FFCP PHASE1:Hg19::chr1:156123359..156123387,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:156123359..156123387,+ to FFCP PHASE1:Hg19::chr1:156123359..156123387,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=64218 | |EntrezGene=64218 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10729 | |HGNC=10729 | ||
|TSSclassifier=strong | |||
|UniProt=Q5TCJ5,Q5TCJ6,B3KR76,Q9H3S1 | |UniProt=Q5TCJ5,Q5TCJ6,B3KR76,Q9H3S1 | ||
|association_with_transcript=0bp_to_ENST00000368283,ENST00000368284,ENST00000368286,ENST00000544376,NM_001193302,uc001fnm.2,uc001fnn.2_5end | |||
|cluster_id=chr1:156123359..156123387,+ | |||
|description=CAGE_peak_2_at_SEMA4A_5end | |||
|id=chr1:156123359..156123387,+ | |||
|ontology_enrichment_celltype=CL:0002076!1.14e-18!43;CL:0000066!1.45e-14!254;CL:0000223!1.41e-13!59;CL:0002368!1.86e-12!13;CL:0002202!1.30e-08!9;CL:0002632!1.30e-08!9;CL:0002159!4.10e-08!13;CL:0002251!8.63e-08!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.37e-17;42!CL:0002368;1.60e-16;13!CL:0002202;2.68e-11;9!CL:0002632;2.68e-11;9!CL:0002159;5.64e-10;14!CL:0000244;8.49e-08;4!CL:0000731;8.49e-08;4!CL:0002251;1.37e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.36e-22,42;CL:0000066,1.95e-18,253;CL:0002368,1.53e-16,13;CL:0000223,2.24e-15,58;CL:0002202,2.54e-11,9;CL:0002632,2.54e-11,9;CL:0002159,5.74e-10,14;CL:0000244,7.95e-08,4;CL:0000731,7.95e-08,4;CL:0002251,1.36e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000223;9.03e-09;58 | |||
|ontology_enrichment_disease=DOID:1749!1.36e-10!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.89e-12;14!DOID:5093;6.45e-07;4!DOID:1612;6.45e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.96e-12,14;DOID:5093,6.66e-07,4;DOID:1612,6.66e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.27e-22!169;UBERON:0000925!1.27e-22!169;UBERON:0006595!1.27e-22!169;UBERON:0001007!1.59e-15!155;UBERON:0001555!1.59e-15!155;UBERON:0007026!1.59e-15!155;UBERON:0001004!6.76e-15!72;UBERON:0007023!1.07e-12!115;UBERON:0004921!2.06e-12!129;UBERON:0004185!2.06e-12!129;UBERON:0000464!3.40e-12!104;UBERON:0000077!9.93e-12!130;UBERON:0000161!2.34e-10!35;UBERON:0000466!2.50e-10!126;UBERON:0000062!2.76e-10!511;UBERON:0000065!8.20e-10!53;UBERON:0000166!1.04e-09!21;UBERON:0005631!1.89e-09!14;UBERON:0000158!1.89e-09!14;UBERON:0005178!3.56e-09!34;UBERON:0002224!3.56e-09!34;UBERON:0005911!7.96e-09!82;UBERON:0000064!8.91e-09!219;UBERON:0005181!9.80e-09!35;UBERON:0005153!3.31e-08!37;UBERON:0001041!4.68e-08!98;UBERON:0000468!9.02e-08!659;UBERON:0000915!1.10e-07!52;UBERON:0007196!1.22e-07!14;UBERON:0001558!1.22e-07!14;UBERON:0005177!1.39e-07!107;UBERON:0003124!2.24e-07!7;UBERON:0001008!2.27e-07!45;UBERON:0000165!2.85e-07!28;UBERON:0000930!2.85e-07!28;UBERON:0004175!3.67e-07!25;UBERON:0000365!5.05e-07!5;UBERON:0000922!5.96e-07!612;UBERON:0006554!5.99e-07!44 | |||
|ontology_enrichment_uberon_v019=UBERON:0000974;1.13e-09;6!UBERON:0005178;1.53e-09;34!UBERON:0002224;1.53e-09;34!UBERON:0007196;1.64e-09;15!UBERON:0001558;1.64e-09;15!UBERON:0000365;5.93e-09;5!UBERON:0005181;6.42e-09;35!UBERON:0000161;1.62e-08;19!UBERON:0000166;1.62e-08;19!UBERON:0000165;2.52e-08;28!UBERON:0000486;1.16e-07;12!UBERON:0005910;2.40e-07;6!UBERON:0000915;2.42e-07;52!UBERON:0000344;2.46e-07;20!UBERON:0005911;3.31e-07;36!UBERON:0003343;3.74e-07;4!UBERON:0004785;3.74e-07;4!UBERON:0001987;4.21e-07;4!UBERON:0001004;6.68e-07;65!