FFCP PHASE1:Hg19::chr15:32976758..32976767,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:32976758..32976767,+
|short_description=p9@SCG5
|description=CAGE_peak_9_at_SCG5_5end
|association_with_transcript=117bp_to_ENST00000475752_5end
|EntrezG...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6447 | |EntrezGene=6447 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10816 | |HGNC=10816 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=117bp_to_ENST00000475752_5end | |||
|cluster_id=chr15:32976758..32976767,+ | |||
|coexpression_cluster_id=C3477 | |||
|description=CAGE_peak_9_at_SCG5_5end | |||
|id=chr15:32976758..32976767,+ | |||
|ontology_enrichment_celltype=CL:0002539!2.57e-15!10;CL:0000055!6.19e-09!180;CL:0000057!1.64e-07!75;CL:0000359!3.50e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0002539;1.92e-36;10!CL:0000359;5.65e-14;32!CL:0000192;6.65e-08;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002539,1.73e-36,10;CL:0000359,5.29e-14,32;CL:0000192,3.88e-10,43;CL:0000514,3.88e-10,43;CL:0000187,1.10e-07,55;CL:0000680,3.14e-07,58;CL:0000056,3.14e-07,58;CL:0000355,3.14e-07,58;CL:0000393,8.06e-07,61;CL:0000211,8.06e-07,61 | |||
|ontology_enrichment_development_v019=CL:0000514;6.65e-08;43 | |||
|ontology_enrichment_disease=DOID:2394!3.15e-12!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;5.46e-13;14!DOID:4235;1.53e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.57e-13,14;DOID:4235,2.06e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0004237!2.57e-15!10;UBERON:0004695!2.57e-15!10;UBERON:0002111!2.57e-15!10;UBERON:0004178!2.57e-15!10;UBERON:0001135!1.94e-09!15;UBERON:0000947!3.05e-09!21;UBERON:0010191!3.05e-09!21;UBERON:0001637!1.18e-07!42;UBERON:0003509!1.18e-07!42;UBERON:0004572!1.18e-07!42;UBERON:0004573!6.84e-07!33;UBERON:0004571!6.84e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0004237;1.92e-36;10!UBERON:0004695;1.92e-36;10!UBERON:0002111;1.92e-36;10!UBERON:0004178;1.92e-36;10!UBERON:0001135;4.67e-24;15!UBERON:0000947;5.17e-22;21!UBERON:0010191;5.17e-22;21!UBERON:0004573;3.83e-13;33!UBERON:0004571;3.83e-13;33!UBERON:0002385;4.95e-11;31!UBERON:0001015;4.95e-11;31!UBERON:0000383;4.95e-11;31!UBERON:0001282;3.87e-09;1!UBERON:0009842;3.87e-09;1!UBERON:0003704;3.87e-09;1!UBERON:0001171;3.87e-09;1!UBERON:0001172;3.87e-09;1!UBERON:0001637;1.71e-07;42!UBERON:0003509;1.71e-07;42!UBERON:0004572;1.71e-07;42!UBERON:0002118;7.05e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004237,1.73e-36,10;UBERON:0004695,1.73e-36,10;UBERON:0002111,1.73e-36,10;UBERON:0004178,1.73e-36,10;UBERON:0001135,4.36e-24,15;UBERON:0000947,4.63e-22,21;UBERON:0010191,4.63e-22,21;UBERON:0004573,1.21e-13,33;UBERON:0004571,1.21e-13,33;UBERON:0001637,3.71e-13,42;UBERON:0003509,3.71e-13,42;UBERON:0004572,3.71e-13,42;UBERON:0001282,3.87e-09,1;UBERON:0009842,3.87e-09,1;UBERON:0003704,3.87e-09,1;UBERON:0001171,3.87e-09,1;UBERON:0001172,3.87e-09,1;UBERON:0004872,5.38e-09,83;UBERON:0007500,5.73e-09,59;UBERON:0001981,5.73e-09,59;UBERON:0004537,5.73e-09,59;UBERON:0006965,5.73e-09,59;UBERON:0003914,1.93e-08,117;UBERON:0000055,1.34e-07,68;UBERON:0002118,6.85e-07,5 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,7.39557661096953,7.23233433628772,5.11217063271161,8.29485757943862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,2.51577443545116,0,0,0.560677600142307,0,1.2333377420858,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680593098960126,0.358779271377724,0,0.423863802319124,0,0.412210116953756,0.257640540045629,0.18611685633159,0,0.292311015483596,0.252433774244115,0.276149695926898,0,0,0.403008392910561,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0.702012795417713,0.445893486866185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387815147273333,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,1.50719688529793,6.97226766880235,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0.992431231275107,0.153461973288062,0.561320188866147,0,0,0,0,0.308419387605311,0.532685175939381,0.0821271560138091,0.519254429183621,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0.103041011647722,0,0,1.14853107599234,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0,0,4.64845549297286,1.5740617341532,2.0911118104818,0.308033580176089,0,0.869932992075073,0.55597265731176,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405820753925408,0,0,0,0,1.07001315444375,0,0,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,0.222617410045812,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0.295547618953547,0.219385397153973,0,0,0,7.29229157420808,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0.548167698587004,0.794858446811959,0,0,3.28651163031288,0,0,0,0,0,0,0,0,0,0,0.203996435272644,0.866851769704557,0,0,0,0,0,0,0,0,0,0,0,0,0.720599767084807,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.864221491201268,0,0,0,4.25970054463554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.610131324509816,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0.149254802886874,1.16856654923612,0,0,0,0,0.228840068396924,0.151230923763239,0,1.62640664988597,0.63718706865481,2.24901556081802,0.465788870628778,0,1.86089200190596,1.5652351854352,0.751288044986092,0,2.44122439922797,0.909243296012797,0,2.32016879939247,0.796191777397232,0,0,0,0,0,0,0,3.62729480819636,0,0,0.