FFCP PHASE1:Hg19::chr2:216236997..216237046,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:216236997..216237046,+ | |||
|coexpression_cluster_id=C79 | |||
|description=CAGE_peak_at_chr2:216236997..216237046,+ | |description=CAGE_peak_at_chr2:216236997..216237046,+ | ||
|id=chr2:216236997..216237046,+ | |id=chr2:216236997..216237046,+ | ||
|ontology_enrichment_celltype=CL:0000055!3.61e-23!180;CL:0000057!2.98e-16!75;CL:0002371!1.96e-15!591;CL:0000680!4.63e-15!57;CL:0000056!4.63e-15!57;CL:0000355!4.63e-15!57;CL:0000187!1.18e-13!54;CL:0000144!1.32e-13!625;CL:0000183!2.40e-13!59;CL:0000048!1.07e-11!430;CL:0000393!1.60e-11!60;CL:0000211!1.60e-11!60;CL:0000723!3.71e-11!436;CL:0000034!1.12e-10!444;CL:0000548!2.12e-10!679;CL:0000004!2.12e-10!679;CL:0000255!2.12e-10!679;CL:0000012!5.29e-10!682;CL:0002620!1.00e-09!23;CL:0000192!1.21e-08!42;CL:0000514!1.21e-08!42;CL:0000222!3.48e-08!119;CL:0000359!5.38e-07!32;CL:0002334!1.00e-06!12 | |ontology_enrichment_celltype=CL:0000055!3.61e-23!180;CL:0000057!2.98e-16!75;CL:0002371!1.96e-15!591;CL:0000680!4.63e-15!57;CL:0000056!4.63e-15!57;CL:0000355!4.63e-15!57;CL:0000187!1.18e-13!54;CL:0000144!1.32e-13!625;CL:0000183!2.40e-13!59;CL:0000048!1.07e-11!430;CL:0000393!1.60e-11!60;CL:0000211!1.60e-11!60;CL:0000723!3.71e-11!436;CL:0000034!1.12e-10!444;CL:0000548!2.12e-10!679;CL:0000004!2.12e-10!679;CL:0000255!2.12e-10!679;CL:0000012!5.29e-10!682;CL:0002620!1.00e-09!23;CL:0000192!1.21e-08!42;CL:0000514!1.21e-08!42;CL:0000222!3.48e-08!119;CL:0000359!5.38e-07!32;CL:0002334!1.00e-06!12 | ||
|ontology_enrichment_celltype_v019=CL:0000134;1.68e-13;55!CL:0000723;5.06e-13;61!CL:0000349;3.20e-11;19!CL:0002334;1.12e-10;12!CL:0000048;1.61e-10;58!CL:0000034;2.46e-10;69!CL:0002570;7.27e-10;8!CL:0002569;1.59e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.58e-15,76;CL:0000048,4.14e-15,427;CL:0000723,1.85e-14,433;CL:0000034,1.26e-13,441;CL:0000349,5.49e-11,19;CL:0002334,8.73e-11,12;CL:0000680,1.08e-10,58;CL:0000056,1.08e-10,58;CL:0000355,1.08e-10,58;CL:0002570,6.61e-10,8;CL:0000187,1.08e-09,55;CL:0002320,3.08e-09,361;CL:0000393,4.88e-08,61;CL:0000211,4.88e-08,61;CL:0000134,9.97e-08,354;CL:0002569,3.10e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!2.72e-07!14 | |ontology_enrichment_disease=DOID:2394!2.72e-07!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.24e-17!83;UBERON:0002329!1.24e-17!83;UBERON:0003077!1.24e-17!83;UBERON:0003059!1.24e-17!83;UBERON:0007282!1.24e-17!83;UBERON:0009618!1.24e-17!83;UBERON:0007285!1.24e-17!83;UBERON:0004290!1.05e-16!70;UBERON:0000486!1.03e-15!82;UBERON:0001134!8.51e-14!61;UBERON:0002036!8.51e-14!61;UBERON:0003082!8.51e-14!61;UBERON:0002385!1.86e-13!63;UBERON:0001015!1.86e-13!63;UBERON:0000383!1.86e-13!63;UBERON:0005256!2.00e-12!143;UBERON:0000490!1.61e-10!138;UBERON:0004872!3.54e-10!84;UBERON:0001637!1.72e-09!42;UBERON:0003509!1.72e-09!42;UBERON:0004572!1.72e-09!42;UBERON:0002049!1.23e-08!79;UBERON:0007798!1.23e-08!79;UBERON:0002100!1.66e-08!216;UBERON:0004535!3.33e-08!110;UBERON:0004923!3.70e-08!57;UBERON:0001009!7.22e-08!113;UBERON:0000478!1.22e-07!24;UBERON:0002199!1.46e-07!45;UBERON:0002416!1.46e-07!45;UBERON:0005631!3.51e-07!14;UBERON:0000158!3.51e-07!14;UBERON:0004573!5.96e-07!33;UBERON:0004571!5.96e-07!33;UBERON:0000947!6.32e-07!21