UBERON:0003729;9.75e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.73e-20,160;UBERON:0000925,2.73e-20,160;UBERON:0006595,2.73e-20,160;UBERON:0001004,1.30e-17,74;UBERON:0000065,1.48e-12,54;UBERON:0001007,2.19e-12,145;UBERON:0001555,2.19e-12,145;UBERON:0007026,2.19e-12,145;UBERON:0006554,1.15e-11,47;UBERON:0001008,2.75e-11,48;UBERON:0005178,5.79e-11,34;UBERON:0002224,5.79e-11,34;UBERON:0000161,7.11e-11,36;UBERON:0005631,8.36e-11,14;UBERON:0000158,8.36e-11,14;UBERON:0005181,1.67e-10,35;UBERON:0000915,3.45e-10,52;UBERON:0005911,5.45e-10,82;UBERON:0005153,6.26e-10,37;UBERON:0000166,7.12e-10,22;UBERON:0007196,1.54e-09,15;UBERON:0001558,1.54e-09,15;UBERON:0005157,5.31e-09,47;UBERON:0000365,5.60e-09,5;UBERON:0000974,8.36e-09,10;UBERON:0004921,8.75e-09,118;UBERON:0000153,3.29e-08,62;UBERON:0007811,3.29e-08,62;UBERON:0000165,6.36e-08,29;UBERON:0000930,6.36e-08,29;UBERON:0004175,6.42e-08,25;UBERON:0005177,7.45e-08,101;UBERON:0003102,1.31e-07,99;UBERON:0001041,1.94e-07,87;UBERON:0003124,2.26e-07,7;UBERON:0005910,2.29e-07,6;UBERON:0000344,2.51e-07,20;UBERON:0003343,3.65e-07,4;UBERON:0004785,3.65e-07,4;UBERON:0001987,4.57e-07,4;UBERON:0004340,4.57e-07,4;UBERON:0000072,4.65e-07,47;UBERON:0009569,5.44e-07,112;UBERON:0008947,7.61e-07,38;UBERON:0003258,7.61e-07,38;UBERON:0003729,9.63e-07,13 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,5.16041266653169,25.8186432149798,13.1064823278103,10.0231451726812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0.309632246632152,15.6301608161418,25.0000912585948,29.580320813343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.12584087817795,38.979595847302,25.9549109949101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,37.5040884842579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.9910864480622,9.27336810008838,8.03052867089211,0.121973706129595,0.132529768321485,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,2.09080345523293,0,8.56052226187279,29.2244558469811,10.1534262135747,15.3696818963159,0,0,0,0,0,0,0,0,7.90204397959275,16.3112370798026,0,0,0,5.62403003920662,6.71928512795438,6.52165447314978,1.79117045405697,10.4628217865026,3.06706143332169,0,0,0,0.144119953416961,0.25248486685276,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0.184369168541703,0,0,0,0,0,0,10.0032098577266,13.3148351608398,22.3768817063963,0,0,0,0,0,0,0,0,0,0,0,0,0,3.60911646545913,6.35358823657685,0,0,0,4.96319574198153,1.46329140498388,0.784349769176855,0,0.422206515571503,0,0,0,0,0,0,4.33289664176565,5.81753206250107,0.671624264166535,0,0,0,0,0,3.40035338437484,0,0,14.3566384499043,13.0012049207304,0,0,0,0,0,0,0,0,0,11.2393742445465,10.7626437724459,19.7799704366605,9.20535805785504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.72553310873,24.1308819192883,10.8890984861323,4.61304623806218,21.5252686335615,21.9012918367913,37.6915630506174,18.8373188169707,0,0,0,0,0,0,0,0,0,0,11.0268097191464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,2.86493381685228,9.79983446747707,2.45728561679386,0,0,0,0,0,1.79323189425963,0.276283915531148,0,0,0,0,4.31368085507169,5.01259289091706,0,3.84709281984041,0,0,0,0.371072392647405,0,4.16684417736373,42.8553999981359,5.07499702804355,37.2104575893584,11.94992156376,0.945550727071745,0,0,0,0,0,0,0,0,0.438770794307945,0,21.0529853860691,5.38651809526579,0,0.69169171316418,0.0897576444097721,0,0.638002319463839,1.09917112