FFCP PHASE1:Hg19::chr17:49230905..49231005,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:49230905..49231005,+ to FFCP PHASE1:Hg19::chr17:49230905..49231005,+: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4830,4831,654364 | |EntrezGene=4830,4831,654364 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7849,33531,7850 | |HGNC=7849,33531,7850 | ||
|TSSclassifier=strong | |||
|UniProt=P15531,P22392,E5RHP0,E7ERL0,Q32Q12 | |UniProt=P15531,P22392,E5RHP0,E7ERL0,Q32Q12 | ||
|association_with_transcript=0bp_to_ENST00000336097,ENST00000376392,ENST00000393193,ENST00000393198,ENST00000475573,ENST00000480143,ENST00000487481,ENST00000511355,ENST00000512768,ENST00000555572,NM_000269,NM_198175,uc002ith.1,uc002iti.1,uc002itj.2,uc002itk.2,uc010dbx.1_5end | |||
|cluster_id=chr17:49230905..49231005,+ | |||
|coexpression_cluster_id=C447 | |||
|description=CAGE_peak_1_at_NME1_5end,CAGE_peak_3_at_NME1-NME2_5end,CAGE_peak_3_at_NME2_5end | |||
|id=chr17:49230905..49231005,+ | |||
|ontology_enrichment_celltype=CL:0000548!4.14e-31!679;CL:0000004!4.14e-31!679;CL:0000255!4.14e-31!679;CL:0000012!7.39e-31!682;CL:0002321!5.40e-30!248;CL:0000220!5.82e-30!246;CL:0000055!3.28e-24!180;CL:0000222!1.74e-22!119;CL:0000066!1.50e-18!254;CL:0000144!6.47e-18!625;CL:0000003!3.92e-17!722;CL:0000393!1.22e-16!60;CL:0000211!1.22e-16!60;CL:0000183!1.61e-16!59;CL:0000680!5.32e-16!57;CL:0000056!5.32e-16!57;CL:0000355!5.32e-16!57;CL:0000187!1.22e-15!54;CL:0000192!1.54e-13!42;CL:0000514!1.54e-13!42;CL:0002371!7.34e-13!591;CL:0000359!3.90e-11!32;CL:0000076!1.14e-07!62;CL:0000221!1.37e-07!71;CL:0000213!1.37e-07!57;CL:0000215!1.37e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.70e-10;32!CL:0000192;1.63e-09;43!CL:0000187;3.85e-09;55!CL:0000393;3.24e-08;61!CL:0000211;3.24e-08;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.71e-30,250;CL:0000222,1.10e-22,121;CL:0000066,1.11e-18,253;CL:0000393,2.94e-16,61;CL:0000211,2.94e-16,61;CL:0000680,1.29e-15,58;CL:0000056,1.29e-15,58;CL:0000355,1.29e-15,58;CL:0000187,3.02e-15,55;CL:0000192,4.08e-13,43;CL:0000514,4.08e-13,43;CL:0000359,3.90e-11,32;CL:0000213,5.71e-08,58;CL:0000215,5.71e-08,58;CL:0000076,1.15e-07,63;CL:0000221,1.35e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000514;1.63e-09;43!CL:0000355;9.68e-09;58!CL:0000222;7.80e-07;121 | |||
|ontology_enrichment_disease=DOID:14566!3.51e-18!239;DOID:162!1.68e-17!235;DOID:0050686!1.86e-08!137;DOID:0050687!1.42e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,3.51e-18,239;DOID:162,1.68e-17,235;DOID:0050686,1.86e-08,137;DOID:0050687,1.42e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0004290!2.86e-16!70;UBERON:0000914!6.89e-16!83;UBERON:0002329!6.89e-16!83;UBERON:0003077!6.89e-16!83;UBERON:0003059!6.89e-16!83;UBERON:0007282!6.89e-16!83;UBERON:0009618!6.89e-16!83;UBERON:0007285!6.89e-16!83;UBERON:0003104!7.02e-16!238;UBERON:0009142!7.02e-16!238;UBERON:0000486!1.50e-15!82;UBERON:0005256!2.19e-15!143;UBERON:0000490!4.37e-15!138;UBERON:0002100!6.06e-14!216;UBERON:0003914!6.90e-14!118;UBERON:0001134!2.56e-13!61;UBERON:0002036!2.56e-13!61;UBERON:0003082!2.56e-13!61;UBERON:0002049!3.12e-13!79;UBERON:0007798!3.12e-13!79;UBERON:0001637!1.63e-12!42;UBERON:0003509!1.63e-12!42;UBERON:0004572!1.63e-12!42;UBERON:0000119!1.92e-12!312;UBERON:0000055!3.12e-12!69;UBERON:0001981!5.88e-12!60;UBERON:0007500!5.88e-12!60;UBERON:0004537!5.88e-12!60;UBERON:0006965!5.88e-12!60;UBERON:0002385!6.08e-12!63;UBERON:0001015!6.08e-12!63;UBERON:0000383!6.08e-12!63;UBERON:0000483!8.60e-12!309;UBERON:0004872!1.71e-10!84;UBERON:0000481!6.95e-10!347;UBERON:0000475!7.06e-09!365;UBERON:0004573!1.04e-08!33;UBERON:0004571!1.04e-08!33;UBERON:0001737!1.25e-07!9;UBERON:0004535!3.57e-07!110 