FFCP PHASE1:Mm9::chr10:19571014..19571027,-: Difference between revisions
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{{FFCP|EntrezGene=76157|HGNC=|UniProt=Q8BGF8,B9EI54|association_with_transcript=237bp_to_ENSMUST00000059805,NM_029529,uc007enk.1_5end|description=CAGE_peak_2_at_Slc35d3_5end|id=chr10:19571014..19571027,-|ontology_enrichment_celltype=CL:0000540!9.45e-11!33;CL:0000047!9.45e-11!33;CL:0000031!9.45e-11!33;CL:0000404!9.45e-11!33;CL:0000393!1.02e-07!39;CL:0000211!1.02e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,1.62e-17,33;CL:0000047,1.62e-17,33;CL:0000031,1.62e-17,33;CL:0000404,1.62e-17,33;CL:0000393,4.24e-14,39;CL:0000211,4.24e-14,39;CL:0002319,2.34e-12,43;CL:0000117,2.79e-12,23;CL:0000337,2.79e-12,23;CL:0000221,5.68e-12,44;CL:0000133,5.68e-12,44;CL:0000107,3.77e-07,9;CL:0002610,4.05e-07,3;CL:0000034,4.91e-07,97;CL:0002612,9.84e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.73e-09!73;UBERON:0005743!5.73e-09!73;UBERON:0004121!1.79e-08!102;UBERON:0000924!1.79e-08!102;UBERON:0006601!1.79e-08!102;UBERON:0000073!3.02e-08!75;UBERON:0001016!3.02e-08!75;UBERON:0002342!8.30e-08!10;UBERON:0005062!8.30e-08!10;UBERON:0002346!8.89e-08!71;UBERON:0003075!8.89e-08!71;UBERON:0007284!8.89e-08!71|ontology_enrichment_uberon_v019_2=UBERON:0002369,4.05e-15,7;UBERON:0006858,4.05e-15,7;UBERON:0001017,3.35e-14,73;UBERON:0001016,1.20e-13,75;UBERON:0002240,1.01e-12,6;UBERON:0005174,1.01e-12,6;UBERON:0001137,1.01e-12,6;UBERON:0001948,1.00e-10,5;UBERON:0002315,1.00e-10,5;UBERON:0004121,2.12e-09,95;UBERON:0000924,2.12e-09,95;UBERON:0006601,2.12e-09,95;UBERON:0003064,3.59e-09,14;UBERON:0003076,6.20e-08,12;UBERON:0003057,6.20e-08,12;UBERON:0002410,3.77e-07,9;UBERON:0004684,4.05e-07,3;UBERON:0002275,4.05e-07,3;UBERON:0010314,7.29e-07,92;UBERON:0002257,9.84e-07,3|phase1_expression=0.640595388419176,0,0,0,0.500895729946347,0.33575854382378,0,0.129123323441576,0,1.40438715793196,0,0,0.171200729931206,0,0,0.202475267389826,0,0.157731082679119,0,0,0.425216450755349,0.595745707205312,2.08959831311148,0,0,0,0,0,0,0,0,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183546752161682,0,0,0,0,0,0,0,0,0,0,0,0,1.01158230429799,2.11596391708813,1.26766280701236,0,0,0,0,0,0,0,0,0,0,3.99911378165325,4.41737081903227,0.367472397644862,0.287536413054709,0,4.40463523997555,2.80912143787413,2.61131106535614,0.791317726381163,0.274462930807229,0,2.23346399201105,2.25105044012672,0.763991238884051,5.00868595305235,2.13557521198654,1.3047961207771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,6.97678053604676,3.46970653532272,7.61163695780353,3.92046345335299,4.97384713823654,1.88141931417128,3.64433114856059,0,0,0,0,0.441683036920787,0.484875253135222,0,0,0.209446706813455,0,1.55759661857696,0.599902730993408,0.762421362438388,1.9472783122627,8.6925114535539,2.76439574648302,0.695297280769106,1.79000820131231,2.0778804455956,4.05603157669394,0,0.248813941220186,0,0,0.260240885925407,0.229902104433473,0,0.30140963567143,0.136072998302656,0,0.187403449119458,0.776110112217047,0.215567992932842,0,0.175951124163949,0,0,0,0.205782136407943,0.199034266818493,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0,0.330418782983798,0,0,0,0.257734922644187,0,0,0.190225626112559,0,0,0.251