FFCP PHASE1:Hg19::chr16:55690002..55690023,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6530 | |EntrezGene=6530 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11048 | |HGNC=11048 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc002eif.2,uc010ccd.2_5end | |association_with_transcript=0bp_to_uc002eif.2,uc010ccd.2_5end | ||
|cluster_id=chr16:55690002..55690023,+ | |||
|coexpression_cluster_id=C3572 | |||
|description=CAGE_peak_2_at_SLC6A2_5end | |description=CAGE_peak_2_at_SLC6A2_5end | ||
|id=chr16:55690002..55690023,+ | |id=chr16:55690002..55690023,+ | ||
|ontology_enrichment_celltype=CL:0002541!3.71e-12!3;CL:0002537!4.46e-07!5 | |ontology_enrichment_celltype=CL:0002541!3.71e-12!3;CL:0002537!4.46e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002541;1.59e-50;3!CL:0000349;7.72e-22;19!CL:0002577;9.37e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,1.59e-50,3;CL:0000349,8.07e-22,19;CL:0002577,8.62e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0003124;3.16e-18;1!UBERON:0007297;1.64e-09;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!7.51e-16!14;UBERON:0000158!7.51e-16!14;UBERON:0003124!1.66e-13!7;UBERON:0000476!3.71e-12!3;UBERON:0000920!3.71e-12!3;UBERON:0000478!1.26e-08!24;UBERON:0004089!5.90e-08!2;UBERON:0007023!8.36e-07!115 | |ontology_enrichment_uberon=UBERON:0005631!7.51e-16!14;UBERON:0000158!7.51e-16!14;UBERON:0003124!1.66e-13!7;UBERON:0000476!3.71e-12!3;UBERON:0000920!3.71e-12!3;UBERON:0000478!1.26e-08!24;UBERON:0004089!5.90e-08!2;UBERON:0007023!8.36e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0003124;1.59e-50;3!UBERON:0000920;1.59e-50;3!UBERON:0005631;7.02e-27;10!UBERON:0000158;7.02e-27;10!UBERON:0000478;1.04e-24;24!UBERON:0001301;1.12e-17;1!UBERON:0001987;1.39e-17;4!UBERON:0003127;1.64e-09;2!UBERON:0006947;9.37e-07;3!UBERON:0004054;9.37e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003124,2.72e-59,7;UBERON:0000920,1.59e-50,3;UBERON:0005631,2.58e-42,14;UBERON:0000158,2.58e-42,14;UBERON:0000478,1.09e-24,24;UBERON:0001301,1.03e-17,1;UBERON:0001987,1.22e-17,4;UBERON:0004340,1.22e-17,4;UBERON:0003127,1.71e-09,2;UBERON:0004923,7.06e-09,66;UBERON:0006947,9.12e-07,3;UBERON:0004054,9.12e-07,3 | |||
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| ||
|short_description=p2@SLC6A2 | |short_description=p2@SLC6A2 | ||
}} | }} |
Latest revision as of 00:36, 17 September 2015
Short description: | p2@SLC6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SLC6A2_5end |
Coexpression cluster: | C3572_neuroblastoma_placenta_chorionic_amniotic_epididymis_Urothelial_Placental |
Association with transcript: | 0bp_to_uc002eif.2, uc010ccd.2_5end |
EntrezGene: | SLC6A2 |
HGNC: | 11048 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 1.59e-50 | 3 |
extraembryonic cell | 8.07e-22 | 19 |
placental epithelial cell | 8.62e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
chorion | 2.72e-59 | 7 |
egg chorion | 1.59e-50 | 3 |
extraembryonic membrane | 2.58e-42 | 14 |
membranous layer | 2.58e-42 | 14 |
extraembryonic structure | 1.09e-24 | 24 |
epididymis | 1.03e-17 | 1 |
placenta | 1.22e-17 | 4 |
allantois | 1.22e-17 | 4 |
open tracheal system trachea | 1.71e-09 | 2 |
organ component layer | 7.06e-09 | 66 |
male genital duct | 9.12e-07 | 3 |
internal male genitalia | 9.12e-07 | 3 |