FFCP PHASE1:Hg19::chr6:146864655..146864678,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10981 | |EntrezGene=10981 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9772 | |HGNC=9772 | ||
|TSSclassifier=strong | |||
|UniProt=Q13637 | |UniProt=Q13637 | ||
|association_with_transcript=-149bp_to_NM_006834,uc003qln.1_5end | |association_with_transcript=-149bp_to_NM_006834,uc003qln.1_5end | ||
|cluster_id=chr6:146864655..146864678,+ | |||
|description=CAGE_peak_6_at_RAB32_5end | |description=CAGE_peak_6_at_RAB32_5end | ||
|id=chr6:146864655..146864678,+ | |id=chr6:146864655..146864678,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000240;3.08e-13;6!CL:0000311;3.08e-13;6!CL:0000079;3.08e-13;6!CL:0000237;3.08e-13;6!CL:0002328;4.97e-12;3!CL:0000784;4.97e-12;3!CL:0000037;1.20e-09;1!CL:0002336;1.20e-09;1!CL:0002261;1.20e-09;1!CL:0001024;1.20e-09;1!CL:0002170;1.20e-09;1!CL:0002591;1.20e-09;1!CL:0000362;5.36e-09;9!CL:0000312;9.91e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000240,3.50e-13,6;CL:0000311,3.50e-13,6;CL:0000079,3.50e-13,6;CL:0000237,3.50e-13,6;CL:0000036,3.50e-13,6;CL:0000357,3.50e-13,6;CL:0000114,3.50e-13,6;CL:0000784,4.46e-12,3;CL:0002328,7.36e-12,3;CL:0002336,8.91e-10,1;CL:0002261,8.91e-10,1;CL:0002170,8.91e-10,1;CL:0001024,1.48e-09,1;CL:0002591,1.62e-09,1;CL:0000362,5.99e-09,9;CL:0000312,1.23e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000357;3.08e-13;6!CL:0000114;3.08e-13;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000924!1.26e-08!173;UBERON:0006601!1.26e-08!173;UBERON:0004121!2.93e-08!169;UBERON:0000153!9.56e-07!129;UBERON:0007811!9.56e-07!129 | |ontology_enrichment_uberon=UBERON:0000924!1.26e-08!173;UBERON:0006601!1.26e-08!173;UBERON:0004121!2.93e-08!169;UBERON:0000153!9.56e-07!129;UBERON:0007811!9.56e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;5.49e-18;2!UBERON:0005058;5.49e-18;2!UBERON:0009113;5.49e-18;2!UBERON:0004815;4.97e-12;3!UBERON:0002031;4.97e-12;3!UBERON:0004177;9.91e-08;5!UBERON:0005057;9.91e-08;5!UBERON:0002185;1.45e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003351,3.36e-13,6;UBERON:0004815,7.36e-12,3;UBERON:0002031,7.36e-12,3;UBERON:0002370,1.76e-09,4;UBERON:0005058,1.76e-09,4;UBERON:0009113,1.76e-09,4;UBERON:0003295,1.76e-09,4;UBERON:0005562,1.76e-09,4;UBERON:0000485,9.75e-09,9;UBERON:0001042,4.02e-08,10;UBERON:0009145,4.02e-08,10;UBERON:0002185,1.83e-07,5;UBERON:0006562,2.00e-07,11;UBERON:0009722,2.00e-07,11;UBERON:0007690,2.00e-07,11;UBERON:0004807,2.81e-07,28 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,2.09340350391728,0.655324116390517,0.263766978228454,0.123766352960047,0.331397375727916,0,0.602694528023977,0,1.46379839637152,0.369363174230364,0.408001382488506,0.313454721478088,0.572471974262113,0.273748850145768,0.376627918784408,0,0,0,0,0,0.154816123316076,0,1.204823675113,1.10926203050036,0,0,1.17440175733939,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0.0945348171640679,0.221729397462564,0.087834785693126,0.130979075497713,0.364295288292542,0.741568885568859,0,0,0,1.43094374583205,0.571994910780128,1.11437250398869,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0.24406205754817,0,0,0.17859945656816,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0.468642863667593,0,0,0,0.352303495931295,0.161872944368132,0,0,0.245668634623536,0,0,0.247266929278557,0,0,0.336672227908132,0.125118519871964,0,0,0,0,0.113432183160021,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0.169560592310488,0.193260853163297,0,0,0,0.132529768321485,0.348581828608555,0.310983165046111,0.252320850875628,0.36497735907583,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.219500570817251,2.24803506515239,1.10581869652794,1.38882667737794,0,0,0,0.463721619900307,0.117408694235822,0,0,0,0.790