FFCP PHASE1:Hg19::chr17:75315534..75315612,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:75315534..75315612,+ to FFCP PHASE1:Hg19::chr17:75315534..75315612,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10801 | |EntrezGene=10801 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7323 | |HGNC=7323 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UHD8 | |UniProt=Q9UHD8 | ||
|association_with_transcript=0bp_to_ENST00000329047,NM_006640,uc002jtu.3_5end | |||
|cluster_id=chr17:75315534..75315612,+ | |||
|coexpression_cluster_id=C3685 | |||
|description=CAGE_peak_4_at_SEPT9_5end | |||
|id=chr17:75315534..75315612,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.01e-30!180;CL:0000048!4.79e-29!430;CL:0000723!2.04e-27!436;CL:0000034!7.91e-25!444;CL:0002320!2.52e-19!365;CL:0002371!7.21e-19!591;CL:0000134!1.43e-17!358;CL:0000219!7.31e-17!390;CL:0000057!1.03e-16!75;CL:0000183!1.02e-15!59;CL:0000680!4.35e-15!57;CL:0000056!4.35e-15!57;CL:0000355!4.35e-15!57;CL:0000187!3.38e-14!54;CL:0000144!7.20e-14!625;CL:0000192!1.19e-13!42;CL:0000514!1.19e-13!42;CL:0000359!7.61e-12!32;CL:0002620!5.72e-10!23;CL:0000393!8.44e-10!60;CL:0000211!8.44e-10!60;CL:0000548!7.32e-09!679;CL:0000004!7.32e-09!679;CL:0000255!7.32e-09!679;CL:0000012!1.24e-08!682;CL:0000557!1.46e-07!71;CL:0002194!4.07e-07!63;CL:0000576!4.07e-07!63;CL:0000040!4.07e-07!63;CL:0000559!4.07e-07!63;CL:0002009!4.88e-07!65 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.15e-11;32!CL:0000192;3.33e-10;43!CL:0002620;4.08e-10;23!CL:0000187;9.19e-09;55!CL:0000134;1.21e-08;55!CL:0000057;6.26e-08;73!CL:0002320;2.85e-07;188!CL:0000048;4.75e-07;58!CL:0000723;8.55e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,4.24e-30,427;CL:0000723,1.54e-28,433;CL:0000034,5.21e-26,441;CL:0002320,8.98e-20,361;CL:0000134,5.49e-18,354;CL:0000219,1.92e-17,386;CL:0000057,5.23e-17,76;CL:0000680,2.25e-15,58;CL:0000056,2.25e-15,58;CL:0000355,2.25e-15,58;CL:0000187,1.80e-14,55;CL:0000192,6.78e-14,43;CL:0000514,6.78e-14,43;CL:0000359,5.49e-12,32;CL:0000393,2.99e-10,61;CL:0000211,2.99e-10,61;CL:0002620,4.38e-10,23;CL:0000557,2.25e-07,67;CL:0002194,5.16e-07,59;CL:0000576,5.16e-07,59;CL:0000040,5.16e-07,59;CL:0000559,5.16e-07,59;CL:0002009,6.27e-07,61 | |||
|ontology_enrichment_development_v019=CL:0000514;3.33e-10;43!CL:0000355;1.03e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!8.75e-25!167;UBERON:0002384!1.27e-20!375;UBERON:0000914!2.23e-18!83;UBERON:0002329!2.23e-18!83;UBERON:0003077!2.23e-18!83;UBERON:0003059!2.23e-18!83;UBERON:0007282!2.23e-18!83;UBERON:0009618!2.23e-18!83;UBERON:0007285!2.23e-18!83;UBERON:0004290!1.16e-17!70;UBERON:0001134!8.03e-14!61;UBERON:0002036!8.03e-14!61;UBERON:0003082!8.03e-14!61;UBERON:0002385!8.29e-14!63;UBERON:0001015!8.29e-14!63;UBERON:0000383!8.29e-14!63;UBERON:0000486!2.41e-13!82;UBERON:0003081!4.69e-13!216;UBERON:0000926!2.96e-12!448;UBERON:0004120!2.96e-12!448;UBERON:0006603!2.96e-12!448;UBERON:0004765!7.06e-11!101;UBERON:0001434!7.06e-11!101;UBERON:0005256!2.90e-10!143;UBERON:0001474!1.58e-09!86;UBERON:0002371!1.97e-09!80;UBERON:0000479!1.33e-08!787;UBERON:0002199!2.04e-08!45;UBERON:0002416!2.04e-08!45;UBERON:0003102!9.86e-08!95;UBERON:0002097!2.24e-07!40;UBERON:0004872!8.12e-07!84 