FFCP PHASE1:Hg19::chr2:127413704..127413758,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2995 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4704 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000459787,ENST00000484700_5end | |||
|cluster_id=chr2:127413704..127413758,+ | |||
|coexpression_cluster_id=C14 | |||
|description=CAGE_peak_1_at_GYPC_5end | |||
|id=chr2:127413704..127413758,+ | |||
|ontology_enrichment_celltype=CL:0000048!2.19e-19!430;CL:0000034!5.75e-18!444;CL:0000723!2.88e-17!436;CL:0002320!2.86e-15!365;CL:0000134!2.45e-13!358;CL:0000219!2.28e-11!390;CL:0000988!1.55e-09!182;CL:0000791!1.20e-08!18;CL:0000789!1.20e-08!18;CL:0002420!1.20e-08!18;CL:0002419!1.20e-08!18;CL:0000790!1.20e-08!18;CL:0002371!1.53e-08!591;CL:0000037!3.39e-08!172;CL:0000566!3.39e-08!172;CL:0002032!4.65e-08!165;CL:0000837!4.65e-08!165;CL:0000084!6.35e-08!25;CL:0000827!6.35e-08!25;CL:0000542!7.81e-08!53;CL:0000051!7.81e-08!53;CL:0000838!8.70e-08!52;CL:0000144!2.05e-07!625;CL:0000183!5.02e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.17e-08;18!CL:0000789;1.17e-08;18!CL:0002419;1.17e-08;18!CL:0000084;6.39e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,1.20e-20,427;CL:0000034,4.13e-19,441;CL:0000723,2.17e-18,433;CL:0002320,3.70e-16,361;CL:0000134,3.66e-14,354;CL:0000219,4.65e-12,386;CL:0000988,2.91e-10,177;CL:0000037,3.77e-09,168;CL:0002032,5.21e-09,161;CL:0000837,5.21e-09,161;CL:0000791,1.15e-08,18;CL:0000789,1.15e-08,18;CL:0002420,1.15e-08,18;CL:0002419,1.15e-08,18;CL:0000790,1.15e-08,18;CL:0000084,6.08e-08,25;CL:0000827,6.08e-08,25;CL:0000542,6.51e-08,53;CL:0000051,6.51e-08,53;CL:0000838,7.24e-08,52;CL:0002087,9.56e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000790;1.17e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!7.26e-14!375;UBERON:0003081!1.00e-10!216;UBERON:0001009!5.55e-10!113;UBERON:0004535!1.95e-09!110;UBERON:0000178!3.11e-07!15;UBERON:0000179!3.11e-07!15;UBERON:0000463!3.11e-07!15;UBERON:0004290!5.00e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0002193;7.77e-08;42!UBERON:0000178;3.05e-07;15!UBERON:0000179;3.05e-07;15!UBERON:0000463;3.05e-07;15!UBERON:0002390;3.95e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,9.45e-15,371;UBERON:0003081,1.48e-10,203;UBERON:0000926,4.61e-10,315;UBERON:0004120,4.61e-10,315;UBERON:0006603,4.61e-10,315;UBERON:0001009,9.01e-10,112;UBERON:0004535,3.16e-09,109;UBERON:0007503,5.38e-09,78;UBERON:0002329,2.88e-07,71;UBERON:0003059,2.88e-07,71;UBERON:0007282,2.88e-07,71;UBERON:0004290,2.88e-07,71;UBERON:0009618,2.88e-07,71;UBERON:0000178,2.99e-07,15;UBERON:0000179,2.99e-07,15;UBERON:0000463,2.99e-07,15;UBERON:0007524,3.96e-07,73;UBERON:0003077,5.57e-07,72;UBERON:0007285,5.57e-07,72 | |||
|phase1_expression=31.4303596138063,80.0735959352277,44.4006372902309,50.0366491765652,94.755752018585,50.5956343978214,136.781934210888,53.0644693678538,131.115185356319,51.1126587923138,41.8680700783457,247.275633251355,349.227479174473,100.003213191718,169.675456372693,139.843630461969,150.07093747797,161.398529975609,136.133250862551,40.7530702234168,98.1243324884857,83.6924106346494,20.036519099174,24.2267732379005,34.1475979697864,52.4960097488425,45.5658271447199,45.888385505875,71.1989341096516,57.9582391126