FFCP PHASE1:Hg19::chr1:149822620..149822635,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:149822620..149822635,+
|short_description=p1@HIST2H2AA3,p1@HIST2H2AA4
|description=CAGE_peak_1_at_HIST2H2AA3_5end,CAGE_peak_1_at_HIST2H2AA4_5end
|associati...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=723790,8337 | |EntrezGene=723790,8337 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29668,4736 | |HGNC=29668,4736 | ||
|TSSclassifier=strong | |||
|UniProt=Q6FI13 | |UniProt=Q6FI13 | ||
|association_with_transcript=0bp_to_NM_001040874,NM_003516,uc001esx.2_5end | |||
|cluster_id=chr1:149822620..149822635,+ | |||
|coexpression_cluster_id=C600 | |||
|description=CAGE_peak_1_at_HIST2H2AA3_5end,CAGE_peak_1_at_HIST2H2AA4_5end | |||
|id=chr1:149822620..149822635,+ | |||
|ontology_enrichment_celltype=CL:0002032!1.42e-21!165;CL:0000837!1.42e-21!165;CL:0000037!2.06e-21!172;CL:0000566!2.06e-21!172;CL:0000988!5.43e-20!182;CL:0002057!1.09e-18!42;CL:0000860!1.36e-18!45;CL:0002031!2.89e-18!124;CL:0000738!6.40e-18!140;CL:0000763!2.29e-17!112;CL:0000049!2.29e-17!112;CL:0000557!2.63e-14!71;CL:0000839!4.35e-14!70;CL:0002087!4.93e-14!119;CL:0002009!3.83e-13!65;CL:0000766!5.92e-13!76;CL:0000003!1.66e-12!722;CL:0002194!3.81e-12!63;CL:0000576!3.81e-12!63;CL:0000040!3.81e-12!63;CL:0000559!3.81e-12!63;CL:0000012!7.07e-10!682;CL:0000063!3.32e-09!578;CL:0000548!7.77e-09!679;CL:0000004!7.77e-09!679;CL:0000255!7.77e-09!679;CL:0000219!9.94e-09!390;CL:0000134!2.09e-07!358;CL:0000144!4.05e-07!625;CL:0002320!8.00e-07!365;CL:0002371!8.47e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.16e-22;33!CL:0002057;6.16e-22;33!CL:0000473;1.63e-17;39!CL:0000234;1.63e-17;39!CL:0000576;7.06e-14;48!CL:0000766;1.41e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.24e-27,42;CL:0002057,4.24e-27,42;CL:0000473,2.35e-26,48;CL:0000234,2.35e-26,48;CL:0000738,1.02e-22,136;CL:0000037,1.94e-22,168;CL:0002031,1.04e-21,120;CL:0002032,1.18e-21,161;CL:0000837,1.18e-21,161;CL:0000557,2.33e-21,67;CL:0000839,4.91e-21,66;CL:0000763,1.47e-20,108;CL:0000049,1.47e-20,108;CL:0000766,2.33e-20,72;CL:0000988,2.59e-20,177;CL:0002009,3.11e-19,61;CL:0002194,1.01e-17,59;CL:0000576,1.01e-17,59;CL:0000040,1.01e-17,59;CL:0000559,1.01e-17,59;CL:0002087,4.89e-16,115;CL:0000134,9.63e-08,354;CL:0000034,1.29e-07,441;CL:0002320,5.13e-07,361;CL:0000048,6.24e-07,427;CL:0000723,7.64e-07,433;CL:0000219,8.09e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.55e-19;42!CL:0000049;3.88e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.27e-14!80;UBERON:0001474!5.50e-13!86;UBERON:0004765!1.51e-11!101;UBERON:0001434!1.51e-11!101;UBERON:0002390!9.12e-10!102;UBERON:0003061!9.12e-10!102;UBERON:0002193!3.44e-08!112;UBERON:0001737!1.22e-07!9;UBERON:0002405!2.35e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.65e-10;9!UBERON:0001557;1.65e-10;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.85e-20,76;UBERON:0001474,8.89e-18,82;UBERON:0004765,4.41e-17,90;UBERON:0002405,3.49e-16,93;UBERON:0001434,5.15e-14,100;UBERON:0002390,9.52e-14,98;UBERON:0003061,9.52e-14,98;UBERON:0002193,2.16e-12,108;UBERON:0001737,1.67e-10,9;UBERON:0002204,5.49e-07,167 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0.491467873003018,1.39560233594486,0.655324116390517,0.527533956456907,0.247532705920093,0.331397375727916,71.93879067034,85.5826229794047,90.5584512080343,41.4742878971931,0.738726348460727,0.816002764977012,0.940364164434263,0.85870796139317,0.410623275218653,0.502170558379211,0.840547463227464,0.246301768349837,0.393553906568396,29.8956850405167,6.90892916574983,35.6077083626975,2.75826367343678,1.50602959389125,0.739508020333575,1.62681121218633,0.568676929949686,102.760153767197,1.10799081706375,0,0.217010870715852,0,0,0,36.9311526500094,28.7185717203495,25.4713264247207,53.2262494514018,35.7716062578988,39.3