18;CL:0002419!4.59e-55!18;CL:0000790!4.59e-55!18;CL:0000625!8.29e-50!11;CL:0000084!5.51e-44!25;CL:0000827!5.51e-44!25;CL:0000838!3.57e-41!52;CL:0000542!2.72e-40!53;CL:0000051!2.72e-40!53;CL:0000738!1.07e-20!140;CL:0002087!1.10e-19!119;CL:0000037!1.24e-15!172;CL:0000566!1.24e-15!172;CL:0002031!2.27e-15!124;CL:0000988!2.04e-14!182;CL:0000623!2.17e-14!3;CL:0000825!2.17e-14!3;CL:0002032!8.08e-14!165;CL:0000837!8.08e-14!165;CL:0000893!7.18e-11!2;CL:0002489!7.18e-11!2;CL:0000809!7.18e-11!2;CL:0000808!7.18e-11!2;CL:0000894!7.18e-11!2;CL:0000806!7.18e-11!2;CL:0000807!7.18e-11!2;CL:0000805!7.18e-11!2;CL:0002425!7.18e-11!2;CL:0000624!3.03e-07!6;CL:0000842!3.08e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000791;5.72e-58;18!CL:0000789;5.72e-58;18!CL:0002419;5.72e-58;18!CL:0000625;1.80e-53;11!CL:0000084;1.16e-41;25!CL:0000895;2.66e-18;1!CL:0002127;5.72e-18;1!CL:0000911;5.72e-18;1!CL:0000814;5.72e-18;1!CL:0000542;1.39e-13;53!CL:0000771;9.46e-10;2!CL:0000898;5.80e-07;3!CL:0000623;7.49e-07;3!CL:0000226;9.64e-07;3!CL:0000842;9.64e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,6.40e-58,18;CL:0000789,6.40e-58,18;CL:0002420,6.40e-58,18;CL:0002419,6.40e-58,18;CL:0000790,6.40e-58,18;CL:0000625,2.16e-53,11;CL:0000084,1.25e-41,25;CL:0000827,1.25e-41,25;CL:0000893,1.84e-34,2;CL:0002489,1.84e-34,2;CL:0000809,1.84e-34,2;CL:0000808,1.84e-34,2;CL:0000894,1.84e-34,2;CL:0000806,1.84e-34,2;CL:0000807,1.84e-34,2;CL:0000805,1.84e-34,2;CL:0002425,1.84e-34,2;CL:0000838,4.36e-25,52;CL:0000542,1.33e-24,53;CL:0000051,1.33e-24,53;CL:0000810,2.66e-18,1;CL:0000895,2.66e-18,1;CL:0002436,2.66e-18,1;CL:0002427,2.66e-18,1;CL:0002428,2.66e-18,1;CL:0002429,2.66e-18,1;CL:0002433,2.66e-18,1;CL:0002431,2.66e-18,1;CL:0002432,2.66e-18,1;CL:0002127,5.26e-18,1;CL:0000914,5.26e-18,1;CL:0000911,5.26e-18,1;CL:0000814,5.26e-18,1;CL:0002042,5.26e-18,1;CL:0002039,5.26e-18,1;CL:0002040,5.26e-18,1;CL:0002041,5.26e-18,1;CL:0000738,8.94e-14,136;CL:0002087,1.82e-13,115;CL:0000037,5.38e-11,168;CL:0002031,2.11e-10,120;CL:0000988,2.16e-10,177;CL:0000771,9.46e-10,2;CL:0002032,1.93e-09,161;CL:0000837,1.93e-09,161;CL:0000898,5.80e-07,3;CL:0000623,6.88e-07,3;CL:0000825,6.88e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;5.72e-58;18!CL:0002425;2.01e-34;2!CL:0002427;2.66e-18;1!CL:0000051;1.39e-13;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!4.63e-11!4;UBERON:0005058!4.63e-11!4;UBERON:0009113!4.63e-11!4;UBERON:0003295!4.63e-11!4;UBERON:0005562!4.63e-11!4;UBERON:0004177!1.03e-10!7;UBERON:0000178!1.73e-10!15;UBERON:0000179!1.73e-10!15;UBERON:0000463!1.73e-10!15;UBERON:0003351!1.64e-07!6 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,8.74e-18,4;UBERON:0005058,8.74e-18,4;UBERON:0009113,8.74e-18,4;UBERON:0003295,8.74e-18,4;UBERON:0005562,8.74e-18,4;UBERON:0003351,3.44e-12,6;UBERON:0004177,1.39e-10,7;UBERON:0005057,1.39e-10,7;UBERON:0000974,1.13e-07,10;UBERON:0003408,1.13e-07,10;UBERON:0001042,1.13e-07,10;UBERON:0009145,1.13e-07,10;UBERON:0006562,4.71e-07,11;UBERON:0009722,4.71e-07,11;UBERON:0007690,4.71e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0,0.0787107813136792,0.393364276848904,0,0,0,0,0,0.542270404062111,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339928028092699,6.89796888483458,1.71813722741315,0,1.27426165729639,1.30216690771284,0.950452044448374,2.25862678616659,2.04778577847069,1.24930726552346,0.710331756132051,0.821127996921047,5.44338206706778,0.534880391567015,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35378802386407,2.36436912242313,0.431255149719035,0.256686072559497,0.254094624222463,0,0,0,0,0,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24060815673732,0,0.853820462427555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0.822724546172388,0,0.540031437238115,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329607748453519,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344429959321631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0.375935671919414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0,0.0787107813136792,0.393364276848904,0,0,0,0,0,0.542270404062111,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339928028092699,6.89796888483458,1.71813722741315,0,1.27426165729639,1.30216690771284,0.950452044448374,2.25862678616659,2.04778577847069,1.24930726552346,0.710331756132051,0.821127996921047,5.44338206706778,0.534880391567015,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35378802386407,2.36436912242313,0.431255149719035,0.256686072559497,0.254094624222463,0,0,0,0,0,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24060815673732,0,0.853820462427555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0.822724546172388,0,0.540031437238115,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329607748453519,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344429959321631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0.375935671919414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr2:162762129..162762142,+ | |short_description=p@chr2:162762129..162762142,+ | ||
}} | }} |
Latest revision as of 01:56, 29 July 2015
Short description: | p@chr2:162762129..162762142, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:162762129..162762142, + |
Coexpression cluster: | C1498_CD4_CD8_Natural_NK_Eosinophils_Peripheral_Basophils |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 8.74e-18 | 4 |
hemolymphoid system gland | 8.74e-18 | 4 |
thymic region | 8.74e-18 | 4 |
pharyngeal gland | 8.74e-18 | 4 |
thymus primordium | 8.74e-18 | 4 |
pharyngeal epithelium | 3.44e-12 | 6 |
hemopoietic organ | 1.39e-10 | 7 |
immune organ | 1.39e-10 | 7 |
neck | 1.13e-07 | 10 |
gland of gut | 1.13e-07 | 10 |
chordate pharynx | 1.13e-07 | 10 |
pharyngeal region of foregut | 1.13e-07 | 10 |
pharynx | 4.71e-07 | 11 |
entire pharyngeal arch endoderm | 4.71e-07 | 11 |
early pharyngeal endoderm | 4.71e-07 | 11 |