FFCP PHASE1:Hg19::chr10:16859361..16859436,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6251 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10464 | |||
|TSSclassifier=strong | |||
|UniProt=Q15404,F2Z2H2 | |||
|association_with_transcript=0bp_to_ENST00000377921,ENST00000464074,uc001iok.2_5end | |||
|cluster_id=chr10:16859361..16859436,- | |||
|description=CAGE_peak_1_at_RSU1_5end | |||
|id=chr10:16859361..16859436,- | |||
|ontology_enrichment_celltype=CL:0000055!1.90e-31!180;CL:0002371!4.00e-28!591;CL:0000144!3.49e-25!625;CL:0000048!2.93e-20!430;CL:0000723!6.55e-20!436;CL:0000057!1.13e-19!75;CL:0000034!1.68e-18!444;CL:0000222!4.79e-15!119;CL:0000680!2.23e-14!57;CL:0000056!2.23e-14!57;CL:0000355!2.23e-14!57;CL:0000003!2.92e-14!722;CL:0000548!1.16e-13!679;CL:0000004!1.16e-13!679;CL:0000255!1.16e-13!679;CL:0000012!2.04e-13!682;CL:0000187!2.16e-13!54;CL:0000183!3.09e-13!59;CL:0000192!8.86e-13!42;CL:0000514!8.86e-13!42;CL:0000393!2.14e-11!60;CL:0000211!2.14e-11!60;CL:0000359!5.63e-11!32;CL:0002620!3.02e-10!23;CL:0000220!1.16e-09!246;CL:0002321!2.39e-09!248;CL:0002320!3.97e-08!365;CL:0000134!4.31e-08!358;CL:0000219!9.89e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.39e-10;32!CL:0002620;2.97e-10;23!CL:0000192;2.61e-09;43!CL:0000057;1.82e-08;73!CL:0000187;9.42e-08;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,2.30e-21,427;CL:0000723,5.31e-21,433;CL:0000057,4.94e-20,76;CL:0000034,1.52e-19,441;CL:0000222,2.27e-15,121;CL:0000680,1.70e-14,58;CL:0000056,1.70e-14,58;CL:0000355,1.70e-14,58;CL:0000187,1.64e-13,55;CL:0000192,7.02e-13,43;CL:0000514,7.02e-13,43;CL:0000393,1.59e-11,61;CL:0000211,1.59e-11,61;CL:0000359,5.63e-11,32;CL:0002620,3.02e-10,23;CL:0002321,1.31e-09,250;CL:0002320,1.06e-08,361;CL:0000134,1.14e-08,354;CL:0000219,3.11e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000514;2.61e-09;43!CL:0000355;8.74e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004535!3.00e-23!110;UBERON:0001009!1.48e-21!113;UBERON:0002049!2.40e-17!79;UBERON:0007798!2.40e-17!79;UBERON:0000914!3.36e-17!83;UBERON:0002329!3.36e-17!83;UBERON:0003077!3.36e-17!83;UBERON:0003059!3.36e-17!83;UBERON:0007282!3.36e-17!83;UBERON:0009618!3.36e-17!83;UBERON:0007285!3.36e-17!83;UBERON:0004290!2.70e-15!70;UBERON:0004872!2.86e-15!84;UBERON:0000486!1.30e-14!82;UBERON:0000055!2.14e-14!69;UBERON:0001981!2.48e-13!60;UBERON:0007500!2.48e-13!60;UBERON:0004537!2.48e-13!60;UBERON:0006965!2.48e-13!60;UBERON:0001637!7.52e-13!42;UBERON:0003509!7.52e-13!42;UBERON:0004572!7.52e-13!42;UBERON:0001134!9.58e-13!61;UBERON:0002036!9.58e-13!61;UBERON:0003082!9.58e-13!61;UBERON:0002385!1.54e-12!63;UBERON:0001015!1.54e-12!63;UBERON:0000383!1.54e-12!63;UBERON:0002199!1.83e-11!45;UBERON:0002416!1.83e-11!45;UBERON:0003102!1.24e-10!95;UBERON:0005256!1.57e-10!143;UBERON:0004573!4.09e-10!33;UBERON:0004571!4.09e-10!33;UBERON:0003914!1.43e-09!118;UBERON:0002097!3.63e-09!40;UBERON:0000490!7.42e-09!138;UBERON:0002384!1.09e-07!375;UBERON:0002100!2.08e-07!216;UBERON:0000947!6.55e-07!21;UBERON:0010191!6.55e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.60e-09;42!UBERON:0003509;1.60e-09;42!UBERON:0004572;1.60e-09;42!UBERON:0004573;3.57e-09;33!UBERON:0004571;3.57e-09;33!UBERON:0002199;2.41e-08;46!UBERON:0002416;2.41e-08;46!UBERON:0002097;7.45e-08;41!UBERON:0007500;7.68e-08;56!UBERON:0001981;7.68e-08;56!UBERON:0004537;7.68e-08;56!UBERON:0002049;7.89e-08;75!UBERON:0007798;7.89e-08;75!UBERON:0000055;2.34e-07;65!UBERON:0003102;3.70e-07;50!UBERON:0004535;5.94e-07;109!UBERON:0000947;6.36e-07;21!UBERON:0010191;6.36e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004535,6.92e-23,109;UBERON:0001009,3.34e-21,112;UBERON:0002049,5.34e-17,78