FFCP PHASE1:Hg19::chr15:45694380..45694430,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:45694380..45694430,-
|short_description=p2@GATM
|description=CAGE_peak_2_at_GATM_5end
|association_with_transcript=0bp_to_ENST00000561148_5end
|EntrezGen...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2628 | |EntrezGene=2628 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4175 | |HGNC=4175 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000561148_5end | |||
|cluster_id=chr15:45694380..45694430,- | |||
|description=CAGE_peak_2_at_GATM_5end | |||
|id=chr15:45694380..45694430,- | |||
|ontology_enrichment_celltype=CL:0000988!7.35e-22!182;CL:0000738!2.09e-21!140;CL:0000037!8.78e-20!172;CL:0000566!8.78e-20!172;CL:0002031!3.01e-19!124;CL:0002032!1.67e-18!165;CL:0000837!1.67e-18!165;CL:0002087!2.52e-18!119;CL:0000838!1.14e-16!52;CL:0000542!1.33e-16!53;CL:0000051!1.33e-16!53;CL:0000945!9.25e-11!24;CL:0000826!9.25e-11!24 | |||
|ontology_enrichment_celltype_v019=CL:0000945;9.88e-15;24!CL:0000542;4.40e-14;53!CL:0002393;2.06e-10;6!CL:0002397;2.06e-10;6!CL:0000624;2.77e-10;6!CL:0000084;5.74e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,5.01e-24,52;CL:0000542,2.23e-23,53;CL:0000051,2.23e-23,53;CL:0000738,5.48e-22,136;CL:0002087,3.20e-21,115;CL:0002031,6.56e-21,120;CL:0000988,1.16e-18,177;CL:0000037,2.77e-16,168;CL:0002032,5.27e-16,161;CL:0000837,5.27e-16,161;CL:0000945,1.90e-15,24;CL:0000826,1.90e-15,24;CL:0000624,1.16e-10,6;CL:0000084,4.38e-07,25;CL:0000827,4.38e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000051;4.40e-14;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.30e-10!57;UBERON:0005068!5.30e-10!57;UBERON:0006241!5.30e-10!57;UBERON:0007135!5.30e-10!57;UBERON:0002616!5.83e-08!59;UBERON:0002780!2.43e-07!41;UBERON:0001890!2.43e-07!41;UBERON:0006240!2.43e-07!41;UBERON:0000955!5.00e-07!69;UBERON:0006238!5.00e-07!69;UBERON:0003080!7.64e-07!42;UBERON:0002405!8.15e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;4.99e-07;53!UBERON:0002616;4.99e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,3.66e-10,56;UBERON:0005068,3.66e-10,56;UBERON:0006241,3.66e-10,56;UBERON:0007135,3.66e-10,56;UBERON:0000073,5.83e-10,53;UBERON:0002616,5.83e-10,53;UBERON:0000955,5.56e-07,68;UBERON:0006238,5.56e-07,68 | |||
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| ||
|short_description=p2@GATM | |||
}} | }} |
Latest revision as of 20:03, 17 September 2015
Short description: | p2@GATM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GATM_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000561148_5end |
EntrezGene: | GATM |
HGNC: | 4175 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 5.01e-24 | 52 |
lymphocyte | 2.23e-23 | 53 |
common lymphoid progenitor | 2.23e-23 | 53 |
leukocyte | 5.48e-22 | 136 |
nongranular leukocyte | 3.20e-21 | 115 |
hematopoietic lineage restricted progenitor cell | 6.56e-21 | 120 |
hematopoietic cell | 1.16e-18 | 177 |
hematopoietic stem cell | 2.77e-16 | 168 |
hematopoietic oligopotent progenitor cell | 5.27e-16 | 161 |
hematopoietic multipotent progenitor cell | 5.27e-16 | 161 |
lymphocyte of B lineage | 1.90e-15 | 24 |
pro-B cell | 1.90e-15 | 24 |
CD4-positive, alpha-beta T cell | 1.16e-10 | 6 |
T cell | 4.38e-07 | 25 |
pro-T cell | 4.38e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
neural tube | 3.66e-10 | 56 |
neural rod | 3.66e-10 | 56 |
future spinal cord | 3.66e-10 | 56 |
neural keel | 3.66e-10 | 56 |
regional part of nervous system | 5.83e-10 | 53 |
regional part of brain | 5.83e-10 | 53 |
brain | 5.56e-07 | 68 |
future brain | 5.56e-07 | 68 |