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;5.28e-09;42!UBERON:0003509;5.28e-09;42!UBERON:0004572;5.28e-09;42!UBERON:0003914;1.12e-08;74!UBERON:0007500;1.97e-08;56!UBERON:0001981;1.97e-08;56!UBERON:0004537;1.97e-08;56!UBERON:0004573;7.58e-08;33!UBERON:0004571;7.58e-08;33!UBERON:0001737;1.25e-07;9!UBERON:0001557;1.25e-07;9!UBERON:0000490;2.00e-07;33!UBERON:0000072;2.69e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.09e-18,78;UBERON:0000490,1.31e-17,148;UBERON:0002329,6.10e-16,71;UBERON:0003059,6.10e-16,71;UBERON:0007282,6.10e-16,71;UBERON:0004290,6.10e-16,71;UBERON:0009618,6.10e-16,71;UBERON:0003077,1.70e-15,72;UBERON:0007285,1.70e-15,72;UBERON:0007524,2.65e-15,73;UBERON:0000486,2.85e-15,83;UBERON:0002100,3.19e-14,199;UBERON:0003914,4.41e-14,117;UBERON:0002049,1.69e-13,78;UBERON:0007798,1.69e-13,78;UBERON:0005256,3.97e-13,122;UBERON:0001134,5.20e-13,62;UBERON:0002036,5.20e-13,62;UBERON:0003082,5.20e-13,62;UBERON:0003104,5.75e-13,160;UBERON:0009142,5.75e-13,160;UBERON:0000119,1.13e-12,309;UBERON:0001637,1.63e-12,42;UBERON:0003509,1.63e-12,42;UBERON:0004572,1.63e-12,42;UBERON:0000055,1.65e-12,68;UBERON:0007500,2.92e-12,59;UBERON:0001981,2.92e-12,59;UBERON:0004537,2.92e-12,59;UBERON:0006965,2.92e-12,59;UBERON:0000483,5.17e-12,306;UBERON:0002385,1.14e-11,64;UBERON:0001015,1.14e-11,64;UBERON:0000383,1.14e-11,64;UBERON:0004872,1.06e-10,83;UBERON:0004573,1.04e-08,33;UBERON:0004571,1.04e-08,33;UBERON:0001737,1.25e-07,9;UBERON:0004535,2.68e-07,109 | |||
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|phase1_expression=82.1186274302916,108.334865088837,79.4982839101277,100.07329835313,88.9452577910303,138.701825331959,146.91392933762,232.472913421074,90.3702273571441,388.259619672384,514.279460795679,146.137277955085,114.474868551149,85.7700826013123,87.4889071921698,159.341059709071,178.397580295097,184.038142777618,150.771234826267,212.506946240536,223.380756912457,163.309909890084,134.817149938728,190.939822976673,156.175043655935,135.557381796866,173.478545507735,163.954557476394,7.47392126012918,9.21190555433311,17.0297735647684,344.782959179598,238.856293591152,191.532577266396,195.21734546236,195.909202367667,132.413798140016,11.0799081706375,7.2196001089251,8.89744569934992,11.4196891862361,8.09734165047449,6.18181362322048,5.23433659606433,2.64513160582167,3.63876091781724,4.41615170120801,4.52284676824008,5.88442104700697,6.32923263108731,6.40401766322752,9.93225365532058,4.82643953031266,5.80936215225443,5.41705946377367,4.89430082810772,9.82462140208245,3.82029923556644,3.67300670845083,8.02322567690234,3.19668562899521,4.61791820261403,5.58498241340569,3.40979800426155,6.67481248845743,9.64554881974938,5.60540024096017,6.02996796616184,9.90817544998383,7.60160956467908,12.1079900526674,8.47038562771399,6.96217252369946,26.8294213616166,25.0873073958751,28.0942584981224,13.8164216310189,18.0212271409808,10.125711961916,18.8108410869224,12.9295840179409,13.5171473785829,38.719173781491,26.2146533405823,23.1272406004524,37.5522595858526,30.0296990277009,26.4386122379062,39.6626923670917,39.1162039359499,12.5226853204079,14.6809297342735,9.17455747500549,56.8336712889811,33.6305137788922,128.531433370238,12.5894252872853,11.3973121197258,6.7848494669838,43.9700482877483,14.9924242651452,21.305151258063,17.534405556712,30.6378756434227,15.0249012812167,12.84896588585,10.8321545506006,42.5263181489242,40.1883383960024,38.9717833910712,42.2815527212348,38.543810402762,17.201241326799,13.6445822325754,15.6803285707465,42.6043128542849,20.6939066545037,19.9303918379925,10.6268270648191,20.3881865167422,18.8814201618361,36.1171776890382,18.0690142893327,19.0700050620083,11.2437653897111,18.4686256594333,22.1704559168683,9.47551693156242,10.4301676355568,14.3376159843971,70.7039912310489,226.026189720125,203.940786140431,122.889311810753,117.814408999434,81.8382832128654,160.647761304322,92.9472602278035,128.378281708804,171.396824238562,145.981413821975,27.6365849300174,280.507371985257,304.414027526017,33.4283815464324,22.2886063743062,44.0090849317444,19.0792499444274,24.5957811635455,32.3168026156722,261.968852909317,321.727738569691,204.465755446873,175.810769938367,222.33470119125,177.176019009403,268.349537033265,105.950871259425,80.7589416298832,