FFCP PHASE1:Hg19::chr9:36276966..36276992,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:36276966..36276992,- to FFCP PHASE1:Hg19::chr9:36276966..36276992,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10020 | |EntrezGene=10020 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23657 | |HGNC=23657 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000543356_5end | |||
|cluster_id=chr9:36276966..36276992,- | |||
|coexpression_cluster_id=C37 | |||
|description=CAGE_peak_2_at_GNE_5end | |||
|id=chr9:36276966..36276992,- | |||
|ontology_enrichment_celltype=CL:0000223!3.01e-09!59;CL:0000066!8.03e-08!254;CL:0002076!8.47e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0000083;5.28e-08;4!CL:0002541;9.22e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000223,1.52e-09,58;CL:0000083,4.05e-08,4;CL:0000066,6.12e-08,253;CL:0002541,8.85e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.17e-10;29!UBERON:0006595;1.88e-09;86 | |||
|ontology_enrichment_disease=DOID:305!1.24e-09!106;DOID:0050687!7.60e-09!143;DOID:299!4.63e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:299;2.97e-09;25!DOID:1793;5.28e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.48e-12,106;DOID:0050687,7.31e-11,143;DOID:299,2.13e-09,25;DOID:1793,4.05e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.56e-17!169;UBERON:0000925!1.56e-17!169;UBERON:0006595!1.56e-17!169;UBERON:0001007!2.14e-15!155;UBERON:0001555!2.14e-15!155;UBERON:0007026!2.14e-15!155;UBERON:0004921!2.39e-15!129;UBERON:0004185!2.39e-15!129;UBERON:0000077!3.04e-11!130;UBERON:0000160!8.08e-10!27;UBERON:0001737!4.33e-09!9;UBERON:0005409!8.89e-09!35;UBERON:0003104!1.99e-08!238;UBERON:0009142!1.99e-08!238;UBERON:0001041!2.77e-08!98;UBERON:0000466!8.81e-08!126;UBERON:0000464!6.65e-07!104;UBERON:0002553!8.44e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.20e-15;9!UBERON:0001557;2.20e-15;9!UBERON:0004921;3.25e-12;33!UBERON:0005409;9.31e-10;22!UBERON:0000160;1.52e-09;17!UBERON:0001007;4.88e-07;81!UBERON:0000072;8.02e-07;37!UBERON:0003124;9.22e-07;3!UBERON:0000920;9.22e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,1.00e-19,118;UBERON:0001007,4.56e-18,145;UBERON:0001555,4.56e-18,145;UBERON:0007026,4.56e-18,145;UBERON:0004119,8.51e-18,160;UBERON:0000925,8.51e-18,160;UBERON:0006595,8.51e-18,160;UBERON:0001737,2.10e-15,9;UBERON:0001041,2.15e-13,87;UBERON:0001557,1.72e-11,19;UBERON:0000160,2.37e-09,17;UBERON:0001004,1.68e-08,74;UBERON:0008947,2.75e-08,38;UBERON:0003258,2.75e-08,38;UBERON:0005409,3.80e-08,25;UBERON:0000072,4.42e-08,47;UBERON:0005177,1.63e-07,101;UBERON:0000065,2.99e-07,54;UBERON:0000920,8.85e-07,3 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0,1.0007329835313,0,1.74467704820074,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,1.37528029272598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0.267899184852239,0,0.112611480483322,0,0,0,0,0,0.436094052142534,0,0.12663051166458,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,1.43723628363248,0.168336113954066,0,0,0.438977620880838,0,0,0,0.358779271377724,0,0,0.600182192168805,0.309157587715317,1.28820270022815,0.18611685633159,0.168776332241266,0.194874010322397,0.252433774244115,0.0920498986422993,0.161646056818812,0,0.10075209822764,0,1.54608682530637,1.36373060295417,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,6.62518080223126,5.90046415273356,7.47134192638794,5.5146986366197,5.88274499049497,6.8808479542218,7.9550471814497,9.8110732562673,5.77120735419586,0,0,0,0,26.6185573125845,4.91413608338813,10.6342183202653,0,2.09080345523293,0,1.09750285408626,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87467667973554,0,0.141775097242386,0,0,0.766765358330422,0,0,0,0.144119953416961,0.25248486685276,0,0,0,0,0,0,0,0,0.43596006883328,0,0.258543431515556,0,0,0.26593811658487,0,0,0,0,0,0,0,0.65147236858747,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0.508189248444927,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0.117141414992713,0,0,0,0,0,0.260650843404249,0,0.343143423810856,0,0,0,0,0,0,0.248107807818777,0.61384789315225,0.280660094433074,0.256278298511402,0,0.321707842287215,0,0,0,0.246381468041427,0,0.232420756919918,2.1754700926492,0,0.184161977871793,0,0,0.393373244878272,6.31679458070376,8.47168708148562,0,0,1.05551628892876,0,0,0.215915916102139,0,0,0,14.7828238366122,10.8039881160734,1.11937377361089,0,0,0,0,0