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,1.45e-25,167;UBERON:0002384,4.46e-21,371;UBERON:0007503,5.32e-19,78;UBERON:0000926,5.66e-19,315;UBERON:0004120,5.66e-19,315;UBERON:0006603,5.66e-19,315;UBERON:0002329,5.43e-18,71;UBERON:0003059,5.43e-18,71;UBERON:0007282,5.43e-18,71;UBERON:0004290,5.43e-18,71;UBERON:0009618,5.43e-18,71;UBERON:0003077,1.24e-17,72;UBERON:0007285,1.24e-17,72;UBERON:0007524,1.73e-17,73;UBERON:0001134,4.23e-14,62;UBERON:0002036,4.23e-14,62;UBERON:0003082,4.23e-14,62;UBERON:0002385,4.35e-14,64;UBERON:0001015,4.35e-14,64;UBERON:0000383,4.35e-14,64;UBERON:0000486,2.43e-13,83;UBERON:0003081,2.98e-13,203;UBERON:0001434,3.05e-11,100;UBERON:0005256,2.84e-10,122;UBERON:0001474,1.82e-09,82;UBERON:0003104,2.07e-09,160;UBERON:0009142,2.07e-09,160;UBERON:0002371,2.52e-09,76;UBERON:0004765,3.77e-09,90;UBERON:0002199,7.20e-09,46;UBERON:0002416,7.20e-09,46;UBERON:0000479,5.30e-08,773;UBERON:0002097,8.27e-08,41;UBERON:0002405,5.31e-07,93 | |||
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| ||
|short_description=p4@SEPT9 | |||
}} | }} |
Latest revision as of 18:16, 17 September 2015
Short description: | p4@SEPT9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SEPT9_5end |
Coexpression cluster: | C3685_Fibroblast_Pericytes_Mesenchymal_Meningeal_Trabecular_Adipocyte_Saos2 |
Association with transcript: | 0bp_to_ENST00000329047, NM_006640, uc002jtu.3_5end |
EntrezGene: | SEPT9 |
HGNC: | 7323 |
UniProt: | Q9UHD8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 4.24e-30 | 427 |
somatic stem cell | 1.54e-28 | 433 |
stem cell | 5.21e-26 | 441 |
connective tissue cell | 8.98e-20 | 361 |
mesenchymal cell | 5.49e-18 | 354 |
motile cell | 1.92e-17 | 386 |
fibroblast | 5.23e-17 | 76 |
muscle precursor cell | 2.25e-15 | 58 |
myoblast | 2.25e-15 | 58 |
multi-potent skeletal muscle stem cell | 2.25e-15 | 58 |
muscle cell | 1.80e-14 | 55 |
smooth muscle cell | 6.78e-14 | 43 |
smooth muscle myoblast | 6.78e-14 | 43 |
vascular associated smooth muscle cell | 5.49e-12 | 32 |
electrically responsive cell | 2.99e-10 | 61 |
electrically active cell | 2.99e-10 | 61 |
skin fibroblast | 4.38e-10 | 23 |
granulocyte monocyte progenitor cell | 2.25e-07 | 67 |
monopoietic cell | 5.16e-07 | 59 |
monocyte | 5.16e-07 | 59 |
monoblast | 5.16e-07 | 59 |
promonocyte | 5.16e-07 | 59 |
macrophage dendritic cell progenitor | 6.27e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 1.45e-25 | 167 |
connective tissue | 4.46e-21 | 371 |
epithelial vesicle | 5.32e-19 | 78 |
mesoderm | 5.66e-19 | 315 |
mesoderm-derived structure | 5.66e-19 | 315 |
presumptive mesoderm | 5.66e-19 | 315 |
somite | 5.43e-18 | 71 |
presomitic mesoderm | 5.43e-18 | 71 |
presumptive segmental plate | 5.43e-18 | 71 |
dermomyotome | 5.43e-18 | 71 |
trunk paraxial mesoderm | 5.43e-18 | 71 |
paraxial mesoderm | 1.24e-17 | 72 |
presumptive paraxial mesoderm | 1.24e-17 | 72 |
dense mesenchyme tissue | 1.73e-17 | 73 |
skeletal muscle tissue | 4.23e-14 | 62 |
striated muscle tissue | 4.23e-14 | 62 |
myotome | 4.23e-14 | 62 |
muscle tissue | 4.35e-14 | 64 |
musculature | 4.35e-14 | 64 |
musculature of body | 4.35e-14 | 64 |
multilaminar epithelium | 2.43e-13 | 83 |
lateral plate mesoderm | 2.98e-13 | 203 |
skeletal system | 3.05e-11 | 100 |
trunk mesenchyme | 2.84e-10 | 122 |
bone element | 1.82e-09 | 82 |
mesenchyme | 2.07e-09 | 160 |
entire embryonic mesenchyme | 2.07e-09 | 160 |
bone marrow | 2.52e-09 | 76 |
skeletal element | 3.77e-09 | 90 |
integument | 7.20e-09 | 46 |
integumental system | 7.20e-09 | 46 |
tissue | 5.30e-08 | 773 |
skin of body | 8.27e-08 | 41 |
immune system | 5.31e-07 | 93 |