FFCP PHASE1:Hg19::chr2:237682990..237683009,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:237682990..237683009,+ | |||
|coexpression_cluster_id=C323 | |coexpression_cluster_id=C323 | ||
|description=CAGE_peak_at_chr2:237682990..237683009,+ | |description=CAGE_peak_at_chr2:237682990..237683009,+ | ||
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|ontology_enrichment_celltype=CL:0000349!2.89e-23!3;CL:0002577!2.89e-23!3;CL:0002541!1.36e-22!3;CL:0002536!4.79e-16!2;CL:0002537!8.25e-14!5 | |ontology_enrichment_celltype=CL:0000349!2.89e-23!3;CL:0002577!2.89e-23!3;CL:0002541!1.36e-22!3;CL:0002536!4.79e-16!2;CL:0002537!8.25e-14!5 | ||
|ontology_enrichment_celltype_v019=CL:0000349;8.88e-89;19!CL:0002577;6.94e-44;3!CL:0002541;1.78e-42;3!CL:0002536;1.00e-29;2!CL:0002537;6.05e-26;5 | |ontology_enrichment_celltype_v019=CL:0000349;8.88e-89;19!CL:0002577;6.94e-44;3!CL:0002541;1.78e-42;3!CL:0002536;1.00e-29;2!CL:0002537;6.05e-26;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0000349,8.17e-89,19;CL:0002577,6.94e-44,3;CL:0002541,1.43e-42,3;CL:0002536,9.31e-30,2;CL:0002537,6.59e-26,5 | |||
|ontology_enrichment_development_v019=UBERON:0000358;2.38e-15;1 | |ontology_enrichment_development_v019=UBERON:0000358;2.38e-15;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!2.11e-73!14;UBERON:0000158!2.11e-73!14;UBERON:0003124!1.15e-50!7;UBERON:0000478!2.68e-49!24;UBERON:0001987!7.25e-30!4;UBERON:0004340!7.25e-30!4;UBERON:0000305!2.61e-26!7;UBERON:0004871!5.20e-23!8;UBERON:0000476!1.36e-22!3;UBERON:0000920!1.36e-22!3;UBERON:0004923!2.73e-19!57;UBERON:0001896!4.39e-10!3;UBERON:0005290!4.39e-10!3;UBERON:0010096!4.39e-10!3;UBERON:0007190!3.79e-08!1 | |ontology_enrichment_uberon=UBERON:0005631!2.11e-73!14;UBERON:0000158!2.11e-73!14;UBERON:0003124!1.15e-50!7;UBERON:0000478!2.68e-49!24;UBERON:0001987!7.25e-30!4;UBERON:0004340!7.25e-30!4;UBERON:0000305!2.61e-26!7;UBERON:0004871!5.20e-23!8;UBERON:0000476!1.36e-22!3;UBERON:0000920!1.36e-22!3;UBERON:0004923!2.73e-19!57;UBERON:0001896!4.39e-10!3;UBERON:0005290!4.39e-10!3;UBERON:0010096!4.39e-10!3;UBERON:0007190!3.79e-08!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;4.82e-89;10!UBERON:0000158;4.82e-89;10!UBERON:0000478;2.15e-83;24!UBERON:0000305;1.70e-50;7!UBERON:0003124;1.78e-42;3!UBERON:0000920;1.78e-42;3!UBERON:0001987;4.01e-33;4!UBERON:0004923;1.96e-09;55 | |ontology_enrichment_uberon_v019=UBERON:0005631;4.82e-89;10!UBERON:0000158;4.82e-89;10!UBERON:0000478;2.15e-83;24!UBERON:0000305;1.70e-50;7!UBERON:0003124;1.78e-42;3!UBERON:0000920;1.78e-42;3!UBERON:0001987;4.01e-33;4!UBERON:0004923;1.96e-09;55 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,8.75e-121,14;UBERON:0000158,8.75e-121,14;UBERON:0000478,2.00e-83,24;UBERON:0003124,1.44e-72,7;UBERON:0000305,1.79e-50,7;UBERON:0004871,3.37e-44,8;UBERON:0000920,1.43e-42,3;UBERON:0001987,4.01e-33,4;UBERON:0004340,4.01e-33,4;UBERON:0004923,6.36e-25,66;UBERON:0000995,8.60e-07,21 | |||
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|short_description=p@chr2:237682990..237683009,+ | |short_description=p@chr2:237682990..237683009,+ | ||
}} | }} |
Latest revision as of 08:08, 29 July 2015
Short description: | p@chr2:237682990..237683009, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:237682990..237683009, + |
Coexpression cluster: | C323_Placental_Amniotic_neuroblastoma_amniotic_chorionic_hairy_locus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 8.17e-89 | 19 |
placental epithelial cell | 6.94e-44 | 3 |
chorionic membrane mesenchymal stem cell | 1.43e-42 | 3 |
amniotic epithelial cell | 9.31e-30 | 2 |
amnion mesenchymal stem cell | 6.59e-26 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 8.75e-121 | 14 |
membranous layer | 8.75e-121 | 14 |
extraembryonic structure | 2.00e-83 | 24 |
chorion | 1.44e-72 | 7 |
amnion | 1.79e-50 | 7 |
somatic layer of lateral plate mesoderm | 3.37e-44 | 8 |
egg chorion | 1.43e-42 | 3 |
placenta | 4.01e-33 | 4 |
allantois | 4.01e-33 | 4 |
organ component layer | 6.36e-25 | 66 |
uterus | 8.60e-07 | 21 |