;UBERON:0010191!6.32e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;5.14e-09;9!UBERON:0000042;5.14e-09;9!UBERON:0003104;9.81e-09;7!UBERON:0009142;9.81e-09;7!UBERON:0003688;4.17e-08;6!UBERON:0002358;4.17e-08;6!UBERON:0003684;4.17e-08;6!UBERON:0001178;4.17e-08;6!UBERON:0000478;4.52e-08;24!UBERON:0003422;1.59e-07;6!UBERON:0002384;5.14e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,3.42e-11,73;UBERON:0002329,9.35e-11,71;UBERON:0003059,9.35e-11,71;UBERON:0007282,9.35e-11,71;UBERON:0004290,9.35e-11,71;UBERON:0009618,9.35e-11,71;UBERON:0003077,1.77e-10,72;UBERON:0007285,1.77e-10,72;UBERON:0002384,7.37e-10,371;UBERON:0000486,1.53e-09,83;UBERON:0001134,1.72e-09,62;UBERON:0002036,1.72e-09,62;UBERON:0003082,1.72e-09,62;UBERON:0000926,1.97e-09,315;UBERON:0004120,1.97e-09,315;UBERON:0006603,1.97e-09,315;UBERON:0007503,5.44e-09,78;UBERON:0002385,5.94e-09,64;UBERON:0001015,5.94e-09,64;UBERON:0000383,5.94e-09,64;UBERON:0003688,6.49e-08,6;UBERON:0002358,6.49e-08,6;UBERON:0003684,6.49e-08,6;UBERON:0001178,6.49e-08,6;UBERON:0000478,6.70e-08,24;UBERON:0003422,3.10e-07,6;UBERON:0004872,3.82e-07,83;UBERON:0004923,4.15e-07,66;UBERON:0003104,6.74e-07,160;UBERON:0009142,6.74e-07,160 | |||
|phase1_expression=2.18014055124668,3.8538094300377,1.12763523276777,6.00439790118782,1.34088328328186,0,7.59899634504932,0.631719873426831,0,0.491467873003018,0,0.436882744260345,2.63766978228454,1.73272894144065,1.65698687863958,2.01697543935533,1.80808358407193,2.19093027116212,0.975865597581014,0.246242116153576,0,0,0,0,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,4.02420515822182,3.19656404608826,1.80719576192283,0.50133791063589,1.73815822752988,0,28.7114573478555,0.283604451492204,0.665188192387692,0.87834785693126,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0.347140501607594,1.13061588384802,1.67799774483962,2.20094433552054,0.417989933073621,0.258416759169329,0.35576626268671,0,0,0,0.24406205754817,0,1.62028389576352,0.0892997282840798,0,0,0,0,0,0,0,0,4.47274756525787,1.77282716330412,8.20936921041957,6.02356903572509,1.77334191099179,0,3.20246987189115,7.64669400093196,0,1.34710672069688,1.14423332179421,0.908144565869588,4.03323147135999,0,2.80944069147288,0.570471821544449,4.93180645820944,0.469737994575059,0.485618833104395,0.702254033511242,0.204154171254893,1.22834317311768,0.103325781175765,0,1.7308685049499,0,0,1.17835279767846,0.500474079487857,0,0,2.75839016219118,0.751190294532984,2.26864366320042,3.04962380671065,1.2813443329114,2.7551147150743,5.40163972951924,0.206105058476878,4.12224864073007,0.18611685633159,1.85653965465393,0.68205903612839,4.03894038790583,0.828449087780694,1.45481451136931,2.84007674013291,0.503760491138201,0.169560592310488,0.193260853163297,0.545492241181669,0,0,0,0.580969714347592,0.310983165046111,0,0.36497735907583,0,4.5026865673502,1.38134921352481,3.25057549622385,3.60939740834793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0.686271241194102,0.439001141634502,0,0,0,0,0,1.44331342025273,0,1.17408694235822,0.144366447761074,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0.503946384596579,0,1.97028749946266,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.51336800074665,2.06834745212444,3.57656445851882,9.298330278116,0,1.04007436911366,1.54324