335208800269,0.795825888164603,0,0,0,0.199141273254367,0.189667900953082,0.799739588268102,0,0,0,0,0,0,0,0,0,1.00107063429656,0.786235980452812,1.12431056192427,0.405720242777006,0.482354319504834,0.25462585178142,0.575392274901621,0.972811360650212,0.274561413188081,0,0.744281895337007,0,0,0,0,0.184753190166605,0.568474235311454,0.325929952884052,0.169745085775188,0.469380496577004,0.335012514883631,0,0,0,0,0.159454768657487,0,0.172684981865896,0.289298117163023,0,0,0,0,2.40825884981688,0.703270119553219,0,0,1.89304931649754,0.390438744296638,3.87762115919038,0.477937595905104,1.33679204449436,0.566153061577665,1.21443210502468,3.21481443702443,1.18586333383957,7.06906896127976,0.283880170416537,0.178065603667255,0.162886959353576,0,0,0.728341908464944,0.302323556964751,0.565815239267694,0.295301892880773,0.307435147943927,0.258428293168221,0.727067458955011,0.712994756769443,0,0,0,0,0,0.258717367565509,0,0.532020700926821,0.356737635204141,0.493647061806363,0.913394847343798,0,0,7.05690873775878,0,0.322928853391811,0.0603129249281559,0,0,0,4.07935664423121,0.341741761595705,0.206386867963223,0.740778109478847,0.376736914009382,0.546776910884101,0,3.39956859987711,3.21888340344413,3.86959926652387,0,0,0.203319467126849,0.108005340821801,0,0.218362563746178,0.134864346384821,0.247960367176008,0,0.129614973291793,0,0,0.299033092087958,0.330916980914195,0,0,0,0.234714477291508,0,0,0,0,0,0.810900861160657,0.718976700153791,0.389762468933385,0.179026695667481,0.198681354781265,0.120195449519969,0.147689527174577,0,0,0,0.0974578807397524,0,0,0,0,0,0,0.579568782096571,0.187682475451182,0,0,0,0,0.920650473014354,0,0.343706364687375,0.685082519770642,0,0,0.45032120322422,0,0,0.103787347584177,0,0.170733605754134,0.486213434136588,0,0.183843508450014,0.888986911206461,0.618105171716683,0.64183841918363,0.505394423527595,0.50695859978048,0.188626341386076,0.561849044819294,0.256100609619477,0.34461281373368,0,0.347652977834566,0.38581844092741,0.412085900803307,0,0,0.532427418478012,0.715308569841963,0,0.658765662907314,0.338458431566706,0.365855945745545,1.31534855718921,0.271608227691724,0,0.474540072496697,0.0985044823755635,0,0.77468420592983,0.192906610981141,0.499621155875892,0.701794825336225,0.859484216193193,0.57386499620653,0.661774257358546,0.231867835620421|short_description=p2@Slc35d3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:76157 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8BGF8,uniprot:B9EI54 | |||
|association_with_transcript=237bp_to_ENSMUST00000059805,NM_029529,uc007enk.1_5end | |||
|cluster_id=chr10:19571014..19571027,- | |||
|description=CAGE_peak_2_at_Slc35d3_5end | |||
|id=chr10:19571014..19571027,- | |||
|ontology_enrichment_celltype=CL:0000540!9.45e-11!33;CL:0000047!9.45e-11!33;CL:0000031!9.45e-11!33;CL:0000404!9.45e-11!33;CL:0000393!1.02e-07!39;CL:0000211!1.02e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.62e-17,33;CL:0000047,1.62e-17,33;CL:0000031,1.62e-17,33;CL:0000404,1.62e-17,33;CL:0000393,4.24e-14,39;CL:0000211,4.24e-14,39;CL:0002319,2.34e-12,43;CL:0000117,2.79e-12,23;CL:0000337,2.79e-12,23;CL:0000221,5.68e-12,44;CL:0000133,5.68e-12,44;CL:0000107,3.77e-07,9;CL:0002610,4.05e-07,3;CL:0000034,4.91e-07,97;CL:0002612,9.84e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.73e-09!73;UBERON:0005743!5.73e-09!73;UBERON:0004121!1.79e-08!102;UBERON:0000924!1.79e-08!102;UBERON:0006601!1.79e-08!102;UBERON:0000073!3.02e-08!75;UBERON:0001016!3.02e-08!75;UBERON:0002342!8.30e-08!10;UBERON:0005062!8.30e-08!10;UBERON:0002346!8.89e-08!71;UBERON:0003075!8.89e-08!71;UBERON:0007284!8.89e-08!71 