FFCP PHASE1:Hg19::chr1:147232669..147232676,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2702 | |EntrezGene=2702 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4279 | |HGNC=4279 | ||
|TSSclassifier=strong | |||
|UniProt=P36382 | |UniProt=P36382 | ||
|association_with_transcript=8bp_to_ENST00000369237_5end | |association_with_transcript=8bp_to_ENST00000369237_5end | ||
|cluster_id=chr1:147232669..147232676,- | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_4_at_GJA5_5end | |description=CAGE_peak_4_at_GJA5_5end | ||
|id=chr1:147232669..147232676,- | |id=chr1:147232669..147232676,- | ||
|ontology_enrichment_celltype=CL:0002541!4.23e-19!3;CL:0000349!5.04e-18!3;CL:0002577!5.04e-18!3;CL:0000197!4.16e-15!6;CL:0000098!4.16e-15!6;CL:0002167!4.16e-15!6;CL:0002536!4.17e-13!2;CL:0002537!2.42e-11!5;CL:0000039!3.07e-08!7;CL:0000586!3.07e-08!7;CL:0002077!1.99e-07!33;CL:0000710!9.29e-07!20 | |ontology_enrichment_celltype=CL:0002541!4.23e-19!3;CL:0000349!5.04e-18!3;CL:0002577!5.04e-18!3;CL:0000197!4.16e-15!6;CL:0000098!4.16e-15!6;CL:0002167!4.16e-15!6;CL:0002536!4.17e-13!2;CL:0002537!2.42e-11!5;CL:0000039!3.07e-08!7;CL:0000586!3.07e-08!7;CL:0002077!1.99e-07!33;CL:0000710!9.29e-07!20 | ||
|ontology_enrichment_celltype_v019=CL:0000349;5.52e-52;19!CL:0002541;1.04e-38;3!CL:0002536;5.96e-26;2!CL:0002537;7.09e-23;5!CL:0000039;1.72e-16;7!CL:0000586;1.72e-16;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,6.60e-52,19;CL:0002541,1.11e-38,3;CL:0002536,5.96e-26,2;CL:0002537,7.94e-23,5;CL:0000039,1.59e-16,7;CL:0000586,1.59e-16,7 | |||
|ontology_enrichment_development_v019=UBERON:0003124;8.05e-14;1!UBERON:0010227;1.04e-13;1!UBERON:0004140;1.61e-13;1!UBERON:0004872;5.56e-08;7 | |||
|ontology_enrichment_disease=DOID:1799!1.75e-07!1;DOID:10165!1.75e-07!1;DOID:1798!1.75e-07!1 | |ontology_enrichment_disease=DOID:1799!1.75e-07!1;DOID:10165!1.75e-07!1;DOID:1798!1.75e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:1799;4.25e-14;1!DOID:10165;4.25e-14;1!DOID:1798;4.25e-14;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,4.53e-14,1;DOID:10165,4.53e-14,1;DOID:1798,4.53e-14,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!5.16e-59!14;UBERON:0000158!5.16e-59!14;UBERON:0003124!5.66e-41!7;UBERON:0000478!1.96e-33!24;UBERON:0001987!1.14e-23!4;UBERON:0004340!1.14e-23!4;UBERON:0000305!2.69e-21!7;UBERON:0000476!4.23e-19!3;UBERON:0000920!4.23e-19!3;UBERON:0004871!1.30e-18!8;UBERON:0004923!6.48e-15!57;UBERON:0002079!2.67e-07!1;UBERON:0002135!7.73e-07!1 | |ontology_enrichment_uberon=UBERON:0005631!5.16e-59!14;UBERON:0000158!5.16e-59!14;UBERON:0003124!5.66e-41!7;UBERON:0000478!1.96e-33!24;UBERON:0001987!1.14e-23!4;UBERON:0004340!1.14e-23!4;UBERON:0000305!2.69e-21!7;UBERON:0000476!4.23e-19!3;UBERON:0000920!4.23e-19!3;UBERON:0004871!1.30e-18!8;UBERON:0004923!6.48e-15!57;UBERON:0002079!2.67e-07!1;UBERON:0002135!7.73e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;6.91e-79;10!UBERON:0000158;6.91e-79;10!UBERON:0000478;1.37e-50;24!UBERON:0000305;3.78e-44;7!UBERON:0003124;1.04e-38;3!UBERON:0000920;1.04e-38;3!UBERON:0002079;1.04e-13;1!UBERON:0001987;2.75e-13;4!UBERON:0004923;2.54e-08;55!UBERON:0002081;1.70e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.93e-87,14;UBERON:0000158,2.93e-87,14;UBERON:0000478,1.56e-50,24;UBERON:0003124,1.35e-44,7;UBERON:0000305,4.32e-44,7;UBERON:0000920,1.11e-38,3;UBERON:0004871,1.33e-38,8;UBERON:0004923,1.06e-17,66;UBERON:0002079,1.10e-13,1;UBERON:0001987,2.84e-13,4;UBERON:0004340,2.84e-13,4;UBERON:0002081,1.75e-07,2;UBERON:0010227,1.75e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,5.24259293112413,4.22027165165526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.53735113621709,0.871901815541886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535286966391485,0.630809660135739,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0.909382714338778,1.66435439510497,0.907170879989041,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.753150406214233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,6.92359005739301,1.18785872333055,2.45728561679386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,1.84451123510448,9.60406795184562,1.84700532267414,11.803042910081,5.12946523050429,21.854425816764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.435296032902013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,1.88113722962834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1440859791201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.16673430684978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.70122561861986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,5.24259293112413,4.22027165165526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.53735113621709,0.871901815541886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535286966391485,0.630809660135739,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0.909382714338778,1.66435439510497,0.907170879989041,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.753150406214233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,6.92359005739301,1.18785872333055,2.45728561679386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,1.84451123510448,9.60406795184562,1.84700532267414,11.803042910081,5.12946523050429,21.854425816764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.435296032902013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,1.88113722962834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1440859791201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.16673430684978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.70122561861986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p4@GJA5 | |short_description=p4@GJA5 | ||
}} | }} |
Latest revision as of 19:37, 16 September 2015
Short description: | p4@GJA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GJA5_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | 8bp_to_ENST00000369237_5end |
EntrezGene: | GJA5 |
HGNC: | 4279 |
UniProt: | P36382 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 6.60e-52 | 19 |
chorionic membrane mesenchymal stem cell | 1.11e-38 | 3 |
amniotic epithelial cell | 5.96e-26 | 2 |
amnion mesenchymal stem cell | 7.94e-23 | 5 |
germ line cell | 1.59e-16 | 7 |
germ cell | 1.59e-16 | 7 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.93e-87 | 14 |
membranous layer | 2.93e-87 | 14 |
extraembryonic structure | 1.56e-50 | 24 |
chorion | 1.35e-44 | 7 |
amnion | 4.32e-44 | 7 |
egg chorion | 1.11e-38 | 3 |
somatic layer of lateral plate mesoderm | 1.33e-38 | 8 |
organ component layer | 1.06e-17 | 66 |
left cardiac atrium | 1.10e-13 | 1 |
placenta | 2.84e-13 | 4 |
allantois | 2.84e-13 | 4 |
cardiac atrium | 1.75e-07 | 2 |
future cardiac atrium | 1.75e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 4.53e-14 | 1 |
endocrine pancreas cancer | 4.53e-14 | 1 |
pancreatic endocrine carcinoma | 4.53e-14 | 1 |