FFCP PHASE1:Hg19::chr3:19993210..19993215,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:19993210..19993215,+ to FFCP PHASE1:Hg19::chr3:19993210..19993215,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:19993210..19993215,+ | |||
|coexpression_cluster_id=C3406 | |||
|description=CAGE_peak_at_chr3:19993210..19993215,+ | |||
|id=chr3:19993210..19993215,+ | |||
|ontology_enrichment_celltype=CL:0000860!1.13e-21!45;CL:0002057!2.90e-21!42;CL:0000766!2.54e-20!76;CL:0000738!1.86e-19!140;CL:0000037!7.58e-18!172;CL:0000566!7.58e-18!172;CL:0000839!3.43e-17!70;CL:0000763!5.28e-17!112;CL:0000049!5.28e-17!112;CL:0000557!8.43e-17!71;CL:0002009!1.14e-16!65;CL:0002032!8.07e-16!165;CL:0000837!8.07e-16!165;CL:0002194!1.05e-15!63;CL:0000576!1.05e-15!63;CL:0000040!1.05e-15!63;CL:0000559!1.05e-15!63;CL:0000988!1.72e-15!182;CL:0002031!4.37e-15!124;CL:0002087!4.95e-14!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.41e-18;33!CL:0002057;3.41e-18;33!CL:0000473;1.21e-13;39!CL:0000234;1.21e-13;39!CL:0000576;6.47e-12;48!CL:0000766;2.87e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.09e-21,42;CL:0002057,1.09e-21,42;CL:0000766,5.37e-20,72;CL:0000473,1.18e-19,48;CL:0000234,1.18e-19,48;CL:0000738,5.32e-19,136;CL:0000037,6.46e-17,168;CL:0000839,8.65e-17,66;CL:0000557,2.19e-16,67;CL:0002009,2.81e-16,61;CL:0000763,4.97e-16,108;CL:0000049,4.97e-16,108;CL:0002194,2.72e-15,59;CL:0000576,2.72e-15,59;CL:0000040,2.72e-15,59;CL:0000559,2.72e-15,59;CL:0002032,6.79e-15,161;CL:0000837,6.79e-15,161;CL:0000988,8.29e-15,177;CL:0002031,1.42e-14,120;CL:0002087,1.61e-13,115 | |||
|ontology_enrichment_development_v019=CL:0002057;5.73e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.37e-15!102;UBERON:0003061!9.37e-15!102;UBERON:0002371!3.00e-14!80;UBERON:0002193!3.87e-14!112;UBERON:0007023!5.54e-13!115;UBERON:0001474!1.02e-12!86;UBERON:0002405!4.92e-12!115;UBERON:0004765!4.59e-10!101;UBERON:0001434!4.59e-10!101;UBERON:0001049!6.95e-07!57;UBERON:0005068!6.95e-07!57;UBERON:0006241!6.95e-07!57;UBERON:0007135!6.95e-07!57 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.52e-14,98;UBERON:0003061,5.52e-14,98;UBERON:0002371,1.29e-13,76;UBERON:0002193,1.64e-13,108;UBERON:0007023,5.66e-13,114;UBERON:0002405,1.63e-12,93;UBERON:0001474,8.64e-12,82;UBERON:0004765,2.24e-08,90;UBERON:0001434,8.13e-08,100;UBERON:0001049,3.72e-07,56;UBERON:0005068,3.72e-07,56;UBERON:0006241,3.72e-07,56;UBERON:0007135,3.72e-07,56 | |||
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| ||
|short_description=p@chr3:19993210..19993215,+ | |||
}} | }} |
Latest revision as of 20:02, 29 July 2015
Short description: | p@chr3:19993210..19993215, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:19993210..19993215, + |
Coexpression cluster: | C3406_CD14_Neutrophils_CD4_CD8_Natural_Eosinophils_Basophils |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.09e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.09e-21 | 42 |
myeloid leukocyte | 5.37e-20 | 72 |
defensive cell | 1.18e-19 | 48 |
phagocyte | 1.18e-19 | 48 |
leukocyte | 5.32e-19 | 136 |
hematopoietic stem cell | 6.46e-17 | 168 |
myeloid lineage restricted progenitor cell | 8.65e-17 | 66 |
granulocyte monocyte progenitor cell | 2.19e-16 | 67 |
macrophage dendritic cell progenitor | 2.81e-16 | 61 |
myeloid cell | 4.97e-16 | 108 |
common myeloid progenitor | 4.97e-16 | 108 |
monopoietic cell | 2.72e-15 | 59 |
monocyte | 2.72e-15 | 59 |
monoblast | 2.72e-15 | 59 |
promonocyte | 2.72e-15 | 59 |
hematopoietic oligopotent progenitor cell | 6.79e-15 | 161 |
hematopoietic multipotent progenitor cell | 6.79e-15 | 161 |
hematopoietic cell | 8.29e-15 | 177 |
hematopoietic lineage restricted progenitor cell | 1.42e-14 | 120 |
nongranular leukocyte | 1.61e-13 | 115 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.52e-14 | 98 |
blood island | 5.52e-14 | 98 |
bone marrow | 1.29e-13 | 76 |
hemolymphoid system | 1.64e-13 | 108 |
adult organism | 5.66e-13 | 114 |
immune system | 1.63e-12 | 93 |
bone element | 8.64e-12 | 82 |
skeletal element | 2.24e-08 | 90 |
skeletal system | 8.13e-08 | 100 |
neural tube | 3.72e-07 | 56 |
neural rod | 3.72e-07 | 56 |
future spinal cord | 3.72e-07 | 56 |
neural keel | 3.72e-07 | 56 |