204397959275,0,0,0,0,0,0,0.141775097242386,0,0,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.112131084345361,0,0.1466765716419,0,0,0,0,1.04007436911366,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0.197030760201927,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368738337083406,0,0,0.343143423810856,0,0,0,0.303127571446259,0,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0.232420756919918,0,0,0.184161977871793,0,0,0,0.451199612907412,0.308061348417659,0,0,0,0,0.170093705276516,0.215915916102139,0,0,0,0,0,0,0,0,0,0.328014645699706,0.325378394664303,0,0.0915694648183434,0.247528499761764,0.574265537996172,1.30012049207304,0,0.096670718292122,0.154048617114644,0.307007349452259,0.137836572484531,0,0,0.0852266274161009,0.178064071293475,0.165284915360978,0,0,0.30347334256665,0,0,1.3940745403212,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0.136499911407986,0,1.13008116620243,0.551365343546124,0,0,0,0.655894752046633,0.405820753925408,0,0,0,0,0.7133421029625,0,0,0,0.379473173765715,0.349934720244983,0.288666338176536,0.670302275535787,0,0,0,0,0.886860307073351,0,0,0,0,0,0,0,0,0,0.213648142254946,0.962479855263359,0,0,0,1.42283686696828,0,0.399158742865633,0,0.211673582723883,0,0.561594356226918,0.456469358066384,0.626719583092093,0,0,0.963528450622197,1.00899853595524,0,0,0,0.447352215784832,0.166849141711909,0.19538809540204,0,0,0,0.33307196799782,0,0.18714054040822,0,1.57768678274367,0,0.284136146806413,0,0,0,0,0.281338832821026,0.445234820091624,0,0,0,0,0.251932747854276,0.306806047506464,0,0,0.0898683511473268,0.358042349351218,0,0,0,0,0,0.371072392647405,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0.31900115973192,0.0915975934018623,0,5.10966490978682,0.156980256395025,0,0.225595660617181,0.19606253431774,0.335643173951685,0,0,0,0,0,0,0,0.176915129006678,0,0.296521128680622,0.123563938946503,0,0,0,0,0,0.391329237864179,0.242780379534093,0,0,0,0,0.300646838828985,0.518440956986236,0,0,0,0,0,0.416024019039416,0.347119476670262,0.391969589657511,0,0,0.51595809741485,0,0,0.0821154570532092,0,0,0.225980740780532,0.137041924646751,0,0.0633107959558787,0,0.0801588202515337,0,0,0.144090417154106,0,0,0.288109595976299,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0.0787831823072236,0.412079291905832,0.202210631562555,0,0,0,0.408610218334727,0,0.550157746388935,0,0,0,0.182248669974074,0.335434687599266,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0.328370082997356,0.340776043570843,0.113312091520126,0,0,0.129282956361551,0.13223260174269,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0.886068179966986,0.122026264901963,0,0,0,0.18628920882415,0,0.249960815924213,0.151649117541648,0,0,0,0,0.149254802886874,0.233713309847224,0,0,0.251567901752575,0,0,0.151230923763239,0,0,0.159296767163702,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0.512483037175893,0,0,0,0,0,0.163565394255844,0,0,0,0.39997479170986,0.853533837553127,0,0,0,1.258915569475,0,0,0,0,0.873677105536111,0,0.212574920101683,0,0,0.318004350653419,0,0,0.352675943690684,0.3062454773532,0.321146125482298,0,0,0.82046545696302,0,0.345786262321089,0,0,0.0981477185010256,0.471878893390961,0.183428598521679,0,0.381382095467167,0,0.596748666348824,0.0752103283492573,0.60511520611056,0,0,0,0,0.202612753855184,0,0,0.0634158101939068,0,0,0,1.58284119923659,0,0,0.336283722218824,0,0.227662191351298,0,0.115233987555779,0.171488009437418,0.0679697329768317,0.197318320688547,0,0.111231401892069,0,0,0,0,0,0,0.142953088353313,0,0.581207126840626,0.521574816907738,0,0,0.17071847709395,0,0,0,0.170426809518315,0,0,0.31020638566432,0,0.111855431797792,0,0,0,0,0,0.485710993059139,0,0,0.237840181555137,0.22589216407792,0.219881033490858,0,0,0,0,0,0,0.392616934229891,0,0,0,0,0,0,0,0,0.240724