FFCP PHASE1:Hg19::chr2:10263360..10263373,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6241 | |EntrezGene=6241 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10452 | |HGNC=10452 | ||
|TSSclassifier=strong | |||
|UniProt=C9JXC1 | |UniProt=C9JXC1 | ||
|association_with_transcript=62bp_to_ENST00000474701_5end | |association_with_transcript=62bp_to_ENST00000474701_5end | ||
|cluster_id=chr2:10263360..10263373,+ | |||
|coexpression_cluster_id=C4112 | |coexpression_cluster_id=C4112 | ||
|description=CAGE_peak_6_at_RRM2_5end | |description=CAGE_peak_6_at_RRM2_5end | ||
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|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002127;4.25e-08;1!CL:0000911;4.25e-08;1!CL:0000222;4.25e-08;1!CL:1001319;4.25e-08;1!CL:1000600;4.25e-08;1!CL:0000814;4.25e-08;1 | |ontology_enrichment_celltype_v019=CL:0002127;4.25e-08;1!CL:0000911;4.25e-08;1!CL:0000222;4.25e-08;1!CL:1001319;4.25e-08;1!CL:1000600;4.25e-08;1!CL:0000814;4.25e-08;1 | ||
|ontology_enrichment_celltype_v019_2=CL:1001319,2.89e-08,1;CL:1000600,2.89e-08,1;CL:0002127,5.43e-08,1;CL:0000914,5.43e-08,1;CL:0000911,5.43e-08,1;CL:0000814,5.43e-08,1;CL:0002042,5.43e-08,1;CL:0002039,5.43e-08,1;CL:0002040,5.43e-08,1;CL:0002041,5.43e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.08e-17;29 | |ontology_enrichment_development_v019=UBERON:0008947;1.08e-17;29 | ||
|ontology_enrichment_disease=DOID:14566!8.04e-20!239;DOID:162!1.60e-19!235;DOID:0050687!5.19e-15!143;DOID:305!4.44e-14!106;DOID:0050686!3.32e-07!137 | |ontology_enrichment_disease=DOID:14566!8.04e-20!239;DOID:162!1.60e-19!235;DOID:0050687!5.19e-15!143;DOID:305!4.44e-14!106;DOID:0050686!3.32e-07!137 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:305,9.38e-14,106;DOID:0050687,8.54e-11,143;DOID:162,5.07e-09,235;DOID:14566,9.47e-09,239 | |||
|ontology_enrichment_uberon=UBERON:0001557!2.27e-11!19;UBERON:0001737!7.52e-11!9 | |ontology_enrichment_uberon=UBERON:0001557!2.27e-11!19;UBERON:0001737!7.52e-11!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;5.32e-47;9!UBERON:0001557;5.32e-47;9!UBERON:0000072;4.09e-13;37!UBERON:0000065;3.90e-11;44!UBERON:0004645;4.25e-08;1!UBERON:0001256;4.25e-08;1!UBERON:0001259;4.25e-08;1 | |ontology_enrichment_uberon_v019=UBERON:0001737;5.32e-47;9!UBERON:0001557;5.32e-47;9!UBERON:0000072;4.09e-13;37!UBERON:0000065;3.90e-11;44!UBERON:0004645;4.25e-08;1!UBERON:0001256;4.25e-08;1!UBERON:0001259;4.25e-08;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.20e-47,9;UBERON:0001557,1.31e-27,19;UBERON:0008947,2.85e-13,38;UBERON:0003258,2.85e-13,38;UBERON:0000072,6.62e-13,47;UBERON:0000065,5.11e-11,54;UBERON:0004645,2.89e-08,1;UBERON:0001256,2.89e-08,1;UBERON:0001259,2.89e-08,1;UBERON:0001041,1.21e-07,87;UBERON:0001004,1.35e-07,74 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0.376627918784408,0.534893840235659,0.656804715599566,0.708397031823113,0,0,0.154816123316076,0,0,0,0,0.568676929949686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0.263384084775077,0,0,0,0,0,0,0,0.334231370655521,0,0,0,0.512365278902701,0.260118695119756,0.493313713811028,0.552700035571697,0.579606171470105,0,0,0,1.35971211237079,0,0,0,0.95569624297229,0,0,0,0.511946444617674,0,0,0.821127996921047,0,0,0.289648807765598,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0.402829317109147,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0.286836620748814,0,0.560677600142307,0,0,0,0,0.163461903113459,0.151357427644931,0,0,0,0,0,0.117434498643765,0.161872944368132,0.140450806702248,0,0,0,0,0.247266929278557,0,0,0.336672227908132,0.250237039743928,0,0,0,0,0.113432183160021,0,0.213557388818567,0,0,0.103052529238439,0,0,0.168776332241266,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53798840051797,2.36018566109342,0.964044119533928,1.65440959098591,1.74303555273925,1.89816495288877,1.61797569792197,1.17732879075208,1.92373578473195,0,0,0,0,0,0,0,0.882926198829301,0.122988438543114,0,0,0,0,0,0,0,0,0,0.117408694235822,0.288732895522148,0,0,0,0,0,0,0.445893486866185,0,0,0,0.0895585227028483,0,0,0.985326475791887,0,0,0,0,0.507983154337352,0,0,0,0.102827492703324,0.600686115687835,0,0.112131084345361,0.43596006883328,0.2933531432838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.434343920002738,0.205476322550383,0,1.2329365839288,1.18218456121156,0.646882724578552,0.898401253958239,0.76228387266739,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260650843404249,0,0,0.206768026122887,0.215714200818617,0.106727557803444,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0.355123450626254