FFCP PHASE1:Hg19::chr2:238322800..238322824,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:238322800..238322824,- to FFCP PHASE1:Hg19::chr2:238322800..238322824,-: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1293 | |EntrezGene=1293 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2213 | |HGNC=2213 | ||
|TSSclassifier=strong | |||
|UniProt=E9PGQ9,C9JNG9 | |UniProt=E9PGQ9,C9JNG9 | ||
|association_with_transcript=0bp_to_ENST00000392004,ENST00000433762_5end | |||
|cluster_id=chr2:238322800..238322824,- | |||
|coexpression_cluster_id=C332 | |||
|description=CAGE_peak_1_at_COL6A3_5end | |||
|id=chr2:238322800..238322824,- | |||
|ontology_enrichment_celltype=CL:0000055!4.69e-42!180;CL:0000057!3.16e-27!75;CL:0000183!1.45e-17!59;CL:0000680!3.22e-17!57;CL:0000056!3.22e-17!57;CL:0000355!3.22e-17!57;CL:0000187!7.34e-17!54;CL:0000393!6.04e-15!60;CL:0000211!6.04e-15!60;CL:0002620!2.13e-12!23;CL:0000192!6.49e-12!42;CL:0000514!6.49e-12!42;CL:0000048!4.37e-08!430;CL:0000359!5.77e-08!32;CL:0000723!4.25e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0002620;5.38e-13;23!CL:0000057;3.57e-12;73!CL:0000134;1.09e-10;55!CL:0000187;1.22e-10;55!CL:0000723;1.41e-10;61!CL:0000048;7.49e-10;58!CL:0000192;2.07e-09;43!CL:0002320;2.17e-09;188!CL:0000393;1.53e-08;61!CL:0000211;1.53e-08;61!CL:0000359;6.47e-08;32!CL:0000034;8.91e-08;69!CL:0002570;6.63e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.45e-29,76;CL:0000680,9.72e-19,58;CL:0000056,9.72e-19,58;CL:0000355,9.72e-19,58;CL:0000187,2.30e-18,55;CL:0000393,9.02e-15,61;CL:0000211,9.02e-15,61;CL:0000192,4.13e-13,43;CL:0000514,4.13e-13,43;CL:0002620,5.37e-13,23;CL:0000048,1.42e-11,427;CL:0000723,1.75e-10,433;CL:0000034,9.46e-10,441;CL:0000359,2.55e-08,32;CL:0002570,6.66e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000355;1.77e-10;58!CL:0000514;2.07e-09;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!7.34e-25!83;UBERON:0002329!7.34e-25!83;UBERON:0003077!7.34e-25!83;UBERON:0003059!7.34e-25!83;UBERON:0007282!7.34e-25!83;UBERON:0009618!7.34e-25!83;UBERON:0007285!7.34e-25!83;UBERON:0004290!2.04e-21!70;UBERON:0005256!5.44e-19!143;UBERON:0002385!4.05e-18!63;UBERON:0001015!4.05e-18!63;UBERON:0000383!4.05e-18!63;UBERON:0001134!7.71e-18!61;UBERON:0002036!7.71e-18!61;UBERON:0003082!7.71e-18!61;UBERON:0000486!2.02e-17!82;UBERON:0000475!1.07e-16!365;UBERON:0000481!6.96e-13!347;UBERON:0002100!1.45e-11!216;UBERON:0003102!2.56e-11!95;UBERON:0000468!7.47e-11!659;UBERON:0002199!3.83e-10!45;UBERON:0002416!3.83e-10!45;UBERON:0003104!7.08e-09!238;UBERON:0009142!7.08e-09!238;UBERON:0002097!2.55e-08!40;UBERON:0000119!1.36e-07!312;UBERON:0001013!1.64e-07!14;UBERON:0000479!1.88e-07!787;UBERON:0004872!2.25e-07!84;UBERON:0000480!2.97e-07!626;UBERON:0000467!3.45e-07!625;UBERON:0007100!4.54e-07!27;UBERON:0000483!5.39e-07!309;UBERON:0000948!6.70e-07!24;UBERON:0005498!6.70e-07!24;UBERON:0004140!6.70e-07!24;UBERON:0009881!6.70e-07!24;UBERON:0004141!6.70e-07!24;UBERON:0003084!6.70e-07!24;UBERON:0007005!6.70e-07!24;UBERON:0004139!6.70e-07!24;UBERON:0004291!6.70e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.73e-10;31!UBERON:0001015;1.73e-10;31!UBERON:0000383;1.73e-10;31!UBERON:0002384;6.32e-10;198!UBERON:0002204;1.46e-08;70!UBERON:0001013;7.61e-08;14!UBERON:0002199;1.83e-07;46!UBERON:0002416;1.83e-07;46!UBERON:0002097;2.68e-07;41!UBERON:0007100;5.84e-07;25!UBERON:0001134;6.49e-07;16!UBERON:0002036;6.49e-07;16!UBERON:0000948;8.74e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,3.45e-23,71;UBERON:0003059,3.45e-23,71;UBERON:0007282