100067505,0,0,0,0.788857810965923,0.339957450954573,0.436350690340377,0,0,0,0,0.126166424835079,0,0.126698501011437,0,0,0,0,0.303114792872958,0.535928260312357,0,0.103432995861895,0,0,2.58355639344024,1.24149428591716,0.224263725161227,0,0,0.217716747896961,0.342233301085281,0,0,0,0,0,0,0.0898252021065869,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,2.09340350391728,0.655324116390517,0.263766978228454,0.123766352960047,0.331397375727916,0,0.602694528023977,0,1.46379839637152,0.369363174230364,0.408001382488506,0.313454721478088,0.572471974262113,0.273748850145768,0.376627918784408,0,0,0,0,0,0.154816123316076,0,1.204823675113,1.10926203050036,0,0,1.17440175733939,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0.0945348171640679,0.221729397462564,0.087834785693126,0.130979075497713,0.364295288292542,0.741568885568859,0,0,0,1.43094374583205,0.571994910780128,1.11437250398869,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0.24406205754817,0,0,0.17859945656816,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0.468642863667593,0,0,0,0.352303495931295,0.161872944368132,0,0,0.245668634623536,0,0,0.247266929278557,0,0,0.336672227908132,0.125118519871964,0,0,0,0,0.113432183160021,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0.169560592310488,0.193260853163297,0,0,0,0.132529768321485,0.348581828608555,0.310983165046111,0.252320850875628,0.36497735907583,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.219500570817251,2.24803506515239,1.10581869652794,1.38882667737794,0,0,0,0.463721619900307,0.117408694235822,0,0,0,0.790204397959275,0,0,0,0,0,0,0.141775097242386,0,0,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.112131084345361,0,0.1466765716419,0,0,0,0,1.04007436911366,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0.197030760201927,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368738337083406,0,0,0.343143423810856,0,0,0,0.303127571446259,0,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0.232420756919918,0,0,0.184161977871793,0,0,0,0.451199612907412,0.308061348417659,0,0,0,0,0.170093705276516,0.215915916102139,0,0,0,0,0,0,0,0,0,0.328014645699706,0.325378394664303,0,0.0915694648183434,0.247528499761764,0.574265537996172,1.30012049207304,0,0.096670718292122,0.154048617114644,0.307007349452259,0.137836572484531,0,0,0.0852266274161009,0.178064071293475,0.165284915360978,0,0,0.30347334256665,0,0,1.3940745403212,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0.136499911407986,0,1.13008116620243,0.551365343546124,0,0,0,0.655894752046633,0.405820753925408,0,0,0,0,0.7133421029625,0,0,0,0.379473173765715,0.349934720244983,0.288666338176536,0.670302275535787,0,0,0,0,0.886860307073351,0,0,0,0,0,0,0,0,0,0.213648142254946,0.962479855263359,0,0,0,1.42283686696828,0,0.399158742865633,0,0.211673582723883,0,0.561594356226918,0.456469358066384,0.626719583092093,0,0,0.963528450622197,1.00899853595524,0,0,0,0.447352215784832,0.166849141711909,0.19538809540204,0,0,0,0.33307196799782,0,0.18714054040822,0,1.57768678274367,0,0.284136146806413,0,0,0,0,0.281338832821026,0.445234820091624,0,0,0,0,0.251932747854276,0.306806047506464,0,0,0.0898683511473268,0.358042349351218,0,0,0,0,0,0.371072392647405,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0.31900115973192,0.0915975934018623,0,5.10966490978682,0.156980256395025,0,0.225595660617181,0.19606253431774,0.335643173951685,0,0,0,0,0,0,0,0.176915129006678,0,0.296521128680622,0.123563938946503,0,0,0,0,0,0.391329237864179,0.242780379534093,0,0,0,0,0.300646838828985,0.518440956986236,0,0,0,0,0,0.416024019039416,0.347119476670262,0.391969589657511,0,0,0.51595809741485,0,0,0.0821154570532092,0,0,0.225980740780532,0.137041924646751,0,0.0633107959558787,0,0.0801588202515337,0,0,0.144090417154106,0,0,0.288109