FFCP PHASE1:Hg19::chr2:238322913..238322923,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:238322913..238322923,- to FFCP PHASE1:Hg19::chr2:238322913..238322923,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1293 | |EntrezGene=1293 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2213 | |HGNC=2213 | ||
|TSSclassifier=strong | |||
|UniProt=E9PCV6,E7ENL6,A8MT30,D9ZGF2,P12111,Q63HQ4,Q8N4Z1,B4E3U5,E9PGQ9,B7ZMJ7,B7ZW00,E9PFQ6 | |UniProt=E9PCV6,E7ENL6,A8MT30,D9ZGF2,P12111,Q63HQ4,Q8N4Z1,B4E3U5,E9PGQ9,B7ZMJ7,B7ZW00,E9PFQ6 | ||
|association_with_transcript=-63bp_to_ENST00000346358,ENST00000347401,ENST00000353578,ENST00000392003,NM_004369,NM_057164,NM_057165,NM_057166,NM_057167,uc002vwl.2,uc002vwo.2,uc002vwq.2,uc002vwr.2,uc010znj.1,uc010znk.1_5end | |||
|cluster_id=chr2:238322913..238322923,- | |||
|coexpression_cluster_id=C332 | |||
|description=CAGE_peak_12_at_COL6A3_5end | |||
|id=chr2:238322913..238322923,- | |||
|ontology_enrichment_celltype=CL:0000055!2.89e-28!180;CL:0000057!1.15e-26!75;CL:0002620!3.47e-17!23;CL:0000048!9.48e-10!430;CL:0000723!4.40e-09!436;CL:0000183!2.33e-08!59;CL:0000034!3.06e-08!444;CL:0000187!3.39e-08!54;CL:0000680!5.80e-08!57;CL:0000056!5.80e-08!57;CL:0000355!5.80e-08!57;CL:0002320!9.55e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.05e-15;23!CL:0000569;2.15e-09;4!CL:0002540;4.03e-09;6!CL:0000723;2.72e-08;61!CL:0000188;5.75e-08;9!CL:0000057;1.22e-07;73!CL:0000048;1.54e-07;58!CL:0000134;3.57e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.63e-18,76;CL:0002620,6.55e-16,23;CL:0000048,1.57e-10,427;CL:0000723,3.94e-10,433;CL:0000034,1.29e-09,441;CL:0000569,2.00e-09,4;CL:0000011,2.00e-09,4;CL:0002540,2.53e-09,6;CL:0002320,3.14e-09,361;CL:0000188,3.48e-08,9;CL:0000134,1.50e-07,354 | |||
|ontology_enrichment_development_v019=CL:0000011;2.15e-09;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;3.58e-11;5!DOID:450;3.58e-11;5!DOID:66;3.58e-11;5!DOID:423;3.58e-11;5!DOID:0080000;3.58e-11;5!DOID:11722;3.58e-11;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,2.40e-11,5;DOID:450,2.40e-11,5;DOID:66,2.40e-11,5;DOID:423,2.40e-11,5;DOID:0080000,2.40e-11,5;DOID:11722,2.40e-11,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.38e-13!83;UBERON:0002329!3.38e-13!83;UBERON:0003077!3.38e-13!83;UBERON:0003059!3.38e-13!83;UBERON:0007282!3.38e-13!83;UBERON:0009618!3.38e-13!83;UBERON:0007285!3.38e-13!83;UBERON:0004290!1.48e-12!70;UBERON:0002199!7.34e-12!45;UBERON:0002416!7.34e-12!45;UBERON:0003102!3.88e-11!95;UBERON:0002097!4.05e-11!40;UBERON:0002385!6.86e-10!63;UBERON:0001015!6.86e-10!63;UBERON:0000383!6.86e-10!63;UBERON:0000486!1.87e-09!82;UBERON:0001134!3.95e-09!61;UBERON:0002036!3.95e-09!61;UBERON:0003082!3.95e-09!61;UBERON:0005256!5.60e-08!143;UBERON:0007100!8.13e-08!27;UBERON:0000948!1.91e-07!24;UBERON:0005498!1.91e-07!24;UBERON:0004140!1.91e-07!24;UBERON:0009881!1.91e-07!24;UBERON:0004141!1.91e-07!24;UBERON:0003084!1.91e-07!24;UBERON:0007005!1.91e-07!24;UBERON:0004139!1.91e-07!24;UBERON:0004291!1.91e-07!24;UBERON:0002384!2.35e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.59e-08;31!UBERON:0001015;1.59e-08;31!UBERON:0000383;1.59e-08;31!UBERON:0002199;6.24e-08;46!UBERON:0002416;6.24e-08;46!UBERON:0003102;1.49e-07;50!UBERON:0002097;1.87e-07;41!UBERON:0001134;2.91e-07;16!UBERON:0002036;2.91e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,8.52e-11,46;UBERON:0002416,8.52e-11,46;UBERON:0002097,6.32e-10,41;UBERON:0002384,1.23e-09,371;UBERON:0003102,5.60e-07,99 | |||