791,62.5457138196947,0,0.90361775633475,0.369754010166788,0,0,402.526202328076,72.0194031091441,75.4047122487733,89.6254896056468,223.019812342965,134.091977731858,182.363501885004,46.091241693122,53.2805080601221,50.2149006658779,51.599246193062,58.3858400990993,61.9412741790207,59.8400176030073,71.21267641509,57.2286996330376,63.0884595748012,63.257498991215,92.0900108841524,51.9548857137589,52.9437931112221,38.4277158401095,54.4829328420207,39.4742703303595,47.310947309129,65.9702600373432,76.9929718419499,81.8351521022773,92.5767471225183,94.1859472987292,92.8005151003407,68.3396369498342,73.0076085788282,57.5550438468559,87.7829278818385,74.0238048335005,78.4826720853393,23.6605920669375,25.5125159958052,35.0129937998988,20.3314822375156,24.629010426007,26.6804473917153,20.8059302931111,17.703584270719,25.2076532195195,93.278009564501,123.427326145242,115.636203002262,87.479695626134,106.905728538615,101.156429431989,119.64912197406,105.899966753425,87.0895842737456,135.064553555316,136.471542440707,259.055804014891,267.362584542193,250.214880536323,110.944310344202,171.352692558636,192.64860456254,170.02866581232,258.456357440437,274.126279520411,270.809152486997,132.132801865816,136.107929253375,142.889362006436,125.923796650732,154.990496868067,150.478665126779,275.269052306554,330.79097128966,256.475730875521,265.284661496926,318.908667082938,325.105479033478,180.275164231828,208.471948519445,229.543133582397,130.052121698024,165.65401544853,207.044538326341,201.495833423055,169.095858724339,161.135143443413,154.914100924909,150.827109552039,183.932671310314,151.406664161774,175.975648825548,184.506290546686,136.531845135819,146.883488275096,166.860643205807,62.1675342101454,73.6966728634758,55.041677205113,78.7333087580588,111.926020169606,12.6676654999851,17.9600811944677,19.9384963523396,29.5357815247342,0,0.370784442784429,4.21911611751088,8.53235712766409,13.827627893962,15.2633999555419,22.307801520425,13.0010125465348,0.39752481473341,18.9251610923347,0.694281003215189,5.08777147731609,18.038475757026,0.825354125820202,6.06085402956751,84.7606970075399,113.133671534374,74.9774172592861,361.740726764014,223.519999081243,489.100363326532,68.3853329443316,0,17.0562481022592,23.800113498374,12.4998743336488,16.8648301212472,4.74632829784064,10.2592976601028,30.3094960102945,50.4114343392823,0.436094052142534,50.6911390729225,30.3913227994991,9.26864265692532,37.001924076597,52.8455889475552,103.725356026327,109.951465601596,37.2467998109911,70.9561160711467,115.312335291653,89.086737196835,183.596559733302,167.0910180992,275.796325268379,140.159874496814,54.7652948682671,126.284135066272,56.7208628449384,47.5906456442307,43.1183976575903,66.1459514865854,133.275234283268,137.733266307295,114.048274299077,106.324779589779,219.348888227064,589.266876289316,68.5127983793049,74.4455193238187,34.910078551007,32.0453663243012,45.9731693698529,111.176163590882,64.3160478517319,8.61070251306537,54.0300193710976,51.287520080614,8.40255069036326,47.6102685081588,10.0479810617795,52.2988366291767,4.89451363499672,21.0463931148189,9.34004964703224,61.7654819889829,80.8230284094059,10.6502877754984,20.1504196455281,23.0602405542263,0,0,0,16.3444766213658,17.4939294184361