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002369,4.05e-15,7;UBERON:0006858,4.05e-15,7;UBERON:0001017,3.35e-14,73;UBERON:0001016,1.20e-13,75;UBERON:0002240,1.01e-12,6;UBERON:0005174,1.01e-12,6;UBERON:0001137,1.01e-12,6;UBERON:0001948,1.00e-10,5;UBERON:0002315,1.00e-10,5;UBERON:0004121,2.12e-09,95;UBERON:0000924,2.12e-09,95;UBERON:0006601,2.12e-09,95;UBERON:0003064,3.59e-09,14;UBERON:0003076,6.20e-08,12;UBERON:0003057,6.20e-08,12;UBERON:0002410,3.77e-07,9;UBERON:0004684,4.05e-07,3;UBERON:0002275,4.05e-07,3;UBERON:0010314,7.29e-07,92;UBERON:0002257,9.84e-07,3 | |||
|phase1_expression=0.640595388419176,0,0,0,0.500895729946347,0.33575854382378,0,0.129123323441576,0,1.40438715793196,0,0,0.171200729931206,0,0,0.202475267389826,0,0.157731082679119,0,0,0.425216450755349,0.595745707205312,2.08959831311148,0,0,0,0,0,0,0,0,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183546752161682,0,0,0,0,0,0,0,0,0,0,0,0,1.01158230429799,2.11596391708813,1.26766280701236,0,0,0,0,0,0,0,0,0,0,3.99911378165325,4.41737081903227,0.367472397644862,0.287536413054709,0,4.40463523997555,2.80912143787413,2.61131106535614,0.791317726381163,0.274462930807229,0,2.23346399201105,2.25105044012672,0.763991238884051,5.00868595305235,2.13557521198654,1.3047961207771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,6.97678053604676,3.46970653532272,7.61163695780353,3.92046345335299,4.97384713823654,1.88141931417128,3.64433114856059,0,0,0,0,0.441683036920787,0.484875253135222,0,0,0.209446706813455,0,1.55759661857696,0.599902730993408,0.762421362438388,1.9472783122627,8.6925114535539,2.76439574648302,0.695297280769106,1.79000820131231,2.0778804455956,4.05603157669394,0,0.248813941220186,0,0,0.260240885925407,0.229902104433473,0,0.30140963567143,0.136072998302656,0,0.187403449119458,0.776110112217047,0.215567992932842,0,0.175951124163949,0,0,0,0.205782136407943,0.199034266818493,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0,0.330418782983798,0,0,0,0.257734922644187,0,0,0.190225626112559,0,0,0.251335208800269,0.795825888164603,0,0,0,0.199141273254367,0.189667900953082,0.799739588268102,0,0,0,0,0,0,0,0,0,1.00107063429656,0.786235980452812,1.12431056192427,0.405720242777006,0.482354319504834,0.25462585178142,0.575392274901621,0.972811360650212,0.274561413188081,0,0.744281895337007,0,0,0,0,0.184753190166605,0.568474235311454,0.325929952884052,0.169745085775188,0.469380496577004,0.335012514883631,0,0,0,0,0.159454768657487,0,0.172684981865896,0.289298117163023,0,0,0,0,2.40825884981688,0.703270119553219,0,0,1.89304931649754,0.390438744296638,3.87762115919038,0.477937595905104,1.33679204449436,0.566153061577665,1.21443210502468,3.21481443702443,1.18586333383957,7.06906896127976,0.283880170416537,0.178065603667255,0.162886959353576,0,0,0.728341908464944,0.302323556964751,0.565815239267694,0.295301892880773,0.307435147943927,0.258428293168221