358177682162975,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705351887381368,0,0.128458450192919,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0.762764190934334,0,0,0,8.26990781684432,0,0,0,0,0,0.781078098613847,0,0,0,0,0,0.351742488719241,0,0,0.336283722218824,0,0.227662191351298,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,1.0195626881269,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0.5290268405154,0,0.924351257262837,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0,1.00918676322552,0.0636471582781649,0,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0.363356758541113,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,7.39557661096953,7.23233433628772,5.11217063271161,8.29485757943862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,2.51577443545116,0,0,0.560677600142307,0,1.2333377420858,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680593098960126,0.358779271377724,0,0.423863802319124,0,0.412210116953756,0.257640540045629,0.18611685633159,0,0.292311015483596,0.252433774244115,0.276149695926898,0,0,0.403008392910561,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0.702012795417713,0.445893486866185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387815147273333,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,1.50719688529793,6.97226766880235,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0.992431231275107,0.153461973288062,0.561320188866147,0,0,0,0,0.308419387605311,0.532685175939381,0.0821271560138091,0.519254429183621,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0.103041011647722,0,0,1.14853107599234,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0,0,4.64845549297286,1.5740617341532,2.0911118104818,0.308033580176089,0,0.869932992075073,0.55597265731176,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405820753925408,0,0,0,0,1.07001315444375,0,0,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,0.222617410045812,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0.295547618953547,0.219385397153973,0,0,0,7.29229157420808,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0.548167698587004,0.794858446811959,0,0,3.28651163031288,0,0,0,0,0,0,0,0,0,0,0.203996435272644,0.866851769704557,0,0,0,0,0,0,0,0,0,0,0,0,0.720599767084807,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.864221491201268,0,0,0,4.25970054463554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.610131324509816,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0.149254802886874,1.16856654923612,0,0,0,0,0.228840068396924,0.151230923763239,0,1.62640664988597,0.63718706865481,2.24901556081802,0.465788870628778,0,1.86089200190596,1.5652351854352,0.751288044986092,0,2.44122439922797,0.909243296012797,0,2.32016879939247,0.796191777397232,0,0,0,0,0,0,0,3.62729480819636,0,0,0.358177682162975,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705351887381368,0,0.128458450192919,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0.762764190934334,0,0,0,8.26990781684432,0,0,0,0,0,0.781078098613847,0,0,0,0,0,0.351742488719241,0,0,0.336283722218824,0,0.227662191351298,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,1.0195626881269,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0.5290268405154,0,0.924351257262837,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0,1.00918676322552,0.0636471582781649,0,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p9@SCG5 | |||
}} | }} |
Latest revision as of 04:22, 17 September 2015
Short description: | p9@SCG5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SCG5_5end |
Coexpression cluster: | C3477_Smooth_Aortic_Mesothelial_cholangiocellular_glioma_pagetoid_mesothelioma |
Association with transcript: | 117bp_to_ENST00000475752_5end |
EntrezGene: | SCG5 |
HGNC: | 10816 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
aortic smooth muscle cell | 1.73e-36 | 10 |
vascular associated smooth muscle cell | 5.29e-14 | 32 |
smooth muscle cell | 3.88e-10 | 43 |
smooth muscle myoblast | 3.88e-10 | 43 |
muscle cell | 1.10e-07 | 55 |
muscle precursor cell | 3.14e-07 | 58 |
myoblast | 3.14e-07 | 58 |
multi-potent skeletal muscle stem cell | 3.14e-07 | 58 |
electrically responsive cell | 8.06e-07 | 61 |
electrically active cell | 8.06e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
blood vessel smooth muscle | 1.73e-36 | 10 |
arterial system smooth muscle | 1.73e-36 | 10 |
artery smooth muscle tissue | 1.73e-36 | 10 |
aorta smooth muscle tissue | 1.73e-36 | 10 |
smooth muscle tissue | 4.36e-24 | 15 |
aorta | 4.63e-22 | 21 |
aortic system | 4.63e-22 | 21 |
systemic artery | 1.21e-13 | 33 |
systemic arterial system | 1.21e-13 | 33 |
artery | 3.71e-13 | 42 |
arterial blood vessel | 3.71e-13 | 42 |
arterial system | 3.71e-13 | 42 |
intralobular bile duct | 3.87e-09 | 1 |
acinus | 3.87e-09 | 1 |
intrahepatic bile duct | 3.87e-09 | 1 |
portal lobule | 3.87e-09 | 1 |
hepatic acinus | 3.87e-09 | 1 |
splanchnic layer of lateral plate mesoderm | 5.38e-09 | 83 |
epithelial tube open at both ends | 5.73e-09 | 59 |
blood vessel | 5.73e-09 | 59 |
blood vasculature | 5.73e-09 | 59 |
vascular cord | 5.73e-09 | 59 |
epithelial tube | 1.93e-08 | 117 |
vessel | 1.34e-07 | 68 |
right ovary | 6.85e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.57e-13 | 14 |
spindle cell sarcoma | 2.06e-08 | 1 |