FFCP PHASE1:Hg19::chr1:11751799..11751806,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=374946 | |EntrezGene=374946 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25054 | |HGNC=25054 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NBI3 | |UniProt=Q8NBI3 | ||
|association_with_transcript=13bp_to_ENST00000294485_5end | |association_with_transcript=13bp_to_ENST00000294485_5end | ||
|cluster_id=chr1:11751799..11751806,+ | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_3_at_C1orf187_5end | |description=CAGE_peak_3_at_C1orf187_5end | ||
|id=chr1:11751799..11751806,+ | |id=chr1:11751799..11751806,+ | ||
|ontology_enrichment_celltype=CL:0002319!5.34e-21!25;CL:0000047!6.72e-19!8;CL:0000133!6.11e-17!59;CL:0000540!1.91e-14!6;CL:0000031!1.91e-14!6;CL:0000404!1.91e-14!6;CL:0000221!5.41e-13!71;CL:0002322!2.85e-11!5;CL:0000128!3.08e-11!7;CL:0000126!3.08e-11!7;CL:0000127!3.08e-11!7;CL:0002453!3.08e-11!7;CL:0000064!4.22e-08!3;CL:0005012!4.22e-08!3;CL:0000067!4.22e-08!3;CL:0002304!4.22e-08!3;CL:0002603!4.85e-08!3;CL:0000095!5.15e-08!17;CL:0000123!5.15e-08!17;CL:0002321!7.81e-08!248;CL:0000220!6.69e-07!246;CL:0002605!6.75e-07!3;CL:0000333!7.49e-07!41 | |ontology_enrichment_celltype=CL:0002319!5.34e-21!25;CL:0000047!6.72e-19!8;CL:0000133!6.11e-17!59;CL:0000540!1.91e-14!6;CL:0000031!1.91e-14!6;CL:0000404!1.91e-14!6;CL:0000221!5.41e-13!71;CL:0002322!2.85e-11!5;CL:0000128!3.08e-11!7;CL:0000126!3.08e-11!7;CL:0000127!3.08e-11!7;CL:0002453!3.08e-11!7;CL:0000064!4.22e-08!3;CL:0005012!4.22e-08!3;CL:0000067!4.22e-08!3;CL:0002304!4.22e-08!3;CL:0002603!4.85e-08!3;CL:0000095!5.15e-08!17;CL:0000123!5.15e-08!17;CL:0002321!7.81e-08!248;CL:0000220!6.69e-07!246;CL:0002605!6.75e-07!3;CL:0000333!7.49e-07!41 | ||
|ontology_enrichment_celltype_v019=CL:0000047;7.63e-23;2!CL:0002319;2.18e-19;25!CL:0002603;8.75e-16;3!CL:0000342;2.60e-12;1!CL:0002565;2.60e-12;1!CL:0002591;2.60e-12;1!CL:0000540;3.02e-08;6!CL:0000404;3.02e-08;6!CL:0000128;2.82e-07;7!CL:0000126;2.82e-07;7!CL:0000127;2.82e-07;7!CL:0000123;5.57e-07;2!CL:0000242;5.57e-07;2!CL:0002600;8.76e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,4.19e-22,8;CL:0002319,2.01e-19,25;CL:0002603,6.26e-16,3;CL:0002591,3.08e-12,1;CL:0000342,4.31e-12,1;CL:0002565,4.31e-12,1;CL:0000133,1.09e-10,59;CL:0000221,1.18e-08,72;CL:0000540,3.63e-08,6;CL:0000031,3.63e-08,6;CL:0000404,3.63e-08,6;CL:0000128,2.45e-07,7;CL:0000126,2.45e-07,7;CL:0000127,2.45e-07,7;CL:0002453,2.45e-07,7;CL:0000242,5.73e-07,2;CL:0002600,9.02e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000031;3.02e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000488!2.83e-10!4;UBERON:0001017!3.23e-09!82;UBERON:0005743!1.60e-08!86;UBERON:0001778!4.22e-08!3;UBERON:0001775!4.22e-08!3;UBERON:0000073!5.73e-08!94;UBERON:0001016!5.73e-08!94;UBERON:0007625!1.92e-07!11;UBERON:0000924!3.33e-07!173;UBERON:0006601!3.33e-07!173;UBERON:0002346!3.77e-07!90;UBERON:0004121!5.97e-07!169;UBERON:0003075!6.60e-07!86;UBERON:0007284!6.60e-07!86;UBERON:0002203!8.54e-07!6;UBERON:0001768!8.54e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0002506;2.60e-12;1!UBERON:0001769;2.60e-12;1!UBERON:0000488;6.37e-12;4!UBERON:0007625;1.49e-09;11!UBERON:0010371;1.63e-08;31!UBERON:0002037;2.38e-08;6!UBERON:0002203;3.02e-08;6!UBERON:0001768;3.02e-08;6!UBERON:0002200;3.02e-08;6!UBERON:0001801;1.29e-07;14!UBERON:0000078;8.76e-07;2!UBERON:0002012;8.76e-07;2!UBERON:0008886;8.76e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002506,4.31e-12,1;UBERON:0001769,4.31e-12,1;UBERON:0000488,9.37e-12,4;UBERON:0004121,1.75e-10,171;UBERON:0000924,1.75e-10,171;UBERON:0006601,1.75e-10,171;UBERON:0001017,9.23e-10,81;UBERON:0003075,1.05e-09,82;UBERON:0007284,1.05e-09,82;UBERON:0007625,2