FFCP PHASE1:Hg19::chr17:5322479..5322499,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84268 | |EntrezGene=84268 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28641 | |HGNC=28641 | ||
|TSSclassifier=strong | |||
|UniProt=E9PDG9,Q86UA6,E9PES3,F5GYE1,F5H3Q7,B3KTT3,B4DI36 | |UniProt=E9PDG9,Q86UA6,E9PES3,F5GYE1,F5H3Q7,B3KTT3,B4DI36 | ||
|association_with_transcript=-461bp_to_ENST00000381208,ENST00000381209,ENST00000405578,ENST00000536255,ENST00000539417,ENST00000540734,NM_001033002,NM_001160243,NM_001160244,NM_001160246,NM_001160266,NM_001160267,NR_027678,NR_027679,NR_027680,NR_027681,NR_027682,NR_027683,NR_027684, | |association_with_transcript=-461bp_to_ENST00000381208,ENST00000381209,ENST00000405578,ENST00000536255,ENST00000539417,ENST00000540734,NM_001033002,NM_001160243,NM_001160244,NM_001160246,NM_001160266,NM_001160267,NR_027678,NR_027679,NR_027680,NR_027681,NR_027682,NR_027683,NR_027684,N | ||
|cluster_id=chr17:5322479..5322499,+ | |||
|coexpression_cluster_id=C47 | |coexpression_cluster_id=C47 | ||
|description=CAGE_peak_3_at_RPAIN_5end | |description=CAGE_peak_3_at_RPAIN_5end | ||
|id=chr17:5322479..5322499,+ | |id=chr17:5322479..5322499,+ | ||
|ontology_enrichment_celltype=CL:0000542!4.36e-21!53;CL:0000051!4.36e-21!53;CL:0000838!1.49e-20!52;CL:0000945!2.18e-18!24;CL:0000826!2.18e-18!24;CL:0002087!1.56e-15!119;CL:0000738!8.99e-15!140;CL:0002031!1.62e-13!124;CL:0000236!2.37e-13!14;CL:0000988!3.39e-11!182;CL:0000037!4.71e-11!172;CL:0000566!4.71e-11!172;CL:0002032!3.46e-09!165;CL:0000837!3.46e-09!165;CL:0002393!9.61e-08!9;CL:0002397!9.61e-08!9;CL:0000624!8.42e-07!6 | |ontology_enrichment_celltype=CL:0000542!4.36e-21!53;CL:0000051!4.36e-21!53;CL:0000838!1.49e-20!52;CL:0000945!2.18e-18!24;CL:0000826!2.18e-18!24;CL:0002087!1.56e-15!119;CL:0000738!8.99e-15!140;CL:0002031!1.62e-13!124;CL:0000236!2.37e-13!14;CL:0000988!3.39e-11!182;CL:0000037!4.71e-11!172;CL:0000566!4.71e-11!172;CL:0002032!3.46e-09!165;CL:0000837!3.46e-09!165;CL:0002393!9.61e-08!9;CL:0002397!9.61e-08!9;CL:0000624!8.42e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000236;1.31e-29;13!CL:0000945;9.11e-20;24!CL:0000542;3.48e-17;53!CL:0000624;6.89e-16;6!CL:0000898;6.41e-09;3!CL:0000875;2.52e-08;3!CL:0002396;2.52e-08;3!CL:0000791;4.54e-08;18!CL:0000789;4.54e-08;18!CL:0002419;4.54e-08;18!CL:0000623;1.48e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,3.12e-27,14;CL:0000838,9.96e-26,52;CL:0000542,4.21e-25,53;CL:0000051,4.21e-25,53;CL:0000945,8.21e-20,24;CL:0000826,8.21e-20,24;CL:0002087,5.83e-18,115;CL:0000738,5.24e-17,136;CL:0002031,8.51e-17,120;CL:0000624,6.82e-16,6;CL:0002393,4.07e-12,9;CL:0002397,4.07e-12,9;CL:0000037,6.87e-12,168;CL:0002032,5.26e-11,161;CL:0000837,5.26e-11,161;CL:0000988,8.43e-11,177;CL:0000898,6.98e-09,3;CL:0000875,1.85e-08,3;CL:0002396,1.85e-08,3;CL:0000623,5.03e-08,3;CL:0000825,5.03e-08,3;CL:0000791,5.62e-08,18;CL:0000789,5.62e-08,18;CL:0002420,5.62e-08,18;CL:0002419,5.62e-08,18;CL:0000790,5.62e-08,18 | |||
