FFCP PHASE1:Hg19::chr2:127413704..127413758,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:127413704..127413758,+ to FFCP PHASE1:Hg19::chr2:127413704..127413758,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2995 | |EntrezGene=2995 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4704 | |HGNC=4704 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000459787,ENST00000484700_5end | |||
|cluster_id=chr2:127413704..127413758,+ | |||
|coexpression_cluster_id=C14 | |||
|description=CAGE_peak_1_at_GYPC_5end | |||
|id=chr2:127413704..127413758,+ | |||
|ontology_enrichment_celltype=CL:0000048!2.19e-19!430;CL:0000034!5.75e-18!444;CL:0000723!2.88e-17!436;CL:0002320!2.86e-15!365;CL:0000134!2.45e-13!358;CL:0000219!2.28e-11!390;CL:0000988!1.55e-09!182;CL:0000791!1.20e-08!18;CL:0000789!1.20e-08!18;CL:0002420!1.20e-08!18;CL:0002419!1.20e-08!18;CL:0000790!1.20e-08!18;CL:0002371!1.53e-08!591;CL:0000037!3.39e-08!172;CL:0000566!3.39e-08!172;CL:0002032!4.65e-08!165;CL:0000837!4.65e-08!165;CL:0000084!6.35e-08!25;CL:0000827!6.35e-08!25;CL:0000542!7.81e-08!53;CL:0000051!7.81e-08!53;CL:0000838!8.70e-08!52;CL:0000144!2.05e-07!625;CL:0000183!5.02e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.17e-08;18!CL:0000789;1.17e-08;18!CL:0002419;1.17e-08;18!CL:0000084;6.39e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,1.20e-20,427;CL:0000034,4.13e-19,441;CL:0000723,2.17e-18,433;CL:0002320,3.70e-16,361;CL:0000134,3.66e-14,354;CL:0000219,4.65e-12,386;CL:0000988,2.91e-10,177;CL:0000037,3.77e-09,168;CL:0002032,5.21e-09,161;CL:0000837,5.21e-09,161;CL:0000791,1.15e-08,18;CL:0000789,1.15e-08,18;CL:0002420,1.15e-08,18;CL:0002419,1.15e-08,18;CL:0000790,1.15e-08,18;CL:0000084,6.08e-08,25;CL:0000827,6.08e-08,25;CL:0000542,6.51e-08,53;CL:0000051,6.51e-08,53;CL:0000838,7.24e-08,52;CL:0002087,9.56e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000790;1.17e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!7.26e-14!375;UBERON:0003081!1.00e-10!216;UBERON:0001009!5.55e-10!113;UBERON:0004535!1.95e-09!110;UBERON:0000178!3.11e-07!15;UBERON:0000179!3.11e-07!15;UBERON:0000463!3.11e-07!15;UBERON:0004290!5.00e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0002193;7.77e-08;42!UBERON:0000178;3.05e-07;15!UBERON:0000179;3.05e-07;15!UBERON:0000463;3.05e-07;15!UBERON:0002390;3.95e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,9.45e-15,371;UBERON:0003081,1.48e-10,203;UBERON:0000926,4.61e-10,315;UBERON:0004120,4.61e-10,315;UBERON:0006603,4.61e-10,315;UBERON:0001009,9.01e-10,112;UBERON:0004535,3.16e-09,109;UBERON:0007503,5.38e-09,78;UBERON:0002329,2.88e-07,71;UBERON:0003059,2.88e-07,71;UBERON:0007282,2.88e-07,71;UBERON:0004290,2.88e-07,71;UBERON:0009618,2.88e-07,71;UBERON:0000178,2.99e-07,15;UBERON:0000179,2.99e-07,15;UBERON:0000463,2.99e-07,15;UBERON:0007524,3.96e-07,73;UBERON:0003077,5.57e-07,72;UBERON:0007285,5.57e-07,72 | |||
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| ||
|short_description=p1@GYPC | |||
}} | }} |
Latest revision as of 19:37, 16 September 2015
Short description: | p1@GYPC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GYPC_5end |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | 0bp_to_ENST00000459787, ENST00000484700_5end |
EntrezGene: | GYPC |
HGNC: | 4704 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 1.20e-20 | 427 |
stem cell | 4.13e-19 | 441 |
somatic stem cell | 2.17e-18 | 433 |
connective tissue cell | 3.70e-16 | 361 |
mesenchymal cell | 3.66e-14 | 354 |
motile cell | 4.65e-12 | 386 |
hematopoietic cell | 2.91e-10 | 177 |
hematopoietic stem cell | 3.77e-09 | 168 |
hematopoietic oligopotent progenitor cell | 5.21e-09 | 161 |
hematopoietic multipotent progenitor cell | 5.21e-09 | 161 |
mature alpha-beta T cell | 1.15e-08 | 18 |
alpha-beta T cell | 1.15e-08 | 18 |
immature T cell | 1.15e-08 | 18 |
mature T cell | 1.15e-08 | 18 |
immature alpha-beta T cell | 1.15e-08 | 18 |
T cell | 6.08e-08 | 25 |
pro-T cell | 6.08e-08 | 25 |
lymphocyte | 6.51e-08 | 53 |
common lymphoid progenitor | 6.51e-08 | 53 |
lymphoid lineage restricted progenitor cell | 7.24e-08 | 52 |
nongranular leukocyte | 9.56e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 9.45e-15 | 371 |
lateral plate mesoderm | 1.48e-10 | 203 |
mesoderm | 4.61e-10 | 315 |
mesoderm-derived structure | 4.61e-10 | 315 |
presumptive mesoderm | 4.61e-10 | 315 |
circulatory system | 9.01e-10 | 112 |
cardiovascular system | 3.16e-09 | 109 |
epithelial vesicle | 5.38e-09 | 78 |
somite | 2.88e-07 | 71 |
presomitic mesoderm | 2.88e-07 | 71 |
presumptive segmental plate | 2.88e-07 | 71 |
dermomyotome | 2.88e-07 | 71 |
trunk paraxial mesoderm | 2.88e-07 | 71 |
blood | 2.99e-07 | 15 |
haemolymphatic fluid | 2.99e-07 | 15 |
organism substance | 2.99e-07 | 15 |
dense mesenchyme tissue | 3.96e-07 | 73 |
paraxial mesoderm | 5.57e-07 | 72 |
presumptive paraxial mesoderm | 5.57e-07 | 72 |