,37.879225375463,47.8914074171011,35.0725982717124,13.5041622858057,145.498065066729,139.583283587856,139.516270566005,78.4781798374045,91.6786941720374,0,0,0,0,0,0,0.134831308160164,0,0,348.409374582834,279.081129868857,151.047662158624,301.367858340361,1.26755034821831,5.89696330006576,31.3118650541144,0,0,32.7694517670184,0,0,0.100528972411631,0.370353780634118,336.885787690876,201.747348344238,23.0930147240437,26.8958539542178,26.5343648972957,229.109552596824,344.461221356998,201.09863891197,0,0,42.1031080409449,17.7843241505821,33.5906426772526,0,0.16798212819886,0.141775097242386,5.46306988487375,4.35950907770943,12.2682457332868,0.492663237895943,3.87413109658195,20.7328115540772,13.5472756211944,19.1888498808098,108.517901345317,342.643617725775,425.499333372471,443.077635198807,159.382613690151,391.947690486312,263.817797318024,172.233345554474,208.388912902308,79.6453784015517,55.9746529231178,557.944055528937,79.458458740264,143.872521072415,183.053088964004,64.3018435655355,83.6909878937342,82.0580311369586,114.23941693286,310.922179889297,94.6726387297884,48.2089552754728,131.139629085999,83.9468985309435,68.7281779695856,56.6496748090191,72.8803105717196,223.78775637979,183.323838372726,94.8752727673642,39.5381011561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| |||
|short_description=p1@GYPC | |||
}} |
Latest revision as of 19:37, 16 September 2015
Short description: | p1@GYPC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GYPC_5end |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | 0bp_to_ENST00000459787, ENST00000484700_5end |
EntrezGene: | GYPC |
HGNC: | 4704 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 1.20e-20 | 427 |
stem cell | 4.13e-19 | 441 |
somatic stem cell | 2.17e-18 | 433 |
connective tissue cell | 3.70e-16 | 361 |
mesenchymal cell | 3.66e-14 | 354 |
motile cell | 4.65e-12 | 386 |
hematopoietic cell | 2.91e-10 | 177 |
hematopoietic stem cell | 3.77e-09 | 168 |
hematopoietic oligopotent progenitor cell | 5.21e-09 | 161 |
hematopoietic multipotent progenitor cell | 5.21e-09 | 161 |
mature alpha-beta T cell | 1.15e-08 | 18 |
alpha-beta T cell | 1.15e-08 | 18 |
immature T cell | 1.15e-08 | 18 |
mature T cell | 1.15e-08 | 18 |
immature alpha-beta T cell | 1.15e-08 | 18 |
T cell | 6.08e-08 | 25 |
pro-T cell | 6.08e-08 | 25 |
lymphocyte | 6.51e-08 | 53 |
common lymphoid progenitor | 6.51e-08 | 53 |
lymphoid lineage restricted progenitor cell | 7.24e-08 | 52 |
nongranular leukocyte | 9.56e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 9.45e-15 | 371 |
lateral plate mesoderm | 1.48e-10 | 203 |
mesoderm | 4.61e-10 | 315 |
mesoderm-derived structure | 4.61e-10 | 315 |
presumptive mesoderm | 4.61e-10 | 315 |
circulatory system | 9.01e-10 | 112 |
cardiovascular system | 3.16e-09 | 109 |
epithelial vesicle | 5.38e-09 | 78 |
somite | 2.88e-07 | 71 |
presomitic mesoderm | 2.88e-07 | 71 |
presumptive segmental plate | 2.88e-07 | 71 |
dermomyotome | 2.88e-07 | 71 |
trunk paraxial mesoderm | 2.88e-07 | 71 |
blood | 2.99e-07 | 15 |
haemolymphatic fluid | 2.99e-07 | 15 |
organism substance | 2.99e-07 | 15 |
dense mesenchyme tissue | 3.96e-07 | 73 |
paraxial mesoderm | 5.57e-07 | 72 |
presumptive paraxial mesoderm | 5.57e-07 | 72 |