|ontology_enrichment_development_v019=CL:0000051;3.48e-17;53!CL:0000790;4.54e-08;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.15e-11!15;UBERON:0000179!1.15e-11!15;UBERON:0000463!1.15e-11!15 | |ontology_enrichment_uberon=UBERON:0000178!1.15e-11!15;UBERON:0000179!1.15e-11!15;UBERON:0000463!1.15e-11!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;9.47e-18;15!UBERON:0000179;9.47e-18;15!UBERON:0000463;9.47e-18;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,9.47e-18,15;UBERON:0000179,9.47e-18,15;UBERON:0000463,9.47e-18,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0.376627918784408,0.993374274723366,0.328402357799783,0.787107813136792,1.18009283054671,0,0.464448369948228,0,0,0.369754010166788,5.34523684004081,1.56386155736164,0.587200878669695,1.66198622559563,1.00272223735071,0.434021741431704,0.223915474239924,0,0,0.145398238779565,0,0.485168122375632,0.232429036905685,0,0,0,0.256160706529101,0,0.344745680736619,0,0,0.188242339542605,0,0,0.612167784741805,0.320929027076094,1.27867425159808,0.329851300186716,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0.633765858935825,1.06302149982522,1.04829322754188,0.22465726229299,0.300353785683013,0,1.42506371870624,3.77941686678271,2.73996230646951,17.5996244461323,16.3841583378639,16.9006758234075,21.3365111283254,14.8146515203325,22.4153451582248,15.2040320740518,19.0810750907073,14.2303242277362,12.9192181661607,11.8504700718821,0,2.80254281490768,1.31692042387539,2.9506465517075,3.93010762749165,2.2616164889946,0.668745981562712,9.77766799900771,8.5220605032252,1.94826728407911,0,5.30290633454707,3.98761010250518,2.70803863765016,0.384273959177026,0.650296737799391,0.328875809207352,0.276350017785848,1.15921234294021,1.33457906845854,1.07016331235885,0,0.339928028092699,2.29932296161153,2.06176467289578,1.01207876807801,0.637130828648193,0,0,0.301150238155546,0.383959833463255,0,0,0,1.00803371612366,0.802320587350522,2.31719046212478,0,0,0.12786256184353,0,0,0,0,0,0.0945348171640679,0,0,0.261958150995425,0,0,0,0,0,0.238490624305342,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0.488124115096339,0,0,0.267899184852239,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,1.06748995729705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0.179389635688862,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0.243947412259191,0,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0.144366447761074,0.462985512576611,0.190254152234598,0,0,0,0,0,0.93733833986777,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97030760201927,1.94064817373566,1.41177339907723,0.508189248444927,0,0,0.335032530668698,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06768026122887,2.5885704098234,0.960548020230999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276242966807689,0,0,0,0,0.308061348417659,0,0,0.422206515571503,0,0.170093705276516,0,0,0.270946437543853,0,0.509752546090077,0.831076008928724,0,0.219259876645935,0,0,0,0,0.721287081534056,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0.464845549297286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58510321173008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,1.01489521846434,1.52927441428475,2.27858874869665,2.38231775457789,1.64544909234478,1.29694662238543,2.16012574895246,1.58625035258854,0,0,1.71528151186722,0.557409525377156,0.28853842595289,0.284567373393656,0,0.199579371432817,0,0,0,0,0,0,0,0.169291777801603,0.321176150207399,0,0,0.687010689511529,0,0,0.166849141711909,0.19538809540204,0,0,0,0,0,0.748562161632879,0,0,0.111443384277478,0.284136146806413,0.95497793895076,0.296964680832639,0.921482106297696,0,0,0,0,0.422250816255987,0,1.38141957765574,0.503865495708552,0.102268682502155,0.861593638227486,0,0.0898683511473268,1.07412704805365,0.511572370226872,0.295930216910801,2.3948309234694,0,0,0,0,0.260427761085233,0,0,0,0,0.236387681767936,0.344743373241