424557285,1.41849132023278,0.532844358032199,0.285955987316295,1.08524321078289,3.29296134712308,1.30294473717494,0.355391948742546,2.37585561880029,0.602878754119172,0,0.199945982364114,0,0,0,1.4377491329495,2.29723871668228,0,1.59259437334337,3.28762116080613,0.716243852959582,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0.981531933753119,4.50153468953709,2.44138521329762,6.23912584592421,7.13715955188647,3.46945313074656,2.22568688486155,0.601892199455438,2.27407504055985,0,0.664225598535437,1.10621501125022,0.868836144680828,0,1.02943027143257,0,0,0,0.303127571446259,3.32870879020994,3.32629322662648,3.47350930946288,13.9650395692137,7.01650236082684,2.69092213436972,3.07024349440022,4.98647155545183,0,2.92998418225046,3.55123450626254,1.64254312027618,0,2.09178681227927,0.120859449591622,3.20810352485256,0,0.114814448164607,1.0925470080403,1.70461739447251,0,0.231046011313244,0,1.46139224653261,0.211103257785751,0,0.170093705276516,0,0,0.541892875087706,0,0,0,0.223874754722178,0,0,0.256450125116389,0,0,0.206082023295445,0.0915694648183434,0,0,0,1.6068392984416,0.96670718292122,1.54048617114644,2.91656981979646,1.24052915236078,2.47066563197029,2.75531718437034,2.38634556765083,1.33548053470106,0.826424576804891,0.768760269460425,1.14851441245126,0.30347334256665,1.39453664789186,5.98143458978216,0,0.308033580176089,0,1.73986598415015,0.37064843820784,0.286249773483982,0.372158369359667,2.84741482246853,1.71567174531442,0,1.28381696410176,0.318203247925937,0,1.07923474549989,0.823611089208164,0.471249609382746,0.404364963146632,0,0,0,0.487426979262569,1.05650146756755,0.9554993798559,1.1312434556297,1.13008116620243,0,1.99031692572366,0.438450885253763,1.15755106853338,1.31178950409327,1.21746226177622,0.92947049429925,0.563391205064483,0.860468113224309,2.06322986127554,0,0.354761064070598,2.9555068941673,3.62224382255892,0,0.349934720244983,0,0,0,0.188287601553558,0,0,0,0.459446800413919,0,0,0,0.238231775457789,0,0,0,0,0.106824071127473,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.29740072527842,0.890894042497916,0.921482106297696,0,0,6.12197877625982,0,0,0.597743964753209,0,0,0,0,9.33118762985422,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0.291604613383254,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0.797594390929008,0.23056390438806,0,0,21.0540765423067,1.74035427463538,43.1758168575094,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0.995261931078505,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0.394584402849391,1.20990716048664,0,0.063186579628488,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0.451961481561065,0.274083849293502,0,0,0,0.0801588202515337,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,1.28929632425987,0,0,0,0,0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| |phase1_expression=2.18014055124668,3.8538094300377,1.12763523276777,6.00439790118782,1.34088328328186,0,7.59899634504932,0.631719873426831,0,0.491467873003018,0,0.436882744260345,2.63766978228454,1.73272894144065,1.65698687863958,2.01697543935533,1.80808358407193,2.19093027116212,0.975865597581014,0.246242116153576,0,0,0,0,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,4.02420515822182,3.19656404608826,1.80719576192283,0.50133791063589,1.73815822