327091036782,45.4553979868998,40.729552338127,37.8371567821736,45.161684176497,30.9832648120237,41.9822108442459,34.2601057967541,28.6551457560738,37.304098417884,50.8099261335698,42.0417025469683,42.1962503027367,32.9851300186716,31.9141852194611,26.425934533027,51.6572444758879,35.7452691555418,39.2378016867212,43.9685164199301,35.4608384525737,42.5690135622029,58.1183522528034,55.9782006701098,50.0010572156597,74.9956266407393,91.2072446850037,102.523077653596,58.298559565031,91.3075508476358,42.9137316481204,33.0614782739848,113.979256035079,86.9481371919658,24.6394742245852,18.5687127829125,15.1216573156804,18.7761297929263,9.6095036888643,27.5881171178152,25.7807500386096,23.8513438633841,0.569212969109448,0,0.764546456250458,56.8336712889811,35.3120394678368,357.93897120933,0.196709770113833,0.393010762749165,0,54.001238011189,16.2961133316795,20.3582556465935,44.8101475338196,156.97733375121,74.8299004986087,67.5678378480044,33.0380713793319,101.320233903009,93.6427302431123,151.776185949193,175.482261294014,166.636774297655,32.4747573324912,38.7934200730084,34.4967228556423,204.296744883712,28.3583165265422,19.2431369470273,45.0375051794715,7.32700452945422,11.0684187155591,11.4054245333805,7.52875595388864,6.52731716887534,3.74792179657038,7.34009481336452,5.74789597844733,0,0,0.289648807765598,0,0,57.9217405151192,0.722878304769133,0,0,0,0.486634870302636,0.472674085820339,0,0,0,0.364295288292542,0.370784442784429,0,0,0.132957960518865,0.238490624305342,16.0158575018436,9.28643753323912,0.993812036833525,0.860234595106124,1.04142150482278,0,0.838998872419812,0.275118041940067,0,0,0.35576626268671,0,0.402829317109147,1.52054421143703,0,1.10298924103761,0,0.0892997282840798,0,0.225222960966644,1.53316637465883,0.949265659568129,0.549605231791222,21.0848667897701,42.6558290563158,0.436094052142534,0,0.506522046658319,13.7705548045748,0,0.354668382198357,0,1.06748995729705,0.24666754841716,0,0.134710672069688,0.326923806226917,0.151357427644931,0.576175924479999,2.34321431833797,0.312160076830321,1.1409436430889,0,0.587172493218824,0.971237666208789,0.702254033511242,0.204154171254893,0.61417158655884,0,1.18800285728205,0,0,0,1.0100166837244,0.125118519871964,0,0,0.30648779579902,0,0.453728732640084,0,0,0,0.300091096084402,0.103052529238439,0.257640540045629,0.18611685633159,38.1434510865262,0.0974370051611986,0,0,28.9346441705673,0,0.201504196455281,0.169560592310488,0,0,0,0.487894824518382,0.265059536642971,0.348581828608555,0.518305275076852,154.67268158676,150.735649298318,1.56449532329816,0,0,0,0.721879481669586,232.354555278253,198.424180221926,224.863290881289,210.11001805521,213.521855210558,216.39080462932,145.617812812978,111.257570726071,148.12765542436,0,0,0,0,0,0,0,1.7658523976586,0.491953754172454,34.6566976803022,0.329250856225877,1.1240175325762,0.402115889646523,0.185176890317059,0.325808305310325,2.07986957055916,1.44331342025273,36.8658687820744,20.8987475739763,0,120.376233269919,49.0855712765264,2.37061319387782,4.29243081047436,0.246217006087397,0,0.148631162288728,18.7467667973554,16.1262843070905,38.4210513526867,0.179117045405697,0.581267877027924,1.15014803749563,0,55.8227071643853,25.501358211515,23.2033125001308,22.597395583322,78.7373889222896,0.381988425558278,1.17217447210047,0,0,112.628646691469,18.0070652557264,0.336393253036082,0,0.1466765716419,0,3.57656445851882,147.082678944744,0.26593811658487,0,0.771622122786426,4.25547396069835,0.799266537048298,0,0,0,0.325736184293735,0,0,0,4.35766729300147,0.099972991182057,66.8930793526548,46.7099095031878,29.5167515276244,0,2.29723871668228,29.9537500585509,0.144781306667579,0,0,1.12085143993527,0.197030760201927,0,0.513372145118994,0,0,0,0.670065061337395,73.3629564401138,0,0,0,0.24538298343828,0,0,16.4296980609338,16.0586089917446,13.7201101079523,25.0682