FFCP PHASE1:Hg19::chr7:150945663..150945692,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:150945663..150945692,- to FFCP PHASE1:Hg19::chr7:150945663..150945692,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6604 | |EntrezGene=6604 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11108 | |HGNC=11108 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=39bp_to_ENST00000485610_5end | |||
|cluster_id=chr7:150945663..150945692,- | |||
|description=CAGE_peak_5_at_SMARCD3_5end | |||
|id=chr7:150945663..150945692,- | |||
|ontology_enrichment_celltype=CL:0000055!4.80e-12!180 | |||
|ontology_enrichment_celltype_v019=CL:0002603;1.00e-10;3!CL:0002575;4.68e-08;2!CL:0000047;6.96e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002603,9.46e-11,3;CL:0000047,3.56e-10,8;CL:0002575,4.79e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!1.04e-23!86;UBERON:0001017!1.09e-22!82;UBERON:0000073!2.00e-22!94;UBERON:0001016!2.00e-22!94;UBERON:0002346!1.99e-20!90;UBERON:0003075!4.75e-19!86;UBERON:0007284!4.75e-19!86;UBERON:0002616!1.53e-18!59;UBERON:0001049!7.73e-18!57;UBERON:0005068!7.73e-18!57;UBERON:0006241!7.73e-18!57;UBERON:0007135!7.73e-18!57;UBERON:0000955!1.29e-17!69;UBERON:0006238!1.29e-17!69;UBERON:0001893!9.52e-17!34;UBERON:0002791!2.33e-16!33;UBERON:0001869!1.04e-15!32;UBERON:0002020!1.90e-15!34;UBERON:0003528!1.90e-15!34;UBERON:0000475!1.35e-14!365;UBERON:0003056!9.46e-14!61;UBERON:0000956!2.04e-13!25;UBERON:0000203!2.04e-13!25;UBERON:0000924!2.25e-13!173;UBERON:0006601!2.25e-13!173;UBERON:0002780!6.13e-13!41;UBERON:0001890!6.13e-13!41;UBERON:0006240!6.13e-13!41;UBERON:0000033!1.43e-12!123;UBERON:0000153!1.50e-12!129;UBERON:0007811!1.50e-12!129;UBERON:0002619!2.11e-12!22;UBERON:0003080!2.48e-12!42;UBERON:0004121!2.57e-12!169;UBERON:0001950!4.39e-11!20;UBERON:0007023!7.51e-11!115;UBERON:0000481!3.60e-10!347;UBERON:0000119!5.35e-10!312;UBERON:0000468!3.19e-09!659;UBERON:0000483!4.54e-09!309;UBERON:0000025!4.48e-07!194;UBERON:0003076!6.57e-07!15;UBERON:0003057!6.57e-07!15;UBERON:0000477!7.32e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;7.09e-09;6!UBERON:0000922;1.30e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.42e-11,81;UBERON:0001016,6.15e-10,89;UBERON:0002037,6.85e-09,6;UBERON:0006215,6.85e-09,6;UBERON:0003075,1.05e-07,82;UBERON:0007284,1.05e-07,82;UBERON:0002346,3.63e-07,86;UBERON:0004121,4.38e-07,171;UBERON:0000924,4.38e-07,171;UBERON:0006601,4.38e-07,171;UBERON:0007625,9.15e-07,11 | |||
|phase1_expression=1.09007027562334,0.214100523890983,0.422863212287913,1.0007329835313,0.446961094427288,0,0,0,0.522371256399677,0,0,0,0,0,0.662794751455832,0,0.602694528023977,0,0.487932798790507,3.69363174230364,2.85600967741954,4.07491137921514,0.286235987131057,0.684372125364421,0.376627918784408,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0.223915474239924,0.647787332037959,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0.639337125799041,0.659702600373432,0.199463657621632,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.255725123687061,0.361439152384566,0,0.579386075843295,0,0,1.51255707462509,1.77383517970051,0.527008714158756,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0.402829317109147,0,0,0,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0.496971951695318,0,0.529636723252875,0.286836620748814,0,1.68203280042692,0,1.72667283892012,0,0,0.326923806226917,4.38936540170301,0.576175924479999,0,0.312160076830321,0.570471821544449,0.149448680551801,0,0,0,0,0.245668634623536,0,1.18800285728205,0,0,1.43723628363248,0.168336113954066,0,0,0,0,0.300476117813194,0.113432183160021,0.358779271377724,0.640672166455702,0.211931901159562,0.300091096084402,0,0.257640540045629,0.744467425326359,0.337552664482532,0.389748020644795,0.252433774244115,0.0920498986422993,0.484938170456436,0.710019185033229,0.10075209822764,0.339121184620975,0,0,0,0,0,0.232387885739037,0.518305275076852,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0.217879444092406,0,0.134831308160164,0,0,0,0,0,1.47008711385542,0,0,0,0,0,0.514703430895577,0,0,0,0.0925884451585296,0.325808305310325,0,0,1.507095264676,