595976299,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0.0787831823072236,0.412079291905832,0.202210631562555,0,0,0,0.408610218334727,0,0.550157746388935,0,0,0,0.182248669974074,0.335434687599266,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0.328370082997356,0.340776043570843,0.113312091520126,0,0,0.129282956361551,0.13223260174269,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0.886068179966986,0.122026264901963,0,0,0,0.18628920882415,0,0.249960815924213,0.151649117541648,0,0,0,0,0.149254802886874,0.233713309847224,0,0,0.251567901752575,0,0,0.151230923763239,0,0,0.159296767163702,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0.512483037175893,0,0,0,0,0,0.163565394255844,0,0,0,0.39997479170986,0.853533837553127,0,0,0,1.258915569475,0,0,0,0,0.873677105536111,0,0.212574920101683,0,0,0.318004350653419,0,0,0.352675943690684,0.3062454773532,0.321146125482298,0,0,0.82046545696302,0,0.345786262321089,0,0,0.0981477185010256,0.471878893390961,0.183428598521679,0,0.381382095467167,0,0.596748666348824,0.0752103283492573,0.60511520611056,0,0,0,0,0.202612753855184,0,0,0.0634158101939068,0,0,0,1.58284119923659,0,0,0.336283722218824,0,0.227662191351298,0,0.115233987555779,0.171488009437418,0.0679697329768317,0.197318320688547,0,0.111231401892069,0,0,0,0,0,0,0.142953088353313,0,0.581207126840626,0.521574816907738,0,0,0.17071847709395,0,0,0,0.170426809518315,0,0,0.31020638566432,0,0.111855431797792,0,0,0,0,0,0.485710993059139,0,0,0.237840181555137,0.22589216407792,0.219881033490858,0,0,0,0,0,0,0.392616934229891,0,0,0,0,0,0,0,0,0.240724100067505,0,0,0,0.788857810965923,0.339957450954573,0.436350690340377,0,0,0,0,0.126166424835079,0,0.126698501011437,0,0,0,0,0.303114792872958,0.535928260312357,0,0.103432995861895,0,0,2.58355639344024,1.24149428591716,0.224263725161227,0,0,0.217716747896961,0.342233301085281,0,0,0,0,0,0,0.0898252021065869,0,0.122241444182866,0,0,0,0 | ||
|short_description=p6@RAB32 | |short_description=p6@RAB32 | ||
}} | }} |
Latest revision as of 23:06, 15 September 2015
Short description: | p6@RAB32 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RAB32_5end |
Coexpression cluster: | NA |
Association with transcript: | -149bp_to_NM_006834, uc003qln.1_5end |
EntrezGene: | RAB32 |
HGNC: | 9772 |
UniProt: | Q13637 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stratified squamous epithelial cell | 3.50e-13 | 6 |
keratin accumulating cell | 3.50e-13 | 6 |
stratified epithelial cell | 3.50e-13 | 6 |
keratinizing barrier epithelial cell | 3.50e-13 | 6 |
epithelial fate stem cell | 3.50e-13 | 6 |
stratified epithelial stem cell | 3.50e-13 | 6 |
surface ectodermal cell | 3.50e-13 | 6 |
plasmacytoid dendritic cell | 4.46e-12 | 3 |
bronchial epithelial cell | 7.36e-12 | 3 |
buccal mucosa cell | 8.91e-10 | 1 |
endothelial cell of viscerocranial mucosa | 8.91e-10 | 1 |
keratinized cell of the oral mucosa | 8.91e-10 | 1 |
CD34-positive, CD38-negative hematopoietic stem cell | 1.48e-09 | 1 |
smooth muscle cell of the pulmonary artery | 1.62e-09 | 1 |
epidermal cell | 5.99e-09 | 9 |
keratinocyte | 1.23e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
pharyngeal epithelium | 3.36e-13 | 6 |
lower respiratory tract epithelium | 7.36e-12 | 3 |
epithelium of bronchus | 7.36e-12 | 3 |
thymus | 1.76e-09 | 4 |
hemolymphoid system gland | 1.76e-09 | 4 |
thymic region | 1.76e-09 | 4 |
pharyngeal gland | 1.76e-09 | 4 |
thymus primordium | 1.76e-09 | 4 |
simple columnar epithelium | 9.75e-09 | 9 |
chordate pharynx | 4.02e-08 | 10 |
pharyngeal region of foregut | 4.02e-08 | 10 |
bronchus | 1.83e-07 | 5 |
pharynx | 2.00e-07 | 11 |
entire pharyngeal arch endoderm | 2.00e-07 | 11 |
early pharyngeal endoderm | 2.00e-07 | 11 |
respiratory system epithelium | 2.81e-07 | 28 |