,31.2214265292598,1.19040304263846,1.23764249880882,0,0,0,0.48335359146061,0,0.614014698904518,0.551346289938122,0,0.145016693914229,0.596586391912706,0.979352392114111,0.330569830721956,0.384380134730212,0.127612712494584,0.30347334256665,0,0,0,0,0.532306030317022,0,0,0,0.372158369359667,0.316379424718726,0.38126038784765,0,0,0,0,0.179872457583315,0.823611089208164,0.589062011728432,0,0,0,0,0.243713489631284,0,0.136499911407986,0,0,0,0.66343897524122,0,0,0,0,0,0.563391205064483,0.286822704408103,0,0,0,0,0,0,0,0,0.670302275535787,0,31.3498856586675,0.43050537267123,3.36942951335251,1.33029046061003,0.918893600827838,0,0,0,0,0,0,0,0,0.106824071127473,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.34242278632766,0.890894042497916,0.614321404198464,0,0,0,0,0,5.97743964753209,3.31540698637377,0,0.102268682502155,0,0.311039587661807,1.79736702294654,0.895105873378046,0,1.479651084554,0,0,0,0,0,0,0,2.17499872630438,0,0,9.45550727071745,0,0,0,0,0,0,0,0,0,0,0,1.69290568708354,0,34.584585658209,32.4025096319277,32.8115063204464,18.1830661047194,6.77822191173781,35.1802952172299,0,0,0,0,0,0,0.189753732724185,0,0,21.0570322525301,7.77441892886674,0,13.9336670350991,3.18447232212021,20.7750249277433,0,0,0,0,0,0.234264445725339,0,1.76098157038881,7.76897214509097,0,0,0,0,0.150323419414493,0,0,0,0,0,7.9690672888342,0.277349346026277,7.46306874841063,3.82170349916073,0,0,0,1.16107597546902,0.219267951258557,0.903270027585302,2.23074737923365,0,11.2990370390266,0,0,0.0633107959558787,15.4485592360494,2.80555870880368,0.85381197895741,1.59847687665704,2.4495370916198,0,0,0.432164393964449,0,0,0.271808412147228,0.313808538937,1.73396969981747,0,0,0,0,0.859530882839914,0,0,0,0,31.3496030783416,0,0,0.0671834724867263,0,0,0,0,0,1.77169466726548,0,0,0,0,0,0,0,0,0,0.335434687599266,6.69848512043184,4.77336752028483,0,0,2.49489756515279,0,0,0,0,0.864221491201268,0,1.19730191562487,0,0.170388021785422,9.06496732161006,6.59485051551371,0,0,0,0,12.6866704017001,0.747511887973863,0.157204305099666,1.24271716604159,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0,0,0.285465333544967,5.41111385305795,0,0,0.74627401443437,0.701139929541673,1.10961172300523,0.378806010550178,0,0,0,0.151230923763239,1.39893480524502,0,1.11507737014592,0.899606224327209,0.465788870628778,0,0,0,0.150257608997218,0,1.62748293281865,0.545545977607678,1.93339002676479,0.464033759878494,0.398095888698616,0.800055529326307,0,0,0,0,0.214441591374926,0,6.5744718398559,0,0,0,0,0,0.353378291891762,0,0,1.28120759293973,0.690860683462397,0,0,0,0,0,1.31043939538565,1.2288645437686,0.211312123358627,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,1.1796972334774,0,0,0,0,1.19349733269765,0,0,1.56302802246618,31.4288033377707,0.327543835020193,9.90635777654203,0,0,0,0.0634158101939068,0,169.411649958869,1.98484471355718,0,8.1767953689341,0,0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| ||
|short_description=p2@GNE | |||
}} | }} |
Latest revision as of 09:36, 17 September 2015
Short description: | p2@GNE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GNE_5end |
Coexpression cluster: | C37_salivary_submaxillary_parotid_seminal_tongue_ductus_trachea |
Association with transcript: | 0bp_to_ENST00000543356_5end |
EntrezGene: | GNE |
HGNC: | 23657 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endodermal cell | 1.52e-09 | 58 |
epithelial cell of pancreas | 4.05e-08 | 4 |
epithelial cell | 6.12e-08 | 253 |
chorionic membrane mesenchymal stem cell | 8.85e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 1.00e-19 | 118 |
digestive system | 4.56e-18 | 145 |
digestive tract | 4.56e-18 | 145 |
primitive gut | 4.56e-18 | 145 |
endoderm-derived structure | 8.51e-18 | 160 |
endoderm | 8.51e-18 | 160 |
presumptive endoderm | 8.51e-18 | 160 |
larynx | 2.10e-15 | 9 |
foregut | 2.15e-13 | 87 |
upper respiratory tract | 1.72e-11 | 19 |
intestine | 2.37e-09 | 17 |
respiratory system | 1.68e-08 | 74 |
respiratory primordium | 2.75e-08 | 38 |
endoderm of foregut | 2.75e-08 | 38 |
gastrointestinal system | 3.80e-08 | 25 |
segment of respiratory tract | 4.42e-08 | 47 |
trunk region element | 1.63e-07 | 101 |
respiratory tract | 2.99e-07 | 54 |
egg chorion | 8.85e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.48e-12 | 106 |
cell type cancer | 7.31e-11 | 143 |
adenocarcinoma | 2.13e-09 | 25 |
pancreatic cancer | 4.05e-08 | 4 |