752988,0,28.7114573478555,0.283604451492204,0.665188192387692,0.87834785693126,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0.347140501607594,1.13061588384802,1.67799774483962,2.20094433552054,0.417989933073621,0.258416759169329,0.35576626268671,0,0,0,0.24406205754817,0,1.62028389576352,0.0892997282840798,0,0,0,0,0,0,0,0,4.47274756525787,1.77282716330412,8.20936921041957,6.02356903572509,1.77334191099179,0,3.20246987189115,7.64669400093196,0,1.34710672069688,1.14423332179421,0.908144565869588,4.03323147135999,0,2.80944069147288,0.570471821544449,4.93180645820944,0.469737994575059,0.485618833104395,0.702254033511242,0.204154171254893,1.22834317311768,0.103325781175765,0,1.7308685049499,0,0,1.17835279767846,0.500474079487857,0,0,2.75839016219118,0.751190294532984,2.26864366320042,3.04962380671065,1.2813443329114,2.7551147150743,5.40163972951924,0.206105058476878,4.12224864073007,0.18611685633159,1.85653965465393,0.68205903612839,4.03894038790583,0.828449087780694,1.45481451136931,2.84007674013291,0.503760491138201,0.169560592310488,0.193260853163297,0.545492241181669,0,0,0,0.580969714347592,0.310983165046111,0,0.36497735907583,0,4.5026865673502,1.38134921352481,3.25057549622385,3.60939740834793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0.686271241194102,0.439001141634502,0,0,0,0,0,1.44331342025273,0,1.17408694235822,0.144366447761074,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0.503946384596579,0,1.97028749946266,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.51336800074665,2.06834745212444,3.57656445851882,9.298330278116,0,1.04007436911366,1.54324424557285,1.41849132023278,0.532844358032199,0.285955987316295,1.08524321078289,3.29296134712308,1.30294473717494,0.355391948742546,2.37585561880029,0.602878754119172,0,0.199945982364114,0,0,0,1.4377491329495,2.29723871668228,0,1.59259437334337,3.28762116080613,0.716243852959582,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0.981531933753119,4.50153468953709,2.44138521329762,6.23912584592421,7.13715955188647,3.46945313074656,2.22568688486155,0.601892199455438,2.27407504055985,0,0.664225598535437,1.10621501125022,0.868836144680828,0,1.02943027143257,0,0,0,0.303127571446259,3.32870879020994,3.32629322662648,3.47350930946288,13.9650395692137,7.01650236082684,2.69092213436972,3.07024349440022,4.98647155545183,0,2.92998418225046,3.55123450626254,1.64254312027618,0,2.09178681227927,0.120859449591622,3.20810352485256,0,0.114814448164607,1.0925470080403,1.70461739447251,0,0.231046011313244,0,1.46139224653261,0.211103257785751,0,0.170093705276516,0,0,0.541892875087706,0,0,0,0.223874754722178,0,0,0.256450125116389,0,0,0.206082023295445,0.0915694648183434,0,0,0,1.6068392984416,0.96670718292122,1.54048617114644,2.91656981979646,1.24052915236078,2.47066563197029,2.75531718437034,2.38634556765083,1.33548053470106,0.826424576804891,0.768760269460425,1.14851441245126,0.30347334256665,1.39453664789186,5.98143458978216,0,0.308033580176089,0,1.73986598415015,0.37064843820784,0.286249773483982,0.372158369359667,2.84741482246853,1.71567174531442,0,1.28381696410176,0.318203247925937,0,1.07923474549989,0.823611089208164,0.471249609382746,0.404364963146632,0,0,0,0.487426979262569,1.05650146756755,0.9554993798559,1.1312434556297,1.13008116620243