,0.727067458955011,0.712994756769443,0,0,0,0,0,0.258717367565509,0,0.532020700926821,0.356737635204141,0.493647061806363,0.913394847343798,0,0,7.05690873775878,0,0.322928853391811,0.0603129249281559,0,0,0,4.07935664423121,0.341741761595705,0.206386867963223,0.740778109478847,0.376736914009382,0.546776910884101,0,3.39956859987711,3.21888340344413,3.86959926652387,0,0,0.203319467126849,0.108005340821801,0,0.218362563746178,0.134864346384821,0.247960367176008,0,0.129614973291793,0,0,0.299033092087958,0.330916980914195,0,0,0,0.234714477291508,0,0,0,0,0,0.810900861160657,0.718976700153791,0.389762468933385,0.179026695667481,0.198681354781265,0.120195449519969,0.147689527174577,0,0,0,0.0974578807397524,0,0,0,0,0,0,0.579568782096571,0.187682475451182,0,0,0,0,0.920650473014354,0,0.343706364687375,0.685082519770642,0,0,0.45032120322422,0,0,0.103787347584177,0,0.170733605754134,0.486213434136588,0,0.183843508450014,0.888986911206461,0.618105171716683,0.64183841918363,0.505394423527595,0.50695859978048,0.188626341386076,0.561849044819294,0.256100609619477,0.34461281373368,0,0.347652977834566,0.38581844092741,0.412085900803307,0,0,0.532427418478012,0.715308569841963,0,0.658765662907314,0.338458431566706,0.365855945745545,1.31534855718921,0.271608227691724,0,0.474540072496697,0.0985044823755635,0,0.77468420592983,0.192906610981141,0.499621155875892,0.701794825336225,0.859484216193193,0.57386499620653,0.661774257358546,0.231867835620421 | |||
|short_description=p2@Slc35d3 | |||
}} |
Revision as of 05:13, 4 August 2015
Short description: | p2@Slc35d3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Slc35d3_5end |
Coexpression cluster: | NA |
Association with transcript: | 237bp_to_ENSMUST00000059805, NM_029529, uc007enk.1_5end |
EntrezGene: | 76157 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.62e-17 | 33 |
neuronal stem cell | 1.62e-17 | 33 |
neuroblast | 1.62e-17 | 33 |
electrically signaling cell | 1.62e-17 | 33 |
electrically responsive cell | 4.24e-14 | 39 |
electrically active cell | 4.24e-14 | 39 |
neural cell | 2.34e-12 | 43 |
CNS neuron (sensu Vertebrata) | 2.79e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.79e-12 | 23 |
ectodermal cell | 5.68e-12 | 44 |
neurectodermal cell | 5.68e-12 | 44 |
autonomic neuron | 3.77e-07 | 9 |
raphe nuclei neuron | 4.05e-07 | 3 |
stem cell | 4.91e-07 | 97 |
neuron of the ventral spinal cord | 9.84e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
adrenal gland | 4.05e-15 | 7 |
adrenal/interrenal gland | 4.05e-15 | 7 |
central nervous system | 3.35e-14 | 73 |
nervous system | 1.20e-13 | 75 |
spinal cord | 1.01e-12 | 6 |
dorsal region element | 1.01e-12 | 6 |
dorsum | 1.01e-12 | 6 |
regional part of spinal cord | 1.00e-10 | 5 |
gray matter of spinal cord | 1.00e-10 | 5 |
ectoderm-derived structure | 2.12e-09 | 95 |
ectoderm | 2.12e-09 | 95 |
presumptive ectoderm | 2.12e-09 | 95 |
intermediate mesoderm | 3.59e-09 | 14 |
posterior neural tube | 6.20e-08 | 12 |
chordal neural plate | 6.20e-08 | 12 |
autonomic nervous system | 3.77e-07 | 9 |
raphe nuclei | 4.05e-07 | 3 |
reticular formation | 4.05e-07 | 3 |
structure with developmental contribution from neural crest | 7.29e-07 | 92 |
ventral horn of spinal cord | 9.84e-07 | 3 |