FFCP PHASE1:Hg19::chrX:48432444..48432466,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5935 | |EntrezGene=5935 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9900 | |HGNC=9900 | ||
|TSSclassifier=strong | |||
|UniProt=P98179 | |UniProt=P98179 | ||
|association_with_transcript=-274bp_to_NM_006743_5end | |||
|cluster_id=chrX:48432444..48432466,+ | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_10_at_RBM3_5end | |||
|id=chrX:48432444..48432466,+ | |||
|ontology_enrichment_celltype=CL:0002057!4.00e-26!42;CL:0000860!2.03e-25!45;CL:0000766!1.90e-22!76;CL:0000557!9.45e-22!71;CL:0000839!1.31e-20!70;CL:0002009!1.21e-19!65;CL:0002194!5.73e-19!63;CL:0000576!5.73e-19!63;CL:0000040!5.73e-19!63;CL:0000559!5.73e-19!63;CL:0000738!2.10e-17!140;CL:0002031!2.82e-16!124;CL:0002087!6.21e-15!119;CL:0000763!2.05e-13!112;CL:0000049!2.05e-13!112;CL:0000988!9.15e-13!182;CL:0000037!3.47e-12!172;CL:0000566!3.47e-12!172;CL:0002032!6.75e-12!165;CL:0000837!6.75e-12!165 | |||
|ontology_enrichment_celltype_v019=CL:0000097;4.74e-22;5!CL:0000860;3.95e-20;33!CL:0002057;3.95e-20;33!CL:0000473;1.75e-14;39!CL:0000234;1.75e-14;39!CL:0000766;4.78e-14;69!CL:0000163;1.57e-12;9!CL:0000576;1.96e-09;48!CL:0001014;3.92e-07;2!CL:0001016;3.92e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,3.67e-23,67;CL:0000097,3.84e-22,5;CL:0002028,3.84e-22,5;CL:0000839,1.08e-19,66;CL:0000766,5.82e-18,72;CL:0000860,7.34e-17,42;CL:0002057,7.34e-17,42;CL:0000473,1.18e-14,48;CL:0000234,1.18e-14,48;CL:0002009,4.06e-14,61;CL:0000763,7.28e-14,108;CL:0000049,7.28e-14,108;CL:0000163,1.40e-12,9;CL:0002031,2.49e-12,120;CL:0002194,1.48e-11,59;CL:0000576,1.48e-11,59;CL:0000040,1.48e-11,59;CL:0000559,1.48e-11,59;CL:0000738,1.07e-10,136;CL:0002032,8.63e-09,161;CL:0000837,8.63e-09,161;CL:0000037,2.35e-08,168;CL:0000988,7.56e-08,177;CL:0001014,3.93e-07,2;CL:0001016,3.93e-07,2 | |||
|ontology_enrichment_development_v019=CL:0002057;3.09e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.65e-21!102;UBERON:0003061!5.65e-21!102;UBERON:0002371!2.85e-19!80;UBERON:0002193!6.59e-19!112;UBERON:0001474!3.52e-18!86;UBERON:0002405!3.54e-14!115;UBERON:0004765!8.22e-14!101;UBERON:0001434!8.22e-14!101;UBERON:0003081!9.06e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0003296;7.92e-13;4!UBERON:0010133;7.92e-13;4!UBERON:0001894;1.04e-07;7!UBERON:0001905;2.35e-07;2!UBERON:0002757;2.35e-07;2!UBERON:0010134;2.35e-07;2!UBERON:0005408;2.35e-07;2!UBERON:0001899;2.35e-07;2!UBERON:0000007;3.92e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.81e-20,76;UBERON:0001474,1.06e-18,82;UBERON:0004765,6.40e-17,90;UBERON:0002405,2.49e-16,93;UBERON:0002390,2.00e-15,98;UBERON:0003061,2.00e-15,98;UBERON:0001434,4.34e-15,100;UBERON:0002193,7.28e-14,108;UBERON:0003296,6.07e-13,4;UBERON:0010133,6.07e-13,4;UBERON:0002204,2.04e-08,167;UBERON:0001894,8.94e-08,7;UBERON:0006222,8.94e-08,7;UBERON:0001905,2.43e-07,2;UBERON:0002757,2.43e-07,2;UBERON:0010134,2.43e-07,2;UBERON:0005408,2.43e-07,2;UBERON:0001899,2.43e-07,2;UBERON:0000007,2.91e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,0,0.309632246632152,0,0,0,0,0,0,0,0.401088894940283,0.434021741431704,0,0,0,0.581592955118259,0.377875943688809,0,0.697287110717054,0.411167888021826,1.23882548358041,0.575384784644301,1.2808035326455,0.945928919554341,1.72372840368309,0.645484683583826,5.41705946377367,0,0.818718450173537,0,0,1.60464513538047,0,0,0.398927315243264,0.426224750532694,0.580418477257168,0.56738522469114,0,0.75374599577023,0,1.3031330682307,0.605399502633369,1.10483290796269,1.26584954976354,0,0.212604299965044,0,0,0.150176892841506,0.16072558669708,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0.196709770113833,0,0.822405995998037,0,0.32592226663359,0.473447805734733,1.94826728407911,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0.68725489096526,0,0,0,0,0,0,0,0,0,0.403213486449465,0,0,0,0,0,0,0,0,0,0.973269740605272,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0.174129737299267,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0,0,0.17859945656816