FFCP PHASE1:Hg19::chr13:47127293..47127321,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23143 | |EntrezGene=23143 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20309 | |HGNC=20309 | ||
|TSSclassifier=strong | |||
|UniProt=B7ZLL5,Q17R43,Q9Y2L9 | |UniProt=B7ZLL5,Q17R43,Q9Y2L9 | ||
|association_with_transcript=0bp_to_ENST00000311191,ENST00000443945,NM_001164211,NM_001164213,NM_015116,uc001vbj.2,uc001vbk.2,uc001vbl.3,uc010acp.2_5end | |association_with_transcript=0bp_to_ENST00000311191,ENST00000443945,NM_001164211,NM_001164213,NM_015116,uc001vbj.2,uc001vbk.2,uc001vbl.3,uc010acp.2_5end | ||
|cluster_id=chr13:47127293..47127321,+ | |||
|description=CAGE_peak_1_at_LRCH1_5end | |description=CAGE_peak_1_at_LRCH1_5end | ||
|id=chr13:47127293..47127321,+ | |id=chr13:47127293..47127321,+ | ||
|ontology_enrichment_celltype=CL:0000738!1.29e-26!140;CL:0002031!3.98e-23!124;CL:0002087!7.50e-22!119;CL:0000037!1.08e-19!172;CL:0000566!1.08e-19!172;CL:0002032!3.62e-18!165;CL:0000837!3.62e-18!165;CL:0000988!6.44e-18!182;CL:0000557!1.97e-17!71;CL:0000766!4.58e-16!76;CL:0002009!3.71e-15!65;CL:0002194!4.13e-14!63;CL:0000576!4.13e-14!63;CL:0000040!4.13e-14!63;CL:0000559!4.13e-14!63;CL:0000839!4.22e-14!70;CL:0002057!2.68e-13!42;CL:0000860!9.43e-12!45;CL:0000763!1.08e-10!112;CL:0000049!1.08e-10!112;CL:0000945!5.11e-10!24;CL:0000826!5.11e-10!24;CL:0000838!2.10e-08!52;CL:0000542!8.02e-08!53;CL:0000051!8.02e-08!53;CL:0000236!1.89e-07!14 | |ontology_enrichment_celltype=CL:0000738!1.29e-26!140;CL:0002031!3.98e-23!124;CL:0002087!7.50e-22!119;CL:0000037!1.08e-19!172;CL:0000566!1.08e-19!172;CL:0002032!3.62e-18!165;CL:0000837!3.62e-18!165;CL:0000988!6.44e-18!182;CL:0000557!1.97e-17!71;CL:0000766!4.58e-16!76;CL:0002009!3.71e-15!65;CL:0002194!4.13e-14!63;CL:0000576!4.13e-14!63;CL:0000040!4.13e-14!63;CL:0000559!4.13e-14!63;CL:0000839!4.22e-14!70;CL:0002057!2.68e-13!42;CL:0000860!9.43e-12!45;CL:0000763!1.08e-10!112;CL:0000049!1.08e-10!112;CL:0000945!5.11e-10!24;CL:0000826!5.11e-10!24;CL:0000838!2.10e-08!52;CL:0000542!8.02e-08!53;CL:0000051!8.02e-08!53;CL:0000236!1.89e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000473;3.75e-11;39!CL:0000234;3.75e-11;39!CL:0000860;4.78e-11;33!CL:0002057;4.78e-11;33!CL:0000945;5.80e-10;24!CL:0000576;4.00e-09;48!CL:0000766;8.96e-08;69!CL:0000738;1.87e-07;136!CL:0000236;4.64e-07;13!CL:0002087;5.00e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,5.66e-28,136;CL:0002031,1.80e-24,120;CL:0002087,3.51e-23,115;CL:0000037,1.29e-20,168;CL:0000557,4.02e-19,67;CL:0002032,4.56e-19,161;CL:0000837,4.56e-19,161;CL:0000988,8.39e-19,177;CL:0000766,1.47e-17,72;CL:0002009,8.92e-17,61;CL:0002194,1.12e-15,59;CL:0000576,1.12e-15,59;CL:0000040,1.12e-15,59;CL:0000559,1.12e-15,59;CL:0000839,1.54e-15,66;CL:0000473,1.92e-15,48;CL:0000234,1.92e-15,48;CL:0000860,2.68e-13,42;CL:0002057,2.68e-13,42;CL:0000763,1.71e-11,108;CL:0000049,1.71e-11,108;CL:0000945,5.11e-10,24;CL:0000826,5.11e-10,24;CL:0000838,2.10e-08,52;CL:0000542,8.02e-08,53;CL:0000051,8.02e-08,53;CL:0000236,1.89e-07,14 | |||