,3.45e-23,71;UBERON:0004290,3.45e-23,71;UBERON:0009618,3.45e-23,71;UBERON:0007524,3.60e-23,73;UBERON:0003077,6.16e-23,72;UBERON:0007285,6.16e-23,72;UBERON:0007503,2.27e-22,78;UBERON:0002385,1.10e-19,64;UBERON:0001015,1.10e-19,64;UBERON:0000383,1.10e-19,64;UBERON:0001134,2.16e-19,62;UBERON:0002036,2.16e-19,62;UBERON:0003082,2.16e-19,62;UBERON:0000486,1.56e-18,83;UBERON:0003104,2.95e-18,160;UBERON:0009142,2.95e-18,160;UBERON:0005256,6.03e-17,122;UBERON:0003102,9.83e-13,99;UBERON:0002199,2.85e-11,46;UBERON:0002416,2.85e-11,46;UBERON:0002097,2.55e-09,41;UBERON:0002100,3.29e-09,199;UBERON:0000490,4.49e-09,148;UBERON:0000479,1.19e-08,773;UBERON:0000926,3.15e-08,315;UBERON:0004120,3.15e-08,315;UBERON:0006603,3.15e-08,315;UBERON:0001013,7.66e-08,14;UBERON:0004872,8.64e-08,83;UBERON:0007100,2.25e-07,27;UBERON:0000948,3.39e-07,24;UBERON:0005498,3.39e-07,24;UBERON:0004140,3.39e-07,24;UBERON:0009881,3.39e-07,24;UBERON:0004141,3.39e-07,24;UBERON:0003084,3.39e-07,24;UBERON:0007005,3.39e-07,24;UBERON:0004139,3.39e-07,24;UBERON:0004291,3.39e-07,24 | |||
|phase1_expression=479.994278032811,337.208325128298,137.289589589476,180.131937035635,252.979979445845,40.127572108617,134.248935429205,663.305867098172,500.69284925909,119.180959203232,16.0494268633658,51.3337224505905,37.191143930212,854.606667189122,1013.41317497597,211.110095985857,193.464943495697,213.250546393113,188.342060333136,134.448195419852,169.728575115218,128.516435806016,8.01460763966959,4.65373045247806,16.571628426514,0,0,0,0,0,0.619264493264304,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.84319602106695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,404.719398081176,134.810872800431,139.881642656822,530.231236548159,835.730297030028,241.459147107693,1651.01362607808,477.875442637188,5.0103453096956,4.43458794925128,4.65524364173568,89.786156253682,0,0,0.649094787309367,0.174129737299267,0.26591592103773,0,0,0,0,57.6357178721103,0,0,0,0,0,0,38.4227563701647,9.0374565446461,0,0,4.88124115096339,0,5.67099363517232,0.0892997282840798,0,0,0,0,2.38162267109529,0,0,0,346.886422283332,371.407290712212,443.570755724283,3138.85314085427,315.654860156538,111.014164828177,187.878232484281,149.480534340799,707.693894499069,431.343571967141,274.289073424384,2132.0207258065,1956.69343953408,491.606363987305,352.740886818262,241.880052334846,428.021021100358,347.723550484188,342.846896171703,333.149313497733,1541.15983880319,359.044709502298,1486.65133955691,1218.89093157139,582.56088538028,878.305714270195,421.110231104316,588.67139049737,387.742293083217,772.177689854418,665.49007325535,435.519157830407,492.029642919105,131.921629015104,2323.27517180645,1208.94837810191,877.821934602905,2369.51929468244,1196.74902204599,1599.94775368336,652.153464585891,2592.40446322585,1234.13710737174,1638.04276107006,745.328029306698,341.396472001331,2577.72465126314,668.792428035076,547.511152570564,0,1.90922284413584,0,0.487894824518382,0.265059536642971,22.4254309738171,5.59769697083,3.02785021050754,0,880.810867016864,1025.96929641765,455.845240463186,393.319635043086,524.084503692119,0,0,0,0,0,0,0.134831308160164,0,0,5.90524363699719,300.117395939374,296.333288158608,546.872406354216,0,0,14.7697476670351,0,0,78.5780571167247,0,0,0,0,711.89114710306,537.646283989542,20.2063878835383,2.08674728955138,196.42474545653,0.144366447761074,0.462985512576611,0,0,0,0.246217006087397,0,0.297262324577456,5.62403003920662,10.0789276919316,1.27597587518148,0.0895585227028483,0,6.9008882249738,0,0,8.50045273717165,2.45003920808834,4.16