628084406,0,0,0,0,0.184369168541703,0.260650843404249,0.391602314925481,0,0,0,0,0.303127571446259,1.66435439510497,0,0,16.8808170616869,0,0.128139149255701,0,0,0,0.154209693802656,0.355123450626254,0.164254312027618,0,0.464841513839837,0.241718899183244,0,0.184161977871793,0.229628896329213,0,0.131124414959424,0,0.231046011313244,3.13739907670742,1.46139224653261,0,2.27466768141793,0.340187410553031,0.431831832204279,0,0.270946437543853,0.501689773854853,0.509752546090077,0.831076008928724,0.671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|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0.491467873003018,1.39560233594486,0.655324116390517,0.527533956456907,0.247532705920093,0.331397375727916,71.93879067034,85.5826229794047,90.5584512080343,41.4742878971931,0.738726348460727,0.816002764977012,0.940364164434263,0.85870796139317,0.410623275218653,0.502170558379211,0.840547463227464,0.246301768349837,0.393553906568396,29.8956850405167,6.90892916574983,35.6077083626975,2.75826367343678,1.50602959389125,0.739508020333575,1.62681121218633,0.568676929949686,102.760153767197,1.10799081706375,0,0.217010870715852,0,0,0,36.9311526500094,28.7185717203495,25.4713264247207,53.2262494514018,35.7716062578988,39.3327091036782,45.4553979868998,40.729552338127,37.8371567821736,45.161684176497,30.9832648120237,41.9822108442459,34.2601057967541,28.6551457560738,37.304098417884,50.8099261335698,42.0417025469683,42.1962503027367,32.9851300186716,31.9141852194611,26.425934533027,51.6572444758879,35.7452691555418,39.2378016867212,43.9685164199301,35.4608384525737,42.5690135622029,58.1183522528034,55.9782006701098,50.0010572156597,74.9956266407393,91.2072446850037,102.523077653596,58.298559565031,91.3075508476358,42.9137316481204,33.0614782739848,113.979256035079,86.9481371919658,24.6394742245852,18.5687127829125,15.1216573156804,18.7761297929263,9.6095036888643,27.5881171178152,25.7807500386096,23.8513438633841,0.569212969109448,0,0.764546456250458,56.8336712889811,35.3120394678368,357.93897120933,0.196709770113833,0.393010762749165,0,54.001238011189,16.2961133316795,20.3582556465935,44.8101475338196,156.97733375121,74.8299004986087,67.5678378480044,33.0380713793319,101.320233903009,93.6427302431123,151.776185949193,175.482261294014,166.636774297655,32.4747573324912,38.7934200730084,34.4967228556423,204.296744883712,28.3583165265422,19.2431369470273,45.0375051794715,7.32700452945422,11.0684187155591,11.4054245333805,7.52875595388864,6.52731716887534,3.74792179657038,7.34009481336452,5.74789597844733,0,0,0.289648807765598,0,0,57.9217405151192,0.722878304769133,0,0,0,0.486634870302636,0.472674085820339,0,0,0,0.364295288292542,0.370784442784429,0,0,0.132957960518865,0.238490624305342,16.0158575018436,9.28643753323912,0.993812036833525,0.860234595106124,1.04142150482278,0,0.838998872419812,0.275118041940067,0,0,0.35576626268671,0,0.402829317109147,1.52054421143703,0,1.10298924103761,0,0.0892997282840798,0,0.225222960966644,1.53316637465883,0.949265659568129,0.549605231791222,21.0848667897701,42.6558290563158,0.436094052142534,0,0.506522046658319,13.7705548045748,0,0.354668382198357,0,1.06748995729705,0.24666754841716,0,0.134710672069688,0.326923806226917,0.151357427644931,0.576175924479999,2.34321431833797,0.312160076830321,1.1409436430889,0,0.587172493218824,0.971237666208789,0.702254033511242,0.204154171254893,0.61417158655884,0,1.18800285728205,0,0,0,1.0100166837244,0.125118519871964,0,0,0.30648779579902,0,0.453728732640084,0,0,0,0.300091096084402,0.103052529238439,0.257640540045629,0.18611685633159,38.1434510865262,0.0974370051611986,0,0,28.9346441705673,0,0.201504196455281,0.169560592310488,0,0,0,0.487894824518382,0.265059536642971,0.348581828608555,0.518305275076852,154.67268158676,150.735649298318,1.56449532329816,0,0,0,0.721879481669586,232.354555