465,0,0,0,0,0,0,0,0.219385397153973,0,0.278847488557207,0,0,0,0.179515288819544,0.54323685961004,0,0.0915975934018623,1.5991043280559,0,0,0,0,0,0,0,0,0,2.12202650606892,0,0.216388639742091,0,0.353830258013357,0.611030144933625,0.889563386041866,0.247127877893006,0.208843899010911,0,0,0,3.64909578431332,1.36965233252463,0.242780379534093,2.36750641709634,0,0.30607276163049,0.063186579628488,1.80388103297391,0.311064574191741,0,0,0,0,3.13070500632772,0,1.38847790668105,0.195984794828755,0.174118413160805,0.698906672968121,0,0,0.219267951258557,0,0.0969890164884194,0.264768380074501,0.225980740780532,0,0,0,0.586654148204409,0,0.213452994739353,0,1.29681375438695,0,0.171594997861965,0.14405479798815,0,0.942776138467182,0,0,0,0,0,0,0,0.429765441419957,0.262887354279314,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0.0984274815147488,0.254019996197353,0,0,0.482259445395058,0.550157746388935,0.415440338029185,1.349843349309,7.7380195455795,0.121499113316049,0.335434687599266,0.0788057072991982,0.314727528809989,0.105600336519406,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0.213574825135389,0.157204305099666,0,0.496166021811951,0.395223263795889,0.487170393523584,0.638341257770182,0,0,0.306345576763462,0.327872630709804,0.157054096250234,0,0,0,0,0,0.0620964029413835,0,0,0,0.570930667089935,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0.380805212168795,0.40687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| 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| ||
|short_description=p3@RPAIN | |short_description=p3@RPAIN | ||
}} | }} |
Latest revision as of 06:46, 16 September 2015
Short description: | p3@RPAIN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RPAIN_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | -461bp_to_ENST00000381208, ENST00000381209, ENST00000405578, ENST00000536255, ENST00000539417, ENST00000540734, NM_001033002, NM_001160243, NM_001160244, NM_001160246, NM_001160266, NM_001160267, NR_027678, NR_027679, NR_027680, NR_027681, NR_027682, NR_027683, NR_027684, N |
EntrezGene: | RPAIN |
HGNC: | 28641 |
UniProt: | E9PDG9Q86UA6E9PES3F5GYE1F5H3Q7B3KTT3B4DI36 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 3.12e-27 | 14 |
lymphoid lineage restricted progenitor cell | 9.96e-26 | 52 |
lymphocyte | 4.21e-25 | 53 |
common lymphoid progenitor | 4.21e-25 | 53 |
lymphocyte of B lineage | 8.21e-20 | 24 |
pro-B cell | 8.21e-20 | 24 |
nongranular leukocyte | 5.83e-18 | 115 |
leukocyte | 5.24e-17 | 136 |
hematopoietic lineage restricted progenitor cell | 8.51e-17 | 120 |
CD4-positive, alpha-beta T cell | 6.82e-16 | 6 |
intermediate monocyte | 4.07e-12 | 9 |
CD14-positive, CD16-positive monocyte | 4.07e-12 | 9 |
hematopoietic stem cell | 6.87e-12 | 168 |
hematopoietic oligopotent progenitor cell | 5.26e-11 | 161 |
hematopoietic multipotent progenitor cell | 5.26e-11 | 161 |
hematopoietic cell | 8.43e-11 | 177 |
naive T cell | 6.98e-09 | 3 |
non-classical monocyte | 1.85e-08 | 3 |
CD14-low, CD16-positive monocyte | 1.85e-08 | 3 |
natural killer cell | 5.03e-08 | 3 |
pro-NK cell | 5.03e-08 | 3 |
mature alpha-beta T cell | 5.62e-08 | 18 |
alpha-beta T cell | 5.62e-08 | 18 |
immature T cell | 5.62e-08 | 18 |
mature T cell | 5.62e-08 | 18 |
immature alpha-beta T cell | 5.62e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
blood | 9.47e-18 | 15 |
haemolymphatic fluid | 9.47e-18 | 15 |
organism substance | 9.47e-18 | 15 |