,0.0821271560138091,0,0.348631135379878,0,0,0,0.229628896329213,0.182091168006717,0,0,0.0770153371044148,0.784349769176855,0,0,0,0.170093705276516,0.431831832204279,0,0,0,0,0,0.223874754722178,1.31555925987561,0.522870902049801,0,0,0,0,0.732555718546747,3.13536099698234,0,0,0,0.096670718292122,0.154048617114644,0.307007349452259,0,0,0,0.340906509664404,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0.235624804691373,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0.35667105148125,0,0,0,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0.476463550915578,0,0,0,0,0,0.962479855263359,0.490080431962063,0,0.432807638929335,0.213425530045242,0.797131363644112,0,0.383010740264733,0,0,0,0,0,0,0,0.1605880751037,0.201799707191048,0,0,0,0,0.166849141711909,0.19538809540204,0,0,0,0,0,0,0,0.242721043499027,0.222886768554957,0.284136146806413,0,0,0,0,0,0.111308705022906,0.329607748453519,0.422250816255987,0,0,0.251932747854276,0.409074730008619,0.369254416383208,0,0.179736702294654,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0.472775363535873,2.06846023944879,2.62444152044929,16.1471245287962,0,0,0,0,0,0,0.32681539055697,0.139423744278603,0,0,0,0,0,0.31900115973192,0.274792780205587,0,0,0.156980256395025,0,0.225595660617181,0,0,0,0,0.210998064528027,0.163232808159148,0,0,0,0,0.611030144933625,1.18608451472249,2.10058696209055,0.939797545549098,0,0,0,0.364909578431332,0,0,0,0,0,0.252746318513952,0,0.103688191397247,0,0.330991955875499,0.313932918407225,0,0,0.138674673013139,0.520679215005393,0.0979923974143777,0.0870592065804026,0,0.687944129886466,2.70917727609438,2.92357268344742,2.54557916864949,0,0.264768380074501,0,0,0.19871461170299,0,0.782205530939212,0,0.213452994739353,0,0,0,0,0,0,0,0,0.209205692624666,0,0.288950589901519,0,0,0,0,0.262887354279314,0,0,0,0.998395002494955,0,0,0,0,0,0,0.164831716762333,0.13480708770837,0,0.508039992394707,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0.575745591958336,0,0,0.25426853765475,0.542999601753713,0,0.326587360109409,1.19730191562487,0.082092520749339,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0.138348634936231,0,0.151649117541648,0,0,7.49335849291011,0.724605143054126,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0.155262956876259,0.414706207840855,0,0,0,0,0,0,0,0,0,0.800055529326307,0,0,1.26184898228651,0,0.428883182749851,0,0.226705925512272,0,0,0.179088841081487,0.308801447160972,0.438568099157414,0.706756583783524,0.192914038270915,0.168942440653073,0,0,0,0,0,0,0,0.327609848846413,0.245772908753719,0.211312123358627,0.39997479170986,0.213383459388282,0.344429959321631,0,0.184105950251841,0,0,0,0.431299245586727,0,0,0,0.212574920101683,0.247871528518004,0.558644917973244,0,0.157723490002507,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0.11796972334774,0.183428598521679,0.346576998451015,0,0,0,0,0.20170506870352,0,0.261906694481422,0.163771917510097,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0.115233987555779,0.342976018874837,0,0,0,0.11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| ||
|short_description=p6@RRM2 | |short_description=p6@RRM2 | ||
}} | }} |
Latest revision as of 01:14, 16 September 2015
Short description: | p6@RRM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RRM2_5end |
Coexpression cluster: | C4112_carcinosarcoma_merkel_small_signet_retinoblastoma_carcinoid_mesenchymal |
Association with transcript: | 62bp_to_ENST00000474701_5end |
EntrezGene: | RRM2 |
HGNC: | 10452 |
UniProt: | C9JXC1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bladder cell | 2.89e-08 | 1 |
lower urinary tract cell | 2.89e-08 | 1 |
innate effector T cell | 5.43e-08 | 1 |
immature NK T cell | 5.43e-08 | 1 |
effector T cell | 5.43e-08 | 1 |
mature NK T cell | 5.43e-08 | 1 |
immature NK T cell stage IV | 5.43e-08 | 1 |
immature NK T cell stage I | 5.43e-08 | 1 |
immature NK T cell stage II | 5.43e-08 | 1 |
immature NK T cell stage III | 5.43e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.20e-47 | 9 |
upper respiratory tract | 1.31e-27 | 19 |
respiratory primordium | 2.85e-13 | 38 |
endoderm of foregut | 2.85e-13 | 38 |
segment of respiratory tract | 6.62e-13 | 47 |
respiratory tract | 5.11e-11 | 54 |
urinary bladder urothelium | 2.89e-08 | 1 |
wall of urinary bladder | 2.89e-08 | 1 |
mucosa of urinary bladder | 2.89e-08 | 1 |
foregut | 1.21e-07 | 87 |
respiratory system | 1.35e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.38e-14 | 106 |
cell type cancer | 8.54e-11 | 143 |
cancer | 5.07e-09 | 235 |
disease of cellular proliferation | 9.47e-09 | 239 |