;UBERON:0007798,5.34e-17,78;UBERON:0007503,1.01e-15,78;UBERON:0002329,2.01e-15,71;UBERON:0003059,2.01e-15,71;UBERON:0007282,2.01e-15,71;UBERON:0004290,2.01e-15,71;UBERON:0009618,2.01e-15,71;UBERON:0004872,6.12e-15,83;UBERON:0007524,7.14e-15,73;UBERON:0000486,9.52e-15,83;UBERON:0003077,1.29e-14,72;UBERON:0007285,1.29e-14,72;UBERON:0000055,4.63e-14,68;UBERON:0000926,8.82e-14,315;UBERON:0004120,8.82e-14,315;UBERON:0006603,8.82e-14,315;UBERON:0007500,5.37e-13,59;UBERON:0001981,5.37e-13,59;UBERON:0004537,5.37e-13,59;UBERON:0006965,5.37e-13,59;UBERON:0001134,7.16e-13,62;UBERON:0002036,7.16e-13,62;UBERON:0003082,7.16e-13,62;UBERON:0001637,7.52e-13,42;UBERON:0003509,7.52e-13,42;UBERON:0004572,7.52e-13,42;UBERON:0002385,1.14e-12,64;UBERON:0001015,1.14e-12,64;UBERON:0000383,1.14e-12,64;UBERON:0002199,5.53e-12,46;UBERON:0002416,5.53e-12,46;UBERON:0003102,1.03e-11,99;UBERON:0000490,5.84e-11,148;UBERON:0004573,4.09e-10,33;UBERON:0004571,4.09e-10,33;UBERON:0002097,1.16e-09,41;UBERON:0003914,1.92e-09,117;UBERON:0005256,6.93e-09,122;UBERON:0002384,3.05e-08,371;UBERON:0003104,1.75e-07,160;UBERON:0009142,1.75e-07,160;UBERON:0000947,6.55e-07,21;UBERON:0010191,6.55e-07,21 | |||
|phase1_expression=198.211111784177,206.607005554799,192.825624803289,179.131204052103,164.034721654815,117.76570075355,220.37089400643,235.631512788208,170.293029586295,98.5393085371051,48.8460817580699,70.5565631980456,68.051880382941,69.6804567165063,72.2446279086856,165.391986027137,166.946384262642,192.801863862267,177.607538759745,92.9563988479749,58.3441976958564,63.0043990170957,116.211810775209,76.5128036157423,96.1656619296189,57.4628811224594,66.665678633356,61.9453848938656,38.1563348543437,55.6552627240958,56.972333380316,62.520643264567,50.9038002735243,70.6230159418565,41.599886711622,46.7736774883617,35.5256531595165,41.5496556398908,43.7186895484909,42.3171197895911,69.1898815401366,71.2566065241755,74.4393390462799,33.4415949192999,29.8521995514159,25.2287423635329,34.1670684251356,34.1269347058115,20.1309141081817,50.9215534410206,47.9020521209418,31.925101034959,38.2667705617647,36.1471422806943,23.0225027210381,30.8717436849872,30.2925826564209,24.2701363200691,29.0779697752357,35.6231220054464,15.983428144976,44.20007422502,53.2567965849757,31.1144067888867,33.9544809195443,28.9366464592481,22.4216009638407,50.2497330513486,51.1053260051797,33.2298932398828,32.6915731422019,34.9863754188186,19.9371304087757,71.8267973460602,69.7342103885343,66.8811079171719,57.9615736715915,52.1113818160027,58.0219367976459,56.7175360045085,57.0890863561389,67.2204085853853,42.2390986707174,37.6835641770871,37.3593886622693,37.9789898084191,46.4459344961774,50.5782147159945,42.967916731016,35.2999889178085,44.398611590537,38.170417309111,33.2577708468949,43.6165384310785,49.8852621053567,61.368491752593,43.8662787353848,41.2661300886623,44.821126781893,94.4603698957331,57.3623189275119,42.610302516126,54.5514839542152,88.2370818530575,82.7842600004293,80.1952698392708,76.9082973092644,74.5491480803429,84.2784572188011,61.6642142263785,60.5206538951008,70.1323467478827,56.2006074384209,49.4950531965969,56.4491828546875,88.7212153321943,58.249515027492,67.0073518691128,65.5321002330512,47.1476813199663,52.0866763085135,55.1262185780057,56.1645194160092,58.745854519878,46.224368824368,52.3277727017277,37.7718878583681,63.304517372566,48.9415558283818,42.7231991454257,58.5136479153508,87.8618126211763,134.511415059394,169.514962468362,127.841167212152,101.537409791537,221.089493280206,79.8081187296323,98.1271402163024,123.503274386648,112.340690901508,41.7168355460215,80.5092587126518,59.3255108455087,144.423590176334,167.338677544596,147