600030307054,12.3185914926808,0,0,100.932743153396,58.3031883627844,0,0,596.425237632974,510.945200672604,304.500562728584,479.856608892871,3268.97991508621,660.181449746236,636.921789220765,261.058666647529,561.226490639994,346.111882136799,525.91738137778,851.576930227927,1431.97841662802,477.479395332846,892.517144964834,791.813261798392,180.565027028822,0.904318131178758,0,2.59929777073348,0,0,0,334.276673410758,219.386297443158,164.032440796826,339.801726748808,71.0948076024327,43.8699359937744,0,0,0,0,35.8273420153673,7.8083912314573,0,6.36561808270525,0.637938751653163,0,0,0,1096.86193596911,463.157902501261,851.77217441717,318.819330726727,246.945720495272,224.410536593289,404.840730214817,824.893259353678,293.35568023222,425.274323012195,712.714067228523,444.514065354046,573.431855489347,1775.72069702959,1426.44721278173,0,0,0,0,23.3009615314696,27.5175166930009,176.156543551332,720.657426560741,255.120025839664,96.4887793895428,150.441931225611,148.146461373262,41.5570586045975,505.653585978908,816.251251264445,930.172169012402,358.285556136699,601.156287773369,0.725156697549733,0,0,778.212329659705,642.599731895704,538.659096653314,2.70719767744447,6.31525764256201,10.1965469992991,13.1525302187935,15.8327443339314,3.4120015221269,0,18.568768784784,21.5918153766405,170.696255652627,98.3311956755513,1.27438136522519,7.47968408035852,0.895499018888713,0,0,1.79515087581472,14.1046297650873,29.2840555197873,67.904026675849,0,0,105.664858991296,45.5042172225565,136.581340367536,1017.36263930629,681.665130732301,741.883259951384,471.401077897095,1673.17773406823,1091.10560501066,445.90571464104,1364.59401035754,0.330569830721956,1.34533047155574,0,0.4046311234222,49.7384737748096,3035.1058357942,336.66900148757,194.061155510936,176.725602065251,381.030650528882,162.529340154138,88.7374297800346,632.669227911435,204.381108368297,122.193954305172,456.777557490731,1551.27883162296,584.22116319202,181.323135886022,441.766755824621,322.581009939864,265.077905277794,146.582299140654,95.106192703805,177.77106853285,324.764070233667,91.6362721013629,260.955862489186,1053.64281615824,887.03627464564,282.520291550607,297.185920171361,41.1332164649556,21.4840933774344,592.087371554822,696.560226673524,163.951584585865,111.22663581781,271.554560841081,216.120907771506,207.600223660725,167.635394196188,432.098976037988,203.507760426948,226.225591463453,564.65608256338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| ||
|short_description=p1@COL6A3 | |||
}} | }} |
Latest revision as of 03:45, 16 September 2015
Short description: | p1@COL6A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_COL6A3_5end |
Coexpression cluster: | C332_Fibroblast_Smooth_Mesenchymal_mesenchymal_Chondrocyte_Skeletal_Pericytes |
Association with transcript: | 0bp_to_ENST00000392004, ENST00000433762_5end |
EntrezGene: | COL6A3 |
HGNC: | 2213 |
UniProt: | E9PGQ9C9JNG9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.45e-29 | 76 |
muscle precursor cell | 9.72e-19 | 58 |
myoblast | 9.72e-19 | 58 |
multi-potent skeletal muscle stem cell | 9.72e-19 | 58 |
muscle cell | 2.30e-18 | 55 |
electrically responsive cell | 9.02e-15 | 61 |
electrically active cell | 9.02e-15 | 61 |
smooth muscle cell | 4.13e-13 | 43 |
smooth muscle myoblast | 4.13e-13 | 43 |
skin fibroblast | 5.37e-13 | 23 |
multi fate stem cell | 1.42e-11 | 427 |
somatic stem cell | 1.75e-10 | 433 |
stem cell | 9.46e-10 | 441 |
vascular associated smooth muscle cell | 2.55e-08 | 32 |
mesenchymal stem cell of adipose | 6.66e-07 | 8 |