FFCP PHASE1:Hg19::chr12:110434148..110434155,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9815 | |EntrezGene=9815 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4273 | |HGNC=4273 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=17bp_to_ENST00000548643_5end | |association_with_transcript=17bp_to_ENST00000548643_5end | ||
|cluster_id=chr12:110434148..110434155,- | |||
|description=CAGE_peak_4_at_GIT2_5end | |description=CAGE_peak_4_at_GIT2_5end | ||
|id=chr12:110434148..110434155,- | |id=chr12:110434148..110434155,- | ||
|ontology_enrichment_celltype=CL:0000094;6.27e-08;8 | |ontology_enrichment_celltype=CL:0000738!1.21e-11!140;CL:0000766!3.14e-11!76;CL:0000037!6.91e-11!172;CL:0000566!6.91e-11!172;CL:0002032!2.16e-09!165;CL:0000837!2.16e-09!165;CL:0002087!4.70e-09!119;CL:0000763!7.56e-09!112;CL:0000049!7.56e-09!112;CL:0000988!1.45e-08!182;CL:0002194!1.86e-08!63;CL:0000576!1.86e-08!63;CL:0000040!1.86e-08!63;CL:0000559!1.86e-08!63;CL:0002009!2.86e-08!65;CL:0000557!3.31e-08!71;CL:0002031!1.16e-07!124;CL:0000839!1.73e-07!70 | ||
| | |ontology_enrichment_celltype_v019=CL:0000094;6.27e-08;8 | ||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.86e-13,72;CL:0000738,2.40e-11,136;CL:0000037,8.20e-11,168;CL:0002194,3.10e-10,59;CL:0000576,3.10e-10,59;CL:0000040,3.10e-10,59;CL:0000559,3.10e-10,59;CL:0000763,1.58e-09,108;CL:0000049,1.58e-09,108;CL:0002009,1.74e-09,61;CL:0002087,2.42e-09,115;CL:0000988,4.79e-09,177;CL:0002032,5.92e-09,161;CL:0000837,5.92e-09,161;CL:0000557,8.21e-09,67;CL:0000839,2.45e-08,66;CL:0000094,9.70e-08,8;CL:0000473,1.89e-07,48;CL:0000234,1.89e-07,48;CL:0002031,5.18e-07,120 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.44e-08!112;UBERON:0002371!1.18e-07!80;UBERON:0002390!1.22e-07!102;UBERON:0003061!1.22e-07!102;UBERON:0002405!2.82e-07!115;UBERON:0001474!8.99e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,4.30e-10,108;UBERON:0002405,4.57e-09,93;UBERON:0002390,5.34e-09,98;UBERON:0003061,5.34e-09,98;UBERON:0002371,2.92e-08,76;UBERON:0001049,1.72e-07,56;UBERON:0005068,1.72e-07,56;UBERON:0006241,1.72e-07,56;UBERON:0007135,1.72e-07,56;UBERON:0001474,4.25e-07,82;UBERON:0000073,7.79e-07,53;UBERON:0002616,7.79e-07,53 | |||
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| ||
|short_description=p4@GIT2 | |short_description=p4@GIT2 | ||
}} | }} |
Latest revision as of 07:42, 16 September 2015
Short description: | p4@GIT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GIT2_5end |
Coexpression cluster: | NA |
Association with transcript: | 17bp_to_ENST00000548643_5end |
EntrezGene: | GIT2 |
HGNC: | 4273 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.86e-13 | 72 |
leukocyte | 2.40e-11 | 136 |
hematopoietic stem cell | 8.20e-11 | 168 |
monopoietic cell | 3.10e-10 | 59 |
monocyte | 3.10e-10 | 59 |
monoblast | 3.10e-10 | 59 |
promonocyte | 3.10e-10 | 59 |
myeloid cell | 1.58e-09 | 108 |
common myeloid progenitor | 1.58e-09 | 108 |
macrophage dendritic cell progenitor | 1.74e-09 | 61 |
nongranular leukocyte | 2.42e-09 | 115 |
hematopoietic cell | 4.79e-09 | 177 |
hematopoietic oligopotent progenitor cell | 5.92e-09 | 161 |
hematopoietic multipotent progenitor cell | 5.92e-09 | 161 |
granulocyte monocyte progenitor cell | 8.21e-09 | 67 |
myeloid lineage restricted progenitor cell | 2.45e-08 | 66 |
granulocyte | 9.70e-08 | 8 |
defensive cell | 1.89e-07 | 48 |
phagocyte | 1.89e-07 | 48 |
hematopoietic lineage restricted progenitor cell | 5.18e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 4.30e-10 | 108 |
immune system | 4.57e-09 | 93 |
hematopoietic system | 5.34e-09 | 98 |
blood island | 5.34e-09 | 98 |
bone marrow | 2.92e-08 | 76 |
neural tube | 1.72e-07 | 56 |
neural rod | 1.72e-07 | 56 |
future spinal cord | 1.72e-07 | 56 |
neural keel | 1.72e-07 | 56 |
bone element | 4.25e-07 | 82 |
regional part of nervous system | 7.79e-07 | 53 |
regional part of brain | 7.79e-07 | 53 |