.03e-09,11;UBERON:0010371,3.00e-09,104;UBERON:0002346,3.30e-09,86;UBERON:0001016,1.08e-08,89;UBERON:0002037,2.02e-08,6;UBERON:0006215,2.02e-08,6;UBERON:0002203,3.90e-08,6;UBERON:0001768,3.90e-08,6;UBERON:0002200,3.90e-08,6;UBERON:0001801,1.64e-07,14;UBERON:0000078,9.54e-07,2;UBERON:0007497,9.54e-07,2;UBERON:0003643,9.54e-07,2;UBERON:0003504,9.54e-07,2;UBERON:0003469,9.54e-07,2;UBERON:0003496,9.54e-07,2;UBERON:0002012,9.54e-07,2;UBERON:0008886,9.54e-07,2;UBERON:0007303,9.54e-07,2;UBERON:0002061,9.54e-07,2;UBERON:0005432,9.54e-07,2;UBERON:0004363,9.54e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.84681587115182,2.24400760368678,0.313454721478088,0.286235987131057,0.410623275218653,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0.328875809207352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,1.5905718941022,0.486634870302636,0.661743720148475,1.10864698731282,0.87834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0.208994966536811,0,0,0,0.402829317109147,0,0,0,0,0,0,0.112611480483322,0,0,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0.302714855289863,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731842236777572,0.132529768321485,0.348581828608555,0.518305275076852,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02940686179115,0,0,0,0,0,0,0,1.04337364477569,0.469634776943287,0.144366447761074,0.462985512576611,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.25248486685276,0,0,0,0,0,0,0,0.224262168690721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.256686072559497,1.52456774533478,1.30139853857622,0.773288812777695,1.00509759200609,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0.143124886741991,0,0,0,0.255897791311334,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,1.13008116620243,0,0,0.438450885253763,1.15755106853338,0.655894752046633,0,0,0.281695602532241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0.144269212976445,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.694499979733169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,5.81538247097931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643012593860077,1.2378549293751,0.83088067605837,0.2249738915515,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,0,0.468334905806882,3.04334160082733,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,0,0,0,0,0,0.371807292777007,0,0,0.0788617450012534,0,0,0,0,0,0,0,6.80593579798639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.28184885410932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397901550322736,0,0,0.439762066981716,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,5.23620828408453,0,0,0,0,0.252332849670158,1.85751472338282,0,0.203977659483963,0.534434810531121,0.18378979906969,0.250707539292375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162806537221949,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.84681587115182,2.24400760368678,0.313454721478088,0.286235987131057,0.410623275218653,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0.328875809207352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,1.5905718941022,0.486634870302636,0.661743720148475,1.10864698731282,0.87834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0.208994966536811,0,0,0,0.402829317109147,0,0,0,0,0,0,0.112611480483322,0,0,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0.302714855289863,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731842236777572,0.132529768321485,0.348581828608555,0.518305275076852,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02940686179115,0,0,0,0,0,0,0,1.04337364477569,0.469634776943287,0.144366447761074,0.462985512576611,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.25248486