FFCP PHASE1:Hg19::chr10:135043690..135043701,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8433 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12634 | |||
|TSSclassifier=strong | |||
|UniProt=Q5T230 | |||
|association_with_transcript=-76bp_to_ENST00000304477,NM_003577,uc001lmc.2_5end | |||
|cluster_id=chr10:135043690..135043701,+ | |||
|coexpression_cluster_id=C157 | |||
|description=CAGE_peak_4_at_UTF1_5end | |||
|id=chr10:135043690..135043701,+ | |||
|ontology_enrichment_celltype=CL:0002322!6.43e-33!5;CL:0000039!2.14e-15!7;CL:0000586!2.14e-15!7;CL:0000540!5.73e-10!6;CL:0000031!5.73e-10!6;CL:0000404!5.73e-10!6;CL:0000047!1.37e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.85e-66;5!CL:0000039;4.18e-31;7!CL:0000586;4.18e-31;7!CL:0002321;2.85e-22;15!CL:0000148;1.13e-12;10!CL:0000147;3.25e-09;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.24e-66,5;CL:0000039,5.27e-31,7;CL:0000586,5.27e-31,7;CL:0000148,1.00e-12,10;CL:0000541,1.00e-12,10;CL:0000147,2.99e-09,14 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.78e-47;10!UBERON:0005564;1.78e-47;10 | |||
|ontology_enrichment_disease=DOID:3095!4.50e-10!22;DOID:2994!4.50e-10!22;DOID:3371!1.69e-07!1;DOID:4549!1.69e-07!1;DOID:5861!1.69e-07!1;DOID:6496!1.69e-07!1;DOID:0050619!2.31e-07!1;DOID:1357!2.31e-07!1;DOID:225!2.98e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:3095;3.16e-15;22!DOID:2994;3.16e-15;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.67e-15,22;DOID:2994,3.67e-15,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!4.79e-29!8;UBERON:0003135!5.44e-21!11;UBERON:0000991!1.87e-18!21;UBERON:0009196!1.87e-18!21;UBERON:0009117!1.87e-18!21;UBERON:0005564!1.87e-18!21;UBERON:0004176!1.45e-17!22;UBERON:0003101!3.24e-10!22;UBERON:0000079!3.24e-10!22;UBERON:0002323!8.72e-08!46;UBERON:0003133!2.06e-07!48;UBERON:0001764!2.31e-07!1;UBERON:0001825!2.31e-07!1;UBERON:0004458!3.08e-07!49 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.39e-59;8!UBERON:0003135;3.71e-43;11!UBERON:0000991;1.51e-22;21!UBERON:0003101;1.63e-21;22!UBERON:0000079;1.63e-21;22!UBERON:0000922;2.01e-13;49!UBERON:0002323;1.15e-08;45!UBERON:0003133;6.73e-08;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.64e-59,8;UBERON:0003135,4.00e-43,11;UBERON:0000991,1.57e-22,21;UBERON:0009196,1.57e-22,21;UBERON:0009117,1.57e-22,21;UBERON:0005564,1.57e-22,21;UBERON:0004176,1.69e-21,22;UBERON:0003101,1.69e-21,22;UBERON:0000079,1.69e-21,22;UBERON:0002323,3.83e-10,46;UBERON:0003133,1.04e-09,48;UBERON:0004458,1.67e-09,49;UBERON:0003886,1.36e-08,54;UBERON:0005156,7.81e-08,59;UBERON:0000990,7.81e-08,59;UBERON:0002553,1.45e-07,61 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.87987019649723,5.03613119621644,6.73924868643207,6.84162963101445,6.81266297364197,1.82488679537915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353024506766001,0,0,0,0,0,0,0,0,0,1.4889757501569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643012593860077,0.825236619583403,0.83088067605837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601682626794058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68623139945635,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.83244063544298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,1.20192129160065,0,6.22131861426089,12.5592180474813,6.06506336929976,23.5665086934833,1.89446745545599,1.60778478093707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@UTF1 | |||
}} |
Latest revision as of 04:44, 17 September 2015
Short description: | p4@UTF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_UTF1_5end |
Coexpression cluster: | C157_testicular_H9_testis_iPS_teratocarcinoma_colon_trachea |
Association with transcript: | -76bp_to_ENST00000304477, NM_003577, uc001lmc.2_5end |
EntrezGene: | UTF1 |
HGNC: | 12634 |
UniProt: | Q5T230 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.24e-66 | 5 |
germ line cell | 5.27e-31 | 7 |
germ cell | 5.27e-31 | 7 |
melanocyte | 1.00e-12 | 10 |
melanoblast | 1.00e-12 | 10 |
pigment cell | 2.99e-09 | 14 |
Ontology term | p-value | n |
---|---|---|
testis | 2.64e-59 | 8 |
male reproductive organ | 4.00e-43 | 11 |
gonad | 1.57e-22 | 21 |
indifferent external genitalia | 1.57e-22 | 21 |
indifferent gonad | 1.57e-22 | 21 |
gonad primordium | 1.57e-22 | 21 |
external genitalia | 1.69e-21 | 22 |
male organism | 1.69e-21 | 22 |
male reproductive system | 1.69e-21 | 22 |
body cavity | 3.83e-10 | 46 |
reproductive organ | 1.04e-09 | 48 |
body cavity or lining | 1.67e-09 | 49 |
body cavity precursor | 1.36e-08 | 54 |
reproductive structure | 7.81e-08 | 59 |
reproductive system | 7.81e-08 | 59 |
anatomical cavity | 1.45e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.67e-15 | 22 |
germ cell cancer | 3.67e-15 | 22 |