.051504333865,73.21662166174,61.7754503642538,61.6619452207078,97.7911044244189,114.411201149115,87.8265469067214,91.5798865916896,118.718340447403,119.401230201989,120.172105758666,125.590544956294,176.104300029922,174.724159863158,125.682746938054,140.650339557925,134.234131651493,126.843762719325,139.344415035663,90.0141261103524,77.6871629286548,77.8145330139757,75.1251523582828,73.0934557867459,68.7006539739027,26.3560834872127,19.3890132074163,88.5270925849345,172.946239189971,170.31803818886,182.062623618176,111.005772229791,112.075208774681,146.897531237284,199.620622014548,152.933880018639,139.422543859095,89.0437542380638,98.4040656743022,132.58910661696,82.3931572006398,95.8374656200228,135.165313267529,126.644744382868,134.204915135517,89.1327844706175,88.544500569368,97.6133106580627,139.028990624582,93.722584108879,132.360325686156,166.320400019487,119.182659912264,183.852595111481,77.6107593161537,113.963549146903,93.9640084238451,213.062304807337,184.370600769952,169.487751076858,115.833543416986,137.820102539426,182.618649131261,187.076272605065,226.555202339572,162.649374077746,178.177823053261,214.099288777918,209.939813942033,235.94931247329,288.413535277148,197.150777684653,169.371813501831,112.667301602712,226.141110433083,249.159938916954,177.529940149081,108.999121184099,132.009122365964,118.16349330027,46.2280346231167,43.8673533144116,38.5763890326801,39.7021840708869,45.4177531576131,33.9428943940522,219.029345261742,193.615522396058,157.473810341828,138.846010481562,205.735652275832,43.4185956146227,42.4833418996816,36.6336765422893,44.22788306569,45.1010449271281,41.759628963553,41.797705529651,45.5233799090803,42.7069344210493,127.700893650064,77.1329755918952,113.182853116135,105.84627219759,40.5616111429859,39.313088667105,47.8539824411937,46.795088537953,42.6769881744604,145.48950313315,118.96930938295,114.649788322772,75.3967293087231,71.5708681075434,87.9682424337877,80.0749784665275,118.351700460724,83.8176827969805,213.918640897667,120.545983880497,77.7815661128706,83.5215728309886,31.608175918371,30.0470156733205,93.8086793192984,155.846840582732,91.7054271321453,109.668585764529,146.816380045803,112.994752502182,69.9452062309245,66.5551719196973,73.2260917205553,259.633526371162,117.808804709696,58.2592004669569,65.7186987581344,42.7961849315428,135.82199589095,93.2051758362198,114.873098265846,78.6933251704444,142.210422408696,75.3861075188233,111.472308725926,193.313989411402,153.457944229315,143.816378494883,125.264292569287,71.531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| |||
|short_description=p1@RSU1 | |||
}} |
Latest revision as of 09:17, 17 September 2015
Short description: | p1@RSU1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RSU1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000377921, ENST00000464074, uc001iok.2_5end |
EntrezGene: | RSU1 |
HGNC: | 10464 |
UniProt: | Q15404F2Z2H2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 2.30e-21 | 427 |
somatic stem cell | 5.31e-21 | 433 |
fibroblast | 4.94e-20 | 76 |
stem cell | 1.52e-19 | 441 |
mesodermal cell | 2.27e-15 | 121 |
muscle precursor cell | 1.70e-14 | 58 |
myoblast | 1.70e-14 | 58 |
multi-potent skeletal muscle stem cell | 1.70e-14 | 58 |
muscle cell | 1.64e-13 | 55 |
smooth muscle cell | 7.02e-13 | 43 |
smooth muscle myoblast | 7.02e-13 | 43 |
electrically responsive cell | 1.59e-11 | 61 |
electrically active cell | 1.59e-11 | 61 |
vascular associated smooth muscle cell | 5.63e-11 | 32 |
skin fibroblast | 3.02e-10 | 23 |
embryonic cell | 1.31e-09 | 250 |
connective tissue cell | 1.06e-08 | 361 |
mesenchymal cell | 1.14e-08 | 354 |
motile cell | 3.11e-07 | 386 |