|phase1_expression=0.54503513781167,0.642301571672949,0.140954404095971,1.0007329835313,0.893922188854576,0,0,0,1.04474251279935,0.737201809504527,0,0,0,0.37129905888014,1.98838425436749,0,0,0,0,0.123121058076788,0.204000691244253,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639312809217652,0.722878304769133,1.00267582127178,0.434539556882471,1.5905718941022,2.43317435151318,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48485975847659,0.633152558322899,1.32409180813219,14.6286676581895,0.709336764396714,0.560677600142307,1.06748995729705,0.49333509683432,0.311211035399766,2.42479209725439,0.490385709340376,3.17850598054356,1.15235184896,1.40592859100278,1.5608003841516,0.570471821544449,0.747243402759005,1.29177948508141,0.971237666208789,0.561803226808994,0.61246251376468,0.368502951935304,1.85986406116378,0,0,0,0,0.841680569770331,0.625592599359821,0.554128230968366,0.438977620880838,0,0.45071417671979,0.340296549480063,6.27863724911017,1.49490172172997,1.48352330811693,10.5031883629541,2.98852334791473,3.34932702059318,0.930584281657949,3.54430297706659,2.72823614451356,6.56327813034698,0.736399189138395,0.646584227275248,10.6502877754984,2.72030665214629,1.86516651541536,0,0,0,0,0,0,0,0,0,4.69348596989448,0.643240938192885,0,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0.4115740113314,0,0,0,0,0,0,0.686271241194102,0,0,0,0,1.62904152655162,2.07986957055916,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0.448524337381443,0.87192013766656,0.36669142910475,0.258543431515556,0,0.845302752556,1.32969058292435,0,1.80045161983499,1.41849132023278,3.72991050622539,0.428933980974443,1.62786481617433,1.64648067356154,2.60588947434988,0.710783897485092,0.791951872933429,0,0,0,0,0,0,0.718874566474748,0,0,0.723906533337896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.613457458595699,0,1.35632511849868,0.415941723061614,0.535286966391485,0.473107245101804,0.468565659970853,0.601892199455438,0,0,0,2.02806085395873,0.868836144680828,1.95801157462741,3.43143423810856,0,0,0,0,0,0,0,2.455391572609,1.12264037773229,0.128139149255701,0,1.76939313257968,0,1.69630663182921,0.887808626565635,0.246381468041427,0,1.39452454151951,0,0,0,0.918515585316854,0.910455840033585,1.04899531967539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0.650060246036521,0,0.580024309752732,3.38906957652218,2.91656981979646,1.65403886981437,2.79292636657511,0.290033387828457,1.53407929348982,1.51354460599453,0,0,0,0,0,7.55549632393536,2.7881490806424,0,0.532306030317022,0,0,0.429374660225974,0.372158369359667,0.316379424718726,0.190630193923825,0,0.42793898803392,1.27281299170375,0,1.2591072030832,0.274537029736055,1.29593642580255,0,0,0.842516912477962,0.975267478179181,0.487426979262569,0,4.09499734223957,1.97967604735198,0,0,0,0,0.578775534266688,1.9676842561399,0,0.92947049429925,0.281695602532241,0.430234056612155,0.687743287091848,0.35667105148125,0.354761064070598,1.05553817648832,0,0.75894634753143,2.0996083214699,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0.