,0,1.99031692572366,0.438450885253763,1.15755106853338,1.31178950409327,1.21746226177622,0.92947049429925,0.563391205064483,0.860468113224309,2.06322986127554,0,0.354761064070598,2.9555068941673,3.62224382255892,0,0.349934720244983,0,0,0,0.188287601553558,0,0,0,0.459446800413919,0,0,0,0.238231775457789,0,0,0,0,0.106824071127473,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.29740072527842,0.890894042497916,0.921482106297696,0,0,6.12197877625982,0,0,0.597743964753209,0,0,0,0,9.33118762985422,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0.291604613383254,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0.797594390929008,0.23056390438806,0,0,21.0540765423067,1.74035427463538,43.1758168575094,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0.995261931078505,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0.394584402849391,1.20990716048664,0,0.063186579628488,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0.451961481561065,0.274083849293502,0,0,0,0.0801588202515337,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,1.28929632425987,0,0,0,0,0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| ||
|short_description=p@chr2:216236997..216237046,+ | |short_description=p@chr2:216236997..216237046,+ | ||
}} | }} |
Latest revision as of 06:01, 29 July 2015
Short description: | p@chr2:216236997..216237046, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:216236997..216237046, + |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.58e-15 | 76 |
multi fate stem cell | 4.14e-15 | 427 |
somatic stem cell | 1.85e-14 | 433 |
stem cell | 1.26e-13 | 441 |
extraembryonic cell | 5.49e-11 | 19 |
preadipocyte | 8.73e-11 | 12 |
muscle precursor cell | 1.08e-10 | 58 |
myoblast | 1.08e-10 | 58 |
multi-potent skeletal muscle stem cell | 1.08e-10 | 58 |
mesenchymal stem cell of adipose | 6.61e-10 | 8 |
muscle cell | 1.08e-09 | 55 |
connective tissue cell | 3.08e-09 | 361 |
electrically responsive cell | 4.88e-08 | 61 |
electrically active cell | 4.88e-08 | 61 |
mesenchymal cell | 9.97e-08 | 354 |
mesenchymal stem cell of umbilical cord | 3.10e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 3.42e-11 | 73 |
somite | 9.35e-11 | 71 |
presomitic mesoderm | 9.35e-11 | 71 |
presumptive segmental plate | 9.35e-11 | 71 |
dermomyotome | 9.35e-11 | 71 |
trunk paraxial mesoderm | 9.35e-11 | 71 |
paraxial mesoderm | 1.77e-10 | 72 |
presumptive paraxial mesoderm | 1.77e-10 | 72 |
connective tissue | 7.37e-10 | 371 |
multilaminar epithelium | 1.53e-09 | 83 |
skeletal muscle tissue | 1.72e-09 | 62 |
striated muscle tissue | 1.72e-09 | 62 |
myotome | 1.72e-09 | 62 |
mesoderm | 1.97e-09 | 315 |
mesoderm-derived structure | 1.97e-09 | 315 |
presumptive mesoderm | 1.97e-09 | 315 |
epithelial vesicle | 5.44e-09 | 78 |
muscle tissue | 5.94e-09 | 64 |
musculature | 5.94e-09 | 64 |
musculature of body | 5.94e-09 | 64 |
omentum | 6.49e-08 | 6 |
peritoneum | 6.49e-08 | 6 |
abdominal cavity | 6.49e-08 | 6 |
visceral peritoneum | 6.49e-08 | 6 |
extraembryonic structure | 6.70e-08 | 24 |
mesenchyme of umbilical cord | 3.10e-07 | 6 |
splanchnic layer of lateral plate mesoderm | 3.82e-07 | 83 |
organ component layer | 4.15e-07 | 66 |
mesenchyme | 6.74e-07 | 160 |
entire embryonic mesenchyme | 6.74e-07 | 160 |