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269421344139376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,63.5535576885767,0,1.65862492432618,0,2.14612136824846,0.126995788584338,0,0,0,0.102827492703324,0,0,0,0,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0,0.179060963239896,0.112085143993527,0.394061520403854,0.215627574859517,0.513372145118994,0,0,0,0,0,0,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0.321707842287215,0,0,0,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0.329607748453519,0,0.398495976502139,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0.139423744278603,0,0.227884111694002,0,0,0,0,0,1.06606955203727,0,0,0.166211681900156,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0.123563938946503,0.208843899010911,0.067401132980677,0,0,0,0.19566461893209,0,0,0,0,0,1.35291077473043,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821154570532092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,1.349843349309,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0.542999601753713,0,0,0,0,0,0.113312091520126,0.146552233678082,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0.573409195690071,0,0,0,0,0.151649117541648,0.285465333544967,0,0,0.28984205722165,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6124909547064,0,0,0.159633859057151,0,0,0.0691572524642179,0,0,0,0,0,0,0.381382095467167,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,5.35701835878287,0,1.82089681270989,0,0,0,0,0.0679697329768317,0,0.118193840883968,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0,0,0,0,0,0,0,0,0,0,0.301925687133347,0.0771741581079447,0,0,0,0.235676547101626,0,0,0,0.339854229375634,0,0.257831551894309,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0.213233981900981,0,0,0,0,0,0.202117188958219,0,0.342233301085281,0,0,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 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| ||
|short_description=p10@RBM3 | |||
}} | }} |
Latest revision as of 19:15, 15 September 2015
Short description: | p10@RBM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_RBM3_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | -274bp_to_NM_006743_5end |
EntrezGene: | RBM3 |
HGNC: | 9900 |
UniProt: | P98179 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 3.67e-23 | 67 |
mast cell | 3.84e-22 | 5 |
basophil mast progenitor cell | 3.84e-22 | 5 |
myeloid lineage restricted progenitor cell | 1.08e-19 | 66 |
myeloid leukocyte | 5.82e-18 | 72 |
classical monocyte | 7.34e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.34e-17 | 42 |
defensive cell | 1.18e-14 | 48 |
phagocyte | 1.18e-14 | 48 |
macrophage dendritic cell progenitor | 4.06e-14 | 61 |
myeloid cell | 7.28e-14 | 108 |
common myeloid progenitor | 7.28e-14 | 108 |
endocrine cell | 1.40e-12 | 9 |
hematopoietic lineage restricted progenitor cell | 2.49e-12 | 120 |
monopoietic cell | 1.48e-11 | 59 |
monocyte | 1.48e-11 | 59 |
monoblast | 1.48e-11 | 59 |
promonocyte | 1.48e-11 | 59 |
leukocyte | 1.07e-10 | 136 |
hematopoietic oligopotent progenitor cell | 8.63e-09 | 161 |
hematopoietic multipotent progenitor cell | 8.63e-09 | 161 |
hematopoietic stem cell | 2.35e-08 | 168 |
hematopoietic cell | 7.56e-08 | 177 |
CD1a-positive Langerhans cell | 3.93e-07 | 2 |
immature CD1a-positive Langerhans cell | 3.93e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.81e-20 | 76 |
bone element | 1.06e-18 | 82 |
skeletal element | 6.40e-17 | 90 |
immune system | 2.49e-16 | 93 |
hematopoietic system | 2.00e-15 | 98 |
blood island | 2.00e-15 | 98 |
skeletal system | 4.34e-15 | 100 |
hemolymphoid system | 7.28e-14 | 108 |
gland of diencephalon | 6.07e-13 | 4 |
neuroendocrine gland | 6.07e-13 | 4 |
musculoskeletal system | 2.04e-08 | 167 |
diencephalon | 8.94e-08 | 7 |
future diencephalon | 8.94e-08 | 7 |
pineal body | 2.43e-07 | 2 |
regional part of epithalamus | 2.43e-07 | 2 |
secretory circumventricular organ | 2.43e-07 | 2 |
circumventricular organ | 2.43e-07 | 2 |
epithalamus | 2.43e-07 | 2 |
pituitary gland | 2.91e-07 | 2 |