276283915531148,0,0,0,0,0,0,0,0.591860433821602,0,1.11136990144637,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0.307801034015188,0,0,0,0,0,0.915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353830258013357,0,0,0,0,0,4.01288823649394,0,0,0,0,0,0,0,0.505492637027904,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0.451961481561065,1.09633539717401,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,1.32597682927218,0.866851769704557,0,0,0,0,0,0.837847203816763,0.229160424011684,1.43574604915363,0.599037001496973,0,0.669514372325618,0.604651252380536,2.88239906833923,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0,0.314727528809989,0,0,0,0,0.662091970365432,0,0,0,0.326587360109409,0,0,0.511164065356265,0,0.146552233678082,1.32506888912221,0,0,0,0,0.106787412567695,0.78602152549833,0.414239055347196,0.496166021811951,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0,3.88062487505873,6.54397267572229,0.554805861502613,2.84104507912634,7.29546915082468,0,2.97492088916001,4.08323494160745,3.57505561340395,1.33069634990671,0.955780602982214,0.449803112163605,2.94999618064893,0.829412415681711,5.0509925766019,0.521745061811734,0.450772826991655,0,1.22061219961398,3.63697318405119,0.322231671127465,0.464033759878494,0.398095888698616,0,1.37358282073117,1.01024846629776,1.26184898228651,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0.736423801007363,0,0,0,0,0,0,0,0,0,0,1.59002175326709,0,0,0,0.6124909547064,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0.397832444232549,0.376051641746286,0.6051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| 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| ||
|short_description=p12@COL6A3 | |||
}} | }} |
Latest revision as of 03:47, 16 September 2015
Short description: | p12@COL6A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_COL6A3_5end |
Coexpression cluster: | C332_Fibroblast_Smooth_Mesenchymal_mesenchymal_Chondrocyte_Skeletal_Pericytes |
Association with transcript: | -63bp_to_ENST00000346358, ENST00000347401, ENST00000353578, ENST00000392003, NM_004369, NM_057164, NM_057165, NM_057166, NM_057167, uc002vwl.2, uc002vwo.2, uc002vwq.2, uc002vwr.2, uc010znj.1, uc010znk.1_5end |
EntrezGene: | COL6A3 |
HGNC: | 2213 |
UniProt: | E9PCV6E7ENL6A8MT30D9ZGF2P12111Q63HQ4Q8N4Z1B4E3U5E9PGQ9B7ZMJ7B7ZW00E9PFQ6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.63e-18 | 76 |
skin fibroblast | 6.55e-16 | 23 |
multi fate stem cell | 1.57e-10 | 427 |
somatic stem cell | 3.94e-10 | 433 |
stem cell | 1.29e-09 | 441 |
cardiac mesenchymal cell | 2.00e-09 | 4 |
migratory trunk neural crest cell | 2.00e-09 | 4 |
mesenchymal stem cell of the bone marrow | 2.53e-09 | 6 |
connective tissue cell | 3.14e-09 | 361 |
cell of skeletal muscle | 3.48e-08 | 9 |
mesenchymal cell | 1.50e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
integument | 8.52e-11 | 46 |
integumental system | 8.52e-11 | 46 |
skin of body | 6.32e-10 | 41 |
connective tissue | 1.23e-09 | 371 |
surface structure | 5.60e-07 | 99 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.40e-11 | 5 |
myotonic disease | 2.40e-11 | 5 |
muscle tissue disease | 2.40e-11 | 5 |
myopathy | 2.40e-11 | 5 |
muscular disease | 2.40e-11 | 5 |
myotonic dystrophy | 2.40e-11 | 5 |