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253991577168676,0.381988425558278,0,0,0.102827492703324,0,0.285826432630578,1.79409734952577,3.05172048183296,0.5867062865676,0.129271715757778,3.57656445851882,0,0.531876233169741,0,0,0,0.532844358032199,0.142977993658148,1.08524321078289,0,0,0,0,0,0,0,0,0,0,0.239624855491583,1.14861935834114,0,0.144781306667579,0,0.895304816199478,0,0,0,0,1.77866236955724,1.30139853857622,6.95959931499926,9.71594338939223,5.10351001322531,0,0,0,0.24538298343828,0.500170521059677,0.271265023699736,0,0.178428988797162,0.473107245101804,0,0.300946099727719,0,0,0.664225598535437,0.737476674166813,0.173767228936166,6.46143819627044,7.54915532383883,0,0,0,0,0,0,0.744323423456331,0.920771839728375,0.561320188866147,1.66580894032411,0.511707249066704,1.60853921143608,0,0,0.532685175939381,0.0821271560138091,0,0.116210378459959,0.120859449591622,0,0,0.68888668898764,0.182091168006717,0.786746489756545,0,0,0,0,0.105551628892876,0,0,0,0,0,0.501689773854853,0,0,0.223874754722178,0,0,0,1.96808787419823,1.62689197332152,0.103041011647722,0,0.082509499920588,0,0,0,1.83674364755032,0,0.15350367472613,0,0.537101224341368,0.580066775656914,0.0852266274161009,1.95870478422822,0,0,0,0,0,0,0,2.46426864140871,1.06461206063404,0,0.18532421910392,0,3.34942532423701,0.316379424718726,0.190630193923825,0.767693373934002,0,0,0,0.179872457583315,0,0.117812402345686,0.404364963146632,0,0,0.48763373908959,0.243713489631284,0,0.409499734223957,0.141405431953713,0,0,0.66343897524122,0.438450885253763,0.578775534266688,0,0,0.30982349809975,0.281695602532241,0.430234056612155,0.294747123039363,0,0.354761064070598,0,0.329294892959902,0.379473173765715,0.349934720244983,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.640944426764839,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0.121360521749513,0,0.568272293612826,0,0.296964680832639,0,0.994147647766298,0.984685914873589,0,0,0.211125408127993,0.796991953004279,0,0,0,0,0,0,0,0,0.197286811273867,0,1.11136990144637,0,0.185536196323703,3.99227596002388,0,0,0,0,0,0,0,0,0.347249989866585,0.885741385813839,0.844175070377856,0,1.43753037910592,0.591095237907095,0.658156191461918,0,0,0.615602068030377,0,0,0,0.108647371922008,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.471807930864739,0.802577647298789,0,0,0,0.242780379534093,0,1.20990716048664,7.03967351750127,0.695052375913368,0.450970258243478,0.207376382794494,0,0,0,0,0,0.277349346026277,0,0,0.0870592065804026,0.17472666824203,0.171986032471617,0,0,0,0.193978032976839,3.70675732104301,0.677942222341597,0,0,0.316553979779393,0,0.0801588202515337,0.426905989478705,0,0,0,0,0,0.124252535565433,0,0.135904206073614,0.313808538937,0.305994652908965,0.866851769704557,0,0.684526894459965,0,0,0,0.279282401272254,0.916641696046735,0,0.199679000498991,0,0.223171457441873,1.61240333968143,0.720599767084807,0,0,0,0,0.196854963029498,0,0.795229689809303,1.63444087333891,0.160753148465019,0,0,0,0,0.485996453264197,0,0.315222829196793,1.15400093896996,0,0.179287339332845,0,0.714695326373367,0.662091970365432,0,0,0,0,0,0,0.170388021785422,0.226624183040251,0,1.32506888912221,0,0.39669780522807,0.342173675768659,0,0.4271496502707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| ||
|short_description=p5@SMARCD3 | |||
}} | }} |
Latest revision as of 06:09, 17 September 2015
Short description: | p5@SMARCD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SMARCD3_5end |
Coexpression cluster: | NA |
Association with transcript: | 39bp_to_ENST00000485610_5end |
EntrezGene: | SMARCD3 |
HGNC: | 11108 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebellum | 9.46e-11 | 3 |
neuronal stem cell | 3.56e-10 | 8 |
central nervous system pericyte | 4.79e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.42e-11 | 81 |
nervous system | 6.15e-10 | 89 |
cerebellum | 6.85e-09 | 6 |
rhombic lip | 6.85e-09 | 6 |
neural plate | 1.05e-07 | 82 |
presumptive neural plate | 1.05e-07 | 82 |
neurectoderm | 3.63e-07 | 86 |
ectoderm-derived structure | 4.38e-07 | 171 |
ectoderm | 4.38e-07 | 171 |
presumptive ectoderm | 4.38e-07 | 171 |
pigment epithelium of eye | 9.15e-07 | 11 |