278253,198.424180221926,224.863290881289,210.11001805521,213.521855210558,216.39080462932,145.617812812978,111.257570726071,148.12765542436,0,0,0,0,0,0,0,1.7658523976586,0.491953754172454,34.6566976803022,0.329250856225877,1.1240175325762,0.402115889646523,0.185176890317059,0.325808305310325,2.07986957055916,1.44331342025273,36.8658687820744,20.8987475739763,0,120.376233269919,49.0855712765264,2.37061319387782,4.29243081047436,0.246217006087397,0,0.148631162288728,18.7467667973554,16.1262843070905,38.4210513526867,0.179117045405697,0.581267877027924,1.15014803749563,0,55.8227071643853,25.501358211515,23.2033125001308,22.597395583322,78.7373889222896,0.381988425558278,1.17217447210047,0,0,112.628646691469,18.0070652557264,0.336393253036082,0,0.1466765716419,0,3.57656445851882,147.082678944744,0.26593811658487,0,0.771622122786426,4.25547396069835,0.799266537048298,0,0,0,0.325736184293735,0,0,0,4.35766729300147,0.099972991182057,66.8930793526548,46.7099095031878,29.5167515276244,0,2.29723871668228,29.9537500585509,0.144781306667579,0,0,1.12085143993527,0.197030760201927,0,0.513372145118994,0,0,0,0.670065061337395,73.3629564401138,0,0,0,0.24538298343828,0,0,16.4296980609338,16.0586089917446,13.7201101079523,25.0682628084406,0,0,0,0,0.184369168541703,0.260650843404249,0.391602314925481,0,0,0,0,0.303127571446259,1.66435439510497,0,0,16.8808170616869,0,0.128139149255701,0,0,0,0.154209693802656,0.355123450626254,0.164254312027618,0,0.464841513839837,0.241718899183244,0,0.184161977871793,0.229628896329213,0,0.131124414959424,0,0.231046011313244,3.13739907670742,1.46139224653261,0,2.27466768141793,0.340187410553031,0.431831832204279,0,0.270946437543853,0.501689773854853,0.509752546090077,0.831076008928724,0.671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| ||
|short_description=p1@HIST2H2AA3,p1@HIST2H2AA4 | |||
}} | }} |
Latest revision as of 20:38, 16 September 2015
Short description: | p1@HIST2H2AA3, p1@HIST2H2AA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HIST2H2AA3_5end, CAGE_peak_1_at_HIST2H2AA4_5end |
Coexpression cluster: | C600_Reticulocytes_CD34_HES3GFP_Hep2_Mesenchymal_iPS_CD4 |
Association with transcript: | 0bp_to_NM_001040874, NM_003516, uc001esx.2_5end |
EntrezGene: | 723790,8337 |
HGNC: | 4736&submit=Submit 29668, 4736 |
UniProt: | Q6FI13 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.24e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.24e-27 | 42 |
defensive cell | 2.35e-26 | 48 |
phagocyte | 2.35e-26 | 48 |
leukocyte | 1.02e-22 | 136 |
hematopoietic stem cell | 1.94e-22 | 168 |
hematopoietic lineage restricted progenitor cell | 1.04e-21 | 120 |
hematopoietic oligopotent progenitor cell | 1.18e-21 | 161 |
hematopoietic multipotent progenitor cell | 1.18e-21 | 161 |
granulocyte monocyte progenitor cell | 2.33e-21 | 67 |
myeloid lineage restricted progenitor cell | 4.91e-21 | 66 |
myeloid cell | 1.47e-20 | 108 |
common myeloid progenitor | 1.47e-20 | 108 |
myeloid leukocyte | 2.33e-20 | 72 |
hematopoietic cell | 2.59e-20 | 177 |
macrophage dendritic cell progenitor | 3.11e-19 | 61 |
monopoietic cell | 1.01e-17 | 59 |
monocyte | 1.01e-17 | 59 |
monoblast | 1.01e-17 | 59 |
promonocyte | 1.01e-17 | 59 |
nongranular leukocyte | 4.89e-16 | 115 |
mesenchymal cell | 9.63e-08 | 354 |
stem cell | 1.29e-07 | 441 |
connective tissue cell | 5.13e-07 | 361 |
multi fate stem cell | 6.24e-07 | 427 |
somatic stem cell | 7.64e-07 | 433 |
motile cell | 8.09e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.85e-20 | 76 |
bone element | 8.89e-18 | 82 |
skeletal element | 4.41e-17 | 90 |
immune system | 3.49e-16 | 93 |
skeletal system | 5.15e-14 | 100 |
hematopoietic system | 9.52e-14 | 98 |
blood island | 9.52e-14 | 98 |
hemolymphoid system | 2.16e-12 | 108 |
larynx | 1.67e-10 | 9 |
musculoskeletal system | 5.49e-07 | 167 |