FFCP PHASE1:Hg19::chr6:113971282..113971295,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-6bp_to_ENST00000427157_5end | |association_with_transcript=-6bp_to_ENST00000427157_5end | ||
|cluster_id=chr6:113971282..113971295,- | |||
|coexpression_cluster_id=C1302 | |||
|description=CAGE_peak_1_at_ENST00000427157_5end | |description=CAGE_peak_1_at_ENST00000427157_5end | ||
|id=chr6:113971282..113971295,- | |id=chr6:113971282..113971295,- | ||
|ontology_enrichment_celltype=CL:0002076!6.22e-25!43;CL:0000223!7.86e-21!59;CL:0002251!7.52e-13!21;CL:0002368!3.52e-12!13;CL:0000244!2.61e-10!4;CL:0000731!2.61e-10!4;CL:0000066!7.53e-10!254;CL:0002159!1.00e-09!13;CL:0002166!1.12e-07!3;CL:0002621!1.37e-07!3;CL:0002328!6.64e-07!3 | |ontology_enrichment_celltype=CL:0002076!6.22e-25!43;CL:0000223!7.86e-21!59;CL:0002251!7.52e-13!21;CL:0002368!3.52e-12!13;CL:0000244!2.61e-10!4;CL:0000731!2.61e-10!4;CL:0000066!7.53e-10!254;CL:0002159!1.00e-09!13;CL:0002166!1.12e-07!3;CL:0002621!1.37e-07!3;CL:0002328!6.64e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000244;9.03e-33;4!CL:0000731;9.03e-33;4!CL:0002251;1.29e-18;20!CL:0002076;6.39e-16;42!CL:0002166;1.39e-11;3!CL:0002621;2.19e-11;3!CL:0002336;3.67e-09;1!CL:0002261;3.67e-09;1!CL:0002170;3.67e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,1.11e-32,4;CL:0000731,1.11e-32,4;CL:0002251,1.36e-18,20;CL:0002076,2.23e-17,42;CL:0000223,3.76e-12,58;CL:0002166,1.04e-11,3;CL:0002621,2.85e-11,3;CL:0000066,2.52e-10,253;CL:0002336,3.25e-09,1;CL:0002261,3.25e-09,1;CL:0002170,3.25e-09,1;CL:0000076,7.18e-09,63 | |||
|ontology_enrichment_development_v019=UBERON:0009143;3.67e-09;1 | |||
|ontology_enrichment_disease=DOID:1749!2.85e-12!14 | |ontology_enrichment_disease=DOID:1749!2.85e-12!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;3.46e-27;14!DOID:3151;9.43e-10;1!DOID:3149;9.43e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,5.46e-27,14;DOID:3151,9.44e-10,1;DOID:3149,9.44e-10,1 | |||
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|ontology_enrichment_uberon_v019=UBERON:0000365;2.77e-26;5!UBERON:0000486;1.28e-23;12!UBERON:0005910;5.94e-22;6!UBERON:0003729;1.67e-21;13!UBERON:0003343;9.43e-19;4!UBERON:0004785;9.43e-19;4!UBERON:0000161;1.39e-14;19!UBERON:0000166;1.39e-14;19!UBERON:0000344;7.83e-14;20!UBERON:0000165;4.34e-13;28!UBERON:0000974;1.07e-12;6!UBERON:0001949;2.19e-11;3!UBERON:0000997;3.67e-09;1!UBERON:0005056;3.67e-09;1!UBERON:0004176;3.67e-09;1!UBERON:0001708;6.60e-09;4!UBERON:0008895;6.60e-09;4!UBERON:0011159;2.72e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,3.26e-26,5;UBERON:0005910,6.80e-22,6;UBERON:0003729,1.97e-21,13;UBERON:0003343,1.00e-18,4;UBERON:0004785,1.00e-18,4;UBERON:0000344,8.69e-14,20;UBERON:0000165,1.35e-12,29;UBERON:0000930,1.35e-12,29;UBERON:0000166,1.67e-12,22;UBERON:0001949,2.85e-11,3;UBERON:0000033,3.87e-10,56;UBERON:0000161,4.41e-10,36;UBERON:0004119,7.93e-10,160;UBERON:0000925,7.93e-10,160;UBERON:0006595,7.93e-10,160;UBERON:0003102,1.53e-09,99;UBERON:0000153,4.97e-09,62;UBERON:0007811,4.97e-09,62;UBERON:0000997,5.28e-09,1;UBERON:0005056,5.28e-09,1;UBERON:0001708,5.30e-09,4;UBERON:0008895,5.30e-09,4;UBERON:0000974,8.34e-08,10;UBERON:0011159,2.28e-07,5;UBERON:0001444,3.84e-07,49 | |||
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| ||
|short_description=p1@ENST00000427157 | |short_description=p1@ENST00000427157 | ||
}} | }} |
Latest revision as of 18:31, 30 July 2015
Short description: | p1@ENST00000427157 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000427157_5end |
Coexpression cluster: | C1302_keratoacanthoma_cervical_immature_salivary_malignant_oral_Keratinocyte |
Association with transcript: | -6bp_to_ENST00000427157_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 1.11e-32 | 4 |
urothelial cell | 1.11e-32 | 4 |
epithelial cell of alimentary canal | 1.36e-18 | 20 |
endo-epithelial cell | 2.23e-17 | 42 |
endodermal cell | 3.76e-12 | 58 |
epithelial cell of Malassez | 1.04e-11 | 3 |
gingival epithelial cell | 2.85e-11 | 3 |
epithelial cell | 2.52e-10 | 253 |
buccal mucosa cell | 3.25e-09 | 1 |
endothelial cell of viscerocranial mucosa | 3.25e-09 | 1 |
keratinized cell of the oral mucosa | 3.25e-09 | 1 |
squamous epithelial cell | 7.18e-09 | 63 |
Ontology term | p-value | n |
---|---|---|
urothelium | 3.26e-26 | 5 |
transitional epithelium | 6.80e-22 | 6 |
mouth mucosa | 1.97e-21 | 13 |
mucosa of oral region | 1.00e-18 | 4 |
respiratory system mucosa | 1.00e-18 | 4 |
mucosa | 8.69e-14 | 20 |
mouth | 1.35e-12 | 29 |
stomodeum | 1.35e-12 | 29 |
oral opening | 1.67e-12 | 22 |
gingival epithelium | 2.85e-11 | 3 |
head | 3.87e-10 | 56 |
orifice | 4.41e-10 | 36 |
endoderm-derived structure | 7.93e-10 | 160 |
endoderm | 7.93e-10 | 160 |
presumptive endoderm | 7.93e-10 | 160 |
surface structure | 1.53e-09 | 99 |
anterior region of body | 4.97e-09 | 62 |
craniocervical region | 4.97e-09 | 62 |
mammalian vulva | 5.28e-09 | 1 |
external female genitalia | 5.28e-09 | 1 |
jaw skeleton | 5.30e-09 | 4 |
splanchnocranium | 5.30e-09 | 4 |
neck | 8.34e-08 | 10 |
primary subdivision of cranial skeletal system | 2.28e-07 | 5 |
subdivision of head | 3.84e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 5.46e-27 | 14 |
skin squamous cell carcinoma | 9.44e-10 | 1 |
keratoacanthoma | 9.44e-10 | 1 |