65.6052401018754,169.188313185842,409.02639287656,89.0826510050819,236.407360662394,185.522506064923,145.022758733346,131.798741731562,153.602059379252,288.23527843586,292.373823146984,226.437355497983,1.31780417436063,0,254.242832399098,68.582129333954,160.820749814016,72.9574586280836,68.8407889797153,147.187378612318,193.433772049096,216.700461331301,199.8007142179,65.3543174339509,138.482570887639,204.000455085596,109.58277761493,65.6840553907199,292.198825496744,257.532063385014,438.692830767681,237.175056035708,233.342348805161,268.385341762362,256.182271424901,167.202266257758,198.991594045064,72.8446757289146,83.1602000097437,81.8453535912023,317.646315316371,254.390822202948,263.109346110205,163.905261032273,114.704543810452,129.937375780728,174.391555809642,75.1190294532984,303.204225586736,71.2176853684782,85.2093981386084,126.099481189939,94.8287863626711,119.747038975066,66.9865404118636,112.042347511617,74.7679151828809,137.288740272129,79.264205112652,78.3344637445967,70.3160347161832,69.2268705407398,149.113105376908,187.534015095399,142.43324878135,110.462178839288,108.412137057043,120.388047949911,124.445452453875,126.767591670645,106.148920335739,146.850735209616,160.955015352441,184.610448149183,109.994200430983,205.821032815196,69.1908212767649,127.050788773847,495.468878566866,518.397921990163,541.069762088417,503.602279496111,505.698189738475,550.705106956855,568.448795203253,564.725376630746,651.761683867185,135.082448196311,244.020686417996,221.838392107625,205.812195939759,67.1801684555704,56.0211513506247,70.8947888017685,119.63649994137,77.6057047207047,230.758704851517,112.274541973024,392.282118869092,154.7140885415,131.938534350905,309.192081739498,414.933979326552,277.116176688525,93.6717672198621,162.376224128141,144.366447761074,166.67478452758,131.465619194107,222.047435826556,242.093097710754,33.9779468400608,65.2871899738473,57.6688909680266,224.961201568265,124.306774867156,196.07495948622,132.36749655481,171.183389784724,272.96846756563,49.7589870274903,44.2883623086527,14.3056399723133,7.35011762426503,9.97315224068402,134.933025370859,90.9132452828701,85.5687364633343,148.833028039754,193.521341267655,185.011323631853,98.0384663922883,210.582176400587,223.647515311473,192.21964713671,120.481239086249,75.10785362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9 | ||
|short_description=p1@NME1,p3@NME1-NME2,p3@NME2 | |||
}} | }} |
Latest revision as of 05:05, 16 September 2015
Short description: | p1@NME1, p3@NME1-NME2, p3@NME2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NME1_5end, CAGE_peak_3_at_NME1-NME2_5end, CAGE_peak_3_at_NME2_5end |
Coexpression cluster: | C447_Alveolar_Bronchial_Smooth_Renal_Tracheal_Keratocytes_Hepatic |
Association with transcript: | 0bp_to_ENST00000336097, ENST00000376392, ENST00000393193, ENST00000393198, ENST00000475573, ENST00000480143, ENST00000487481, ENST00000511355, ENST00000512768, ENST00000555572, NM_000269, NM_198175, uc002ith.1, uc002iti.1, uc002itj.2, uc002itk.2, uc010dbx.1_5end |
EntrezGene: | 4830,4831,654364 |
HGNC: | 33531, 7850&submit=Submit 7849, 33531, 7850 |
UniProt: | P15531P22392E5RHP0E7ERL0Q32Q12 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.71e-30 | 250 |
mesodermal cell | 1.10e-22 | 121 |
epithelial cell | 1.11e-18 | 253 |
electrically responsive cell | 2.94e-16 | 61 |
electrically active cell | 2.94e-16 | 61 |
muscle precursor cell | 1.29e-15 | 58 |
myoblast | 1.29e-15 | 58 |
multi-potent skeletal muscle stem cell | 1.29e-15 | 58 |
muscle cell | 3.02e-15 | 55 |
smooth muscle cell | 4.08e-13 | 43 |
smooth muscle myoblast | 4.08e-13 | 43 |
vascular associated smooth muscle cell | 3.90e-11 | 32 |
lining cell | 5.71e-08 | 58 |
barrier cell | 5.71e-08 | 58 |
squamous epithelial cell | 1.15e-07 | 63 |
ectodermal cell | 1.35e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 3.51e-18 | 239 |
cancer | 1.68e-17 | 235 |
organ system cancer | 1.86e-08 | 137 |
cell type cancer | 1.42e-07 | 143 |