FFCP PHASE1:Hg19::chr19:31840313..31840380,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:31840313..31840380,-
|short_description=p1@TSHZ3
|description=CAGE_peak_1_at_TSHZ3_5end
|association_with_transcript=72bp_to_ENST00000240587_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57616 | |EntrezGene=57616 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30700 | |HGNC=30700 | ||
|TSSclassifier=strong | |||
|UniProt=Q63HK5 | |UniProt=Q63HK5 | ||
|association_with_transcript=72bp_to_ENST00000240587_5end | |||
|cluster_id=chr19:31840313..31840380,- | |||
|description=CAGE_peak_1_at_TSHZ3_5end | |||
|id=chr19:31840313..31840380,- | |||
|ontology_enrichment_celltype=CL:0000055!2.73e-23!180;CL:0000057!5.93e-15!75;CL:0000680!7.41e-11!57;CL:0000056!7.41e-11!57;CL:0000355!7.41e-11!57;CL:0000183!1.12e-10!59;CL:0000187!2.31e-10!54;CL:0000393!3.18e-09!60;CL:0000211!3.18e-09!60;CL:0000048!1.41e-08!430;CL:0000723!1.55e-08!436;CL:0000192!1.56e-08!42;CL:0000514!1.56e-08!42;CL:0000034!6.23e-08!444;CL:0002620!4.50e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.97e-07;23!CL:0000860;8.12e-07;33!CL:0002057;8.12e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.87e-15,76;CL:0000680,2.68e-11,58;CL:0000056,2.68e-11,58;CL:0000355,2.68e-11,58;CL:0000187,8.99e-11,55;CL:0000048,2.03e-10,427;CL:0000723,2.60e-10,433;CL:0000034,1.40e-09,441;CL:0000393,1.72e-09,61;CL:0000211,1.72e-09,61;CL:0000192,1.08e-08,43;CL:0000514,1.08e-08,43;CL:0002620,1.98e-07,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.09e-13!83;UBERON:0002329!2.09e-13!83;UBERON:0003077!2.09e-13!83;UBERON:0003059!2.09e-13!83;UBERON:0007282!2.09e-13!83;UBERON:0009618!2.09e-13!83;UBERON:0007285!2.09e-13!83;UBERON:0004290!3.63e-12!70;UBERON:0002204!1.15e-11!167;UBERON:0000486!5.92e-11!82;UBERON:0000479!1.47e-10!787;UBERON:0002385!2.00e-10!63;UBERON:0001015!2.00e-10!63;UBERON:0000383!2.00e-10!63;UBERON:0000468!2.09e-10!659;UBERON:0001134!4.69e-10!61;UBERON:0002036!4.69e-10!61;UBERON:0003082!4.69e-10!61;UBERON:0000467!1.32e-08!625;UBERON:0000480!2.23e-08!626;UBERON:0000922!4.26e-08!612;UBERON:0002050!7.69e-08!605;UBERON:0005423!7.69e-08!605;UBERON:0000923!1.48e-07!604;UBERON:0005291!1.48e-07!604;UBERON:0006598!1.48e-07!604;UBERON:0002532!1.48e-07!604;UBERON:0002199!8.30e-07!45;UBERON:0002416!8.30e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;5.56e-07;31!UBERON:0001015;5.56e-07;31!UBERON:0000383;5.56e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,6.82e-13,73;UBERON:0000926,6.89e-13,315;UBERON:0004120,6.89e-13,315;UBERON:0006603,6.89e-13,315;UBERON:0002204,8.57e-13,167;UBERON:0003077,9.13e-13,72;UBERON:0007285,9.13e-13,72;UBERON:0002329,1.34e-12,71;UBERON:0003059,1.34e-12,71;UBERON:0007282,1.34e-12,71;UBERON:0004290,1.34e-12,71;UBERON:0009618,1.34e-12,71;UBERON:0000479,1.73e-12,773;UBERON:0000486,1.55e-11,83;UBERON:0007503,2.30e-11,78;UBERON:0002385,9.30e-11,64;UBERON:0001015,9.30e-11,64;UBERON:0000383,9.30e-11,64;UBERON:0001134,2.29e-10,62;UBERON:0002036,2.29e-10,62;UBERON:0003082,2.29e-10,62;UBERON:0002050,1.79e-09,564;UBERON:0000923,2.21e-09,560;UBERON:0010316,2.21e-09,560;UBERON:0005291,2.21e-09,560;UBERON:0006598,2.21e-09,560;UBERON:0010317,2.21e-09,560;UBERON:0002532,2.21e-09,560;UBERON:0002199,2.13e-07,46;UBERON:0002416,2.13e-07,46;UBERON:0005423,4.29e-07,581 | |||
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| ||
|short_description=p1@TSHZ3 | |||
}} | }} |
Latest revision as of 05:11, 17 September 2015
Short description: | p1@TSHZ3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TSHZ3_5end |
Coexpression cluster: | NA |
Association with transcript: | 72bp_to_ENST00000240587_5end |
EntrezGene: | TSHZ3 |
HGNC: | 30700 |
UniProt: | Q63HK5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.87e-15 | 76 |
muscle precursor cell | 2.68e-11 | 58 |
myoblast | 2.68e-11 | 58 |
multi-potent skeletal muscle stem cell | 2.68e-11 | 58 |
muscle cell | 8.99e-11 | 55 |
multi fate stem cell | 2.03e-10 | 427 |
somatic stem cell | 2.60e-10 | 433 |
stem cell | 1.40e-09 | 441 |
electrically responsive cell | 1.72e-09 | 61 |
electrically active cell | 1.72e-09 | 61 |
smooth muscle cell | 1.08e-08 | 43 |
smooth muscle myoblast | 1.08e-08 | 43 |
skin fibroblast | 1.98e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 6.82e-13 | 73 |
mesoderm | 6.89e-13 | 315 |
mesoderm-derived structure | 6.89e-13 | 315 |
presumptive mesoderm | 6.89e-13 | 315 |
musculoskeletal system | 8.57e-13 | 167 |
paraxial mesoderm | 9.13e-13 | 72 |
presumptive paraxial mesoderm | 9.13e-13 | 72 |
somite | 1.34e-12 | 71 |
presomitic mesoderm | 1.34e-12 | 71 |
presumptive segmental plate | 1.34e-12 | 71 |
dermomyotome | 1.34e-12 | 71 |
trunk paraxial mesoderm | 1.34e-12 | 71 |
tissue | 1.73e-12 | 773 |
multilaminar epithelium | 1.55e-11 | 83 |
epithelial vesicle | 2.30e-11 | 78 |
muscle tissue | 9.30e-11 | 64 |
musculature | 9.30e-11 | 64 |
musculature of body | 9.30e-11 | 64 |
skeletal muscle tissue | 2.29e-10 | 62 |
striated muscle tissue | 2.29e-10 | 62 |
myotome | 2.29e-10 | 62 |
embryonic structure | 1.79e-09 | 564 |
germ layer | 2.21e-09 | 560 |
germ layer / neural crest | 2.21e-09 | 560 |
embryonic tissue | 2.21e-09 | 560 |
presumptive structure | 2.21e-09 | 560 |
germ layer / neural crest derived structure | 2.21e-09 | 560 |
epiblast (generic) | 2.21e-09 | 560 |
integument | 2.13e-07 | 46 |
integumental system | 2.13e-07 | 46 |
developing anatomical structure | 4.29e-07 | 581 |