082235,1.5991043280559,0,0,0,0,0,0,0,0,0,24.4849212238722,0,0,0.995261931078505,0.442287822516696,1.22206028986725,0,0,0,0,0,0,0,27.9800405072888,0,17.7562981282226,0,0,0,0,0,0,0,0,0,18.7842300379663,0,5.55391162672419,15.9727607785436,0.609414446062818,39.1387736862147,0,0,0,0,21.2405946109639,0,2.03382666702479,0,0,0.316553979779393,0,1.52301758477914,11.3130087211857,0,0,0,0,0,0,24.0407915309131,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0.2249738915515,6.96421759102155,0.728994679896296,39.5812931367134,13.2393588262653,22.3981091336442,0,0,1.34340638123612,0,0,0,0,0,0,0,0,0,0.113312091520126,0.146552233678082,0,0,0,0,6.34333520085005,10.4651664316341,16.8208606456643,13.2556497711103,1.9846640872478,0,0,19.7885789908756,0,0,0,0,1.88464915500281,0,0,0,0,0,0.0620964029413835,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0.132864840313363,0,0,0,0,0.59996218756479,0,0,0,0,7.13385489369167,11.1973906805935,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449604575675217,0,0.159633859057151,0,0,0.0691572524642179,0.322951291263702,0,28.9535769578026,3.89300087047543,22.1948604211232,14.671759601093,0,0,0,1.12815492523886,0,1.56302802246618,0.261906694481422,0.655087670040387,0.295712172434091,0.135075169236789,0,0.206686796501184,0.19024743058172,0,27.9611461097163,7.44316767583941,0,22.8694745474876,0,0,0,0.455324382702595,11.1764986404925,0,0,0,0.591954962065642,0,1.55723962648897,10.4395813491184,0,0.280272163313789,0.913158720509496,0,0,0.357382720883282,0,0,0,0,0.414432328326074,0,0.691259661814092,31.4065971938803,0,0,18.2056431582099,2.7492824225286,0,0,11.6329649069704,0.883352102537187,0,0,0,0,9.22850886812365,0,0,0,0.79062257427272,0,1.20770274853339,0.308696632431779,0.655678681511872,0,0.490296643507811,0,0,0,0.4226557275834,0,0.0939839179798536,0.0644578879735772,0,9.2848048074942,14.4686897403434,0,0,24.7713813038452,0,0,0.747906392100062,0,1.0580536810308,0,0,0,0,0,0,0.101988829741982,0,0,0,1.43979526614655,0.267964130156178,0,0,11.9411029864549,9.52257725854961,1.67931165573616,1.24149428591716,0,34.6240541033217,8.89315631416165,13.7161551175086,4.44903291410865,19.3973912682012,17.9305513481691,9.64715033983439,8.46593993554135,0,0,0,2.34640942403454,1.22241444182866,4.47585796147312,0.665756774185513,2.21401172950129,0 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| ||
|short_description=p2@SEMA4A | |||
}} | }} |
Latest revision as of 15:14, 17 September 2015
Short description: | p2@SEMA4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SEMA4A_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000368283, ENST00000368284, ENST00000368286, ENST00000544376, NM_001193302, uc001fnm.2, uc001fnn.2_5end |
EntrezGene: | SEMA4A |
HGNC: | 10729 |
UniProt: | Q5TCJ5Q5TCJ6B3KR76Q9H3S1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.36e-22 | 42 |
epithelial cell | 1.95e-18 | 253 |
respiratory epithelial cell | 1.53e-16 | 13 |
endodermal cell | 2.24e-15 | 58 |
epithelial cell of tracheobronchial tree | 2.54e-11 | 9 |
epithelial cell of lower respiratory tract | 2.54e-11 | 9 |
general ecto-epithelial cell | 5.74e-10 | 14 |
transitional epithelial cell | 7.95e-08 | 4 |
urothelial cell | 7.95e-08 | 4 |
epithelial cell of alimentary canal | 1.36e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.96e-12 | 14 |
thoracic cancer | 6.66e-07 | 4 |
breast cancer | 6.66e-07 | 4 |