|ontology_enrichment_development_v019=CL:0002057;7.49e-10;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!4.92e-17!112;UBERON:0002390!2.97e-16!102;UBERON:0003061!2.97e-16!102;UBERON:0002371!2.98e-14!80;UBERON:0002405!3.94e-14!115;UBERON:0001474!6.13e-14!86;UBERON:0004765!2.18e-10!101;UBERON:0001434!2.18e-10!101;UBERON:0007023!3.86e-10!115 | |ontology_enrichment_uberon=UBERON:0002193!4.92e-17!112;UBERON:0002390!2.97e-16!102;UBERON:0003061!2.97e-16!102;UBERON:0002371!2.98e-14!80;UBERON:0002405!3.94e-14!115;UBERON:0001474!6.13e-14!86;UBERON:0004765!2.18e-10!101;UBERON:0001434!2.18e-10!101;UBERON:0007023!3.86e-10!115 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002405,1.73e-18,93;UBERON:0002193,3.48e-18,108;UBERON:0002390,1.91e-17,98;UBERON:0003061,1.91e-17,98;UBERON:0002371,1.49e-15,76;UBERON:0001474,3.76e-15,82;UBERON:0004765,1.41e-11,90;UBERON:0001434,3.56e-10,100;UBERON:0007023,5.70e-10,114 | |||
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| ||
|short_description=p1@LRCH1 | |short_description=p1@LRCH1 | ||
}} | }} |
Latest revision as of 14:11, 17 September 2015
Short description: | p1@LRCH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LRCH1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000311191, ENST00000443945, NM_001164211, NM_001164213, NM_015116, uc001vbj.2, uc001vbk.2, uc001vbl.3, uc010acp.2_5end |
EntrezGene: | LRCH1 |
HGNC: | 20309 |
UniProt: | B7ZLL5Q17R43Q9Y2L9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 5.66e-28 | 136 |
hematopoietic lineage restricted progenitor cell | 1.80e-24 | 120 |
nongranular leukocyte | 3.51e-23 | 115 |
hematopoietic stem cell | 1.29e-20 | 168 |
granulocyte monocyte progenitor cell | 4.02e-19 | 67 |
hematopoietic oligopotent progenitor cell | 4.56e-19 | 161 |
hematopoietic multipotent progenitor cell | 4.56e-19 | 161 |
hematopoietic cell | 8.39e-19 | 177 |
myeloid leukocyte | 1.47e-17 | 72 |
macrophage dendritic cell progenitor | 8.92e-17 | 61 |
monopoietic cell | 1.12e-15 | 59 |
monocyte | 1.12e-15 | 59 |
monoblast | 1.12e-15 | 59 |
promonocyte | 1.12e-15 | 59 |
myeloid lineage restricted progenitor cell | 1.54e-15 | 66 |
defensive cell | 1.92e-15 | 48 |
phagocyte | 1.92e-15 | 48 |
classical monocyte | 2.68e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.68e-13 | 42 |
myeloid cell | 1.71e-11 | 108 |
common myeloid progenitor | 1.71e-11 | 108 |
lymphocyte of B lineage | 5.11e-10 | 24 |
pro-B cell | 5.11e-10 | 24 |
lymphoid lineage restricted progenitor cell | 2.10e-08 | 52 |
lymphocyte | 8.02e-08 | 53 |
common lymphoid progenitor | 8.02e-08 | 53 |
B cell | 1.89e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
immune system | 1.73e-18 | 93 |
hemolymphoid system | 3.48e-18 | 108 |
hematopoietic system | 1.91e-17 | 98 |
blood island | 1.91e-17 | 98 |
bone marrow | 1.49e-15 | 76 |
bone element | 3.76e-15 | 82 |
skeletal element | 1.41e-11 | 90 |
skeletal system | 3.56e-10 | 100 |
adult organism | 5.70e-10 | 114 |