685276,0,0,0,0,0,0,0,0.224262168690721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.256686072559497,1.52456774533478,1.30139853857622,0.773288812777695,1.00509759200609,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0.143124886741991,0,0,0,0.255897791311334,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,1.13008116620243,0,0,0.438450885253763,1.15755106853338,0.655894752046633,0,0,0.281695602532241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0.144269212976445,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.694499979733169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,5.81538247097931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643012593860077,1.2378549293751,0.83088067605837,0.2249738915515,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,0,0.468334905806882,3.04334160082733,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,0,0,0,0,0,0.371807292777007,0,0,0.0788617450012534,0,0,0,0,0,0,0,6.80593579798639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.28184885410932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397901550322736,0,0,0.439762066981716,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,5.23620828408453,0,0,0,0,0.252332849670158,1.85751472338282,0,0.203977659483963,0.534434810531121,0.18378979906969,0.250707539292375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162806537221949,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@C1orf187 | |short_description=p3@C1orf187 | ||
}} | }} |
Latest revision as of 09:55, 16 September 2015
Short description: | p3@C1orf187 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_C1orf187_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | 13bp_to_ENST00000294485_5end |
EntrezGene: | C1orf187 |
HGNC: | 25054 |
UniProt: | Q8NBI3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 4.19e-22 | 8 |
neural cell | 2.01e-19 | 25 |
astrocyte of the cerebellum | 6.26e-16 | 3 |
smooth muscle cell of the pulmonary artery | 3.08e-12 | 1 |
pigment cell (sensu Vertebrata) | 4.31e-12 | 1 |
iris pigment epithelial cell | 4.31e-12 | 1 |
neurectodermal cell | 1.09e-10 | 59 |
ectodermal cell | 1.18e-08 | 72 |
neuron | 3.63e-08 | 6 |
neuroblast | 3.63e-08 | 6 |
electrically signaling cell | 3.63e-08 | 6 |
oligodendrocyte | 2.45e-07 | 7 |
macroglial cell | 2.45e-07 | 7 |
astrocyte | 2.45e-07 | 7 |
oligodendrocyte precursor cell | 2.45e-07 | 7 |
Merkel cell | 5.73e-07 | 2 |
smooth muscle cell of trachea | 9.02e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
iris epithelium | 4.31e-12 | 1 |
iris | 4.31e-12 | 1 |
atypical epithelium | 9.37e-12 | 4 |
ectoderm-derived structure | 1.75e-10 | 171 |
ectoderm | 1.75e-10 | 171 |
presumptive ectoderm | 1.75e-10 | 171 |
central nervous system | 9.23e-10 | 81 |
neural plate | 1.05e-09 | 82 |
presumptive neural plate | 1.05e-09 | 82 |
pigment epithelium of eye | 2.03e-09 | 11 |
ecto-epithelium | 3.00e-09 | 104 |
neurectoderm | 3.30e-09 | 86 |
nervous system | 1.08e-08 | 89 |
cerebellum | 2.02e-08 | 6 |
rhombic lip | 2.02e-08 | 6 |
vasculature of eye | 3.90e-08 | 6 |
uvea | 3.90e-08 | 6 |
vasculature of head | 3.90e-08 | 6 |
anterior segment of eyeball | 1.64e-07 | 14 |
mixed ectoderm/mesoderm/endoderm-derived structure | 9.54e-07 | 2 |
developing epithelial placode | 9.54e-07 | 2 |
respiratory system arterial blood vessel | 9.54e-07 | 2 |
respiratory system blood vessel | 9.54e-07 | 2 |
respiratory system artery | 9.54e-07 | 2 |
head blood vessel | 9.54e-07 | 2 |
pulmonary artery | 9.54e-07 | 2 |
pulmonary vascular system | 9.54e-07 | 2 |
pharyngeal vasculature | 9.54e-07 | 2 |
truncus arteriosus | 9.54e-07 | 2 |
aortic sac | 9.54e-07 | 2 |
pharyngeal arch artery | 9.54e-07 | 2 |