FFCP PHASE1:Hg19::chr3:22108417..22108426,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:22108417..22108426,- | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_at_chr3:22108417..22108426,- | |description=CAGE_peak_at_chr3:22108417..22108426,- | ||
|id=chr3:22108417..22108426,- | |id=chr3:22108417..22108426,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.79e-195;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p@chr3:22108417..22108426,- | |short_description=p@chr3:22108417..22108426,- | ||
}} | }} | ||
Latest revision as of 20:07, 29 July 2015
| Short description: | p@chr3:22108417..22108426, - |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_at_chr3:22108417..22108426, - |
| Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
| Association with transcript: | NA |
| EntrezGene: | NA |
| HGNC: | NA |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| cerebellum | 1.83e-98 | 6 |
| rhombic lip | 1.83e-98 | 6 |
| regional part of metencephalon | 3.75e-66 | 9 |
| metencephalon | 3.75e-66 | 9 |
| future metencephalon | 3.75e-66 | 9 |
| segmental subdivision of hindbrain | 5.59e-50 | 12 |
| hindbrain | 5.59e-50 | 12 |
| presumptive hindbrain | 5.59e-50 | 12 |
| segmental subdivision of nervous system | 3.04e-46 | 13 |
| posterior neural tube | 2.90e-40 | 15 |
| chordal neural plate | 2.90e-40 | 15 |
| regional part of nervous system | 4.68e-12 | 53 |
| regional part of brain | 4.68e-12 | 53 |
| neural tube | 1.77e-11 | 56 |
| neural rod | 1.77e-11 | 56 |
| future spinal cord | 1.77e-11 | 56 |
| neural keel | 1.77e-11 | 56 |
| brain | 1.53e-09 | 68 |
| future brain | 1.53e-09 | 68 |
| central nervous system | 3.31e-08 | 81 |
| neural plate | 3.31e-08 | 82 |
| presumptive neural plate | 3.31e-08 | 82 |
| neurectoderm | 7.10e-08 | 86 |
| nervous system | 1.68e-07 | 89 |