FFCP PHASE1:Hg19::chr2:237682972..237682977,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:237682972..237682977,+ | |||
|coexpression_cluster_id=C323 | |||
|description=CAGE_peak_at_chr2:237682972..237682977,+ | |description=CAGE_peak_at_chr2:237682972..237682977,+ | ||
|id=chr2:237682972..237682977,+ | |id=chr2:237682972..237682977,+ | ||
|ontology_enrichment_celltype=CL:0000349!6.94e-44!3;CL:0002577!6.94e-44!3;CL:0002536!2.56e-29!2;CL:0002541!6.50e-20!3;CL:0000946!2.75e-15!1;CL:0000786!2.75e-15!1;CL:0000980!2.75e-15!1;CL:0002537!2.12e-12!5;CL:0000785!2.67e-08!2;CL:0000955!2.67e-08!2;CL:0000818!2.67e-08!2;CL:0000954!2.67e-08!2;CL:0000816!2.67e-08!2 | |ontology_enrichment_celltype=CL:0000349!6.94e-44!3;CL:0002577!6.94e-44!3;CL:0002536!2.56e-29!2;CL:0002541!6.50e-20!3;CL:0000946!2.75e-15!1;CL:0000786!2.75e-15!1;CL:0000980!2.75e-15!1;CL:0002537!2.12e-12!5;CL:0000785!2.67e-08!2;CL:0000955!2.67e-08!2;CL:0000818!2.67e-08!2;CL:0000954!2.67e-08!2;CL:0000816!2.67e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0000349;2.93e-73;19!CL:0002577;1.10e-66;3!CL:0002536;1.91e-44;2!CL:0002537;1.69e-18;5!CL:0002541;1.26e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,3.07e-73,19;CL:0002577,9.82e-67,3;CL:0002536,2.98e-44,2;CL:0002537,1.77e-18,5;CL:0002541,1.12e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!5.97e-100!14;UBERON:0000158!5.97e-100!14;UBERON:0003124!1.27e-72!7;UBERON:0000478!4.99e-58!24;UBERON:0001987!3.36e-57!4;UBERON:0004340!3.36e-57!4;UBERON:0000305!9.69e-33!7;UBERON:0004871!1.05e-28!8;UBERON:0004923!5.91e-24!57;UBERON:0000476!6.50e-20!3;UBERON:0000920!6.50e-20!3;UBERON:0000995!3.27e-11!21;UBERON:0005795!1.03e-10!22;UBERON:0003975!1.03e-10!22;UBERON:0004175!1.85e-09!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;4.90e-58;24!UBERON:0005631;1.73e-54;10!UBERON:0000158;1.73e-54;10!UBERON:0001987;2.87e-50;4!UBERON:0000305;4.42e-50;7!UBERON:0003124;1.26e-08;3!UBERON:0000920;1.26e-08;3!UBERON:0004923;3.86e-08;55!UBERON:0000077;4.59e-08;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.63e-99,14;UBERON:0000158,2.63e-99,14;UBERON:0000478,5.09e-58,24;UBERON:0003124,1.02e-50,7;UBERON:0001987,2.64e-50,4;UBERON:0004340,2.64e-50,4;UBERON:0000305,6.07e-50,7;UBERON:0004871,8.65e-44,8;UBERON:0004923,4.09e-21,66;UBERON:0000995,3.35e-10,21;UBERON:0005795,9.12e-10,22;UBERON:0003975,9.12e-10,22;UBERON:0000920,1.12e-08,3;UBERON:0004175,1.14e-08,25;UBERON:0000077,1.49e-07,29 | |||
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|short_description=p@chr2:237682972..237682977,+ | |short_description=p@chr2:237682972..237682977,+ | ||
}} | }} |
Latest revision as of 08:08, 29 July 2015
Short description: | p@chr2:237682972..237682977, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:237682972..237682977, + |
Coexpression cluster: | C323_Placental_Amniotic_neuroblastoma_amniotic_chorionic_hairy_locus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 3.07e-73 | 19 |
placental epithelial cell | 9.82e-67 | 3 |
amniotic epithelial cell | 2.98e-44 | 2 |
amnion mesenchymal stem cell | 1.77e-18 | 5 |
chorionic membrane mesenchymal stem cell | 1.12e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.63e-99 | 14 |
membranous layer | 2.63e-99 | 14 |
extraembryonic structure | 5.09e-58 | 24 |
chorion | 1.02e-50 | 7 |
placenta | 2.64e-50 | 4 |
allantois | 2.64e-50 | 4 |
amnion | 6.07e-50 | 7 |
somatic layer of lateral plate mesoderm | 8.65e-44 | 8 |
organ component layer | 4.09e-21 | 66 |
uterus | 3.35e-10 | 21 |
embryonic uterus | 9.12e-10 | 22 |
internal female genitalia | 9.12e-10 | 22 |
egg chorion | 1.12e-08 | 3 |
internal genitalia | 1.14e-08 | 25 |
mixed endoderm/mesoderm-derived structure | 1.49e-07 | 29 |