FFCP PHASE1:Hg19::chr17:76123130..76123168,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11322 | |EntrezGene=11322 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18021 | |HGNC=18021 | ||
|TSSclassifier=strong | |||
|UniProt=Q7Z403 | |UniProt=Q7Z403 | ||
|association_with_transcript=-91bp_to_uc002juj.1_5end | |association_with_transcript=-91bp_to_uc002juj.1_5end | ||
|cluster_id=chr17:76123130..76123168,- | |||
|coexpression_cluster_id=C92 | |coexpression_cluster_id=C92 | ||
|description=CAGE_peak_13_at_TMC6_5end | |description=CAGE_peak_13_at_TMC6_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002057!3.90e-27!42;CL:0000860!7.02e-25!45;CL:0000763!8.81e-22!112;CL:0000049!8.81e-22!112;CL:0000037!1.04e-19!172;CL:0000566!1.04e-19!172;CL:0000766!4.60e-19!76;CL:0002393!4.72e-19!9;CL:0002397!4.72e-19!9;CL:0000988!5.58e-19!182;CL:0002194!7.15e-19!63;CL:0000576!7.15e-19!63;CL:0000040!7.15e-19!63;CL:0000559!7.15e-19!63;CL:0002032!1.10e-18!165;CL:0000837!1.10e-18!165;CL:0002009!4.35e-18!65;CL:0000839!9.24e-18!70;CL:0000557!2.05e-17!71;CL:0002087!1.04e-15!119;CL:0000738!3.71e-15!140;CL:0002031!1.62e-13!124;CL:0000875!1.33e-09!3;CL:0002396!1.33e-09!3 | |ontology_enrichment_celltype=CL:0002057!3.90e-27!42;CL:0000860!7.02e-25!45;CL:0000763!8.81e-22!112;CL:0000049!8.81e-22!112;CL:0000037!1.04e-19!172;CL:0000566!1.04e-19!172;CL:0000766!4.60e-19!76;CL:0002393!4.72e-19!9;CL:0002397!4.72e-19!9;CL:0000988!5.58e-19!182;CL:0002194!7.15e-19!63;CL:0000576!7.15e-19!63;CL:0000040!7.15e-19!63;CL:0000559!7.15e-19!63;CL:0002032!1.10e-18!165;CL:0000837!1.10e-18!165;CL:0002009!4.35e-18!65;CL:0000839!9.24e-18!70;CL:0000557!2.05e-17!71;CL:0002087!1.04e-15!119;CL:0000738!3.71e-15!140;CL:0002031!1.62e-13!124;CL:0000875!1.33e-09!3;CL:0002396!1.33e-09!3 | ||
|ontology_enrichment_celltype_v019=CL:0000875;3.79e-55;3!CL:0002396;3.79e-55;3!CL:0002393;6.50e-13;6!CL:0002397;6.50e-13;6!CL:0000576;5.62e-08;48!CL:0000766;1.40e-07;69!CL:0000767;2.79e-07;3 | |ontology_enrichment_celltype_v019=CL:0000875;3.79e-55;3!CL:0002396;3.79e-55;3!CL:0002393;6.50e-13;6!CL:0002397;6.50e-13;6!CL:0000576;5.62e-08;48!CL:0000766;1.40e-07;69!CL:0000767;2.79e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000875,3.47e-55,3;CL:0002396,3.47e-55,3;CL:0002393,3.06e-50,9;CL:0002397,3.06e-50,9;CL:0000860,2.03e-15,42;CL:0002057,2.03e-15,42;CL:0000473,1.76e-13,48;CL:0000234,1.76e-13,48;CL:0000763,7.17e-13,108;CL:0000049,7.17e-13,108;CL:0000766,7.93e-12,72;CL:0002194,9.31e-11,59;CL:0000576,9.31e-11,59;CL:0000040,9.31e-11,59;CL:0000559,9.31e-11,59;CL:0002009,2.10e-10,61;CL:0000839,1.29e-09,66;CL:0000557,1.80e-09,67;CL:0002032,1.89e-08,161;CL:0000837,1.89e-08,161;CL:0000037,4.52e-08,168;CL:0000988,1.26e-07,177;CL:0000767,3.16e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0004872;3.30e-11;7!CL:0002057;4.16e-11;42 | |ontology_enrichment_development_v019=UBERON:0004872;3.30e-11;7!CL:0002057;4.16e-11;42 | ||
|ontology_enrichment_disease=DOID:1240!6.79e-07!39 | |ontology_enrichment_disease=DOID:1240!6.79e-07!39 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.70e-21!102;UBERON:0003061!1.70e-21!102;UBERON:0002193!9.79e-19!112;UBERON:0002371!1.09e-14!80;UBERON:0002405!1.98e-14!115;UBERON:0001474!3.41e-13!86;UBERON:0004765!2.92e-10!101;UBERON:0001434!2.92e-10!101;UBERON:0003081!3.02e-07!216 | |ontology_enrichment_uberon=UBERON:0002390!1.70e-21!102;UBERON:0003061!1.70e-21!102;UBERON:0002193!9.79e-19!112;UBERON:0002371!1.09e-14!80;UBERON:0002405!1.98e-14!115;UBERON:0001474!3.41e-13!86;UBERON:0004765!2.92e-10!101;UBERON:0001434!2.92e-10!101;UBERON:0003081!3.02e-07!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0002106;8.94e-25;3!UBERON:0004177;2.70e-15;5!UBERON:0005057;2.70e-15;5 | |ontology_enrichment_uberon_v019=UBERON:0002106;8.94e-25;3!UBERON:0004177;2.70e-15;5!UBERON:0005057;2.70e-15;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,8.95e-25,3;UBERON:0004854,8.95e-25,3;UBERON:0009034,8.95e-25,3;UBERON:0002095,8.95e-25,3;UBERON:0004782,8.95e-25,3;UBERON:0003281,8.95e-25,3;UBERON:0009664,8.95e-25,3;UBERON:0002296,8.95e-25,3;UBERON:0005602,8.95e-25,3;UBERON:0001179,8.95e-25,3;UBERON:0006293,8.95e-25,3;UBERON:0002405,7.54e-12,93;UBERON:0002390,3.17e-11,98;UBERON:0003061,3.17e-11,98;UBERON:0004177,3.30e-11,7;UBERON:0005057,3.30e-11,7;UBERON:0002193,3.77e-10,108;UBERON:0000945,6.34e-10,8;UBERON:0010039,6.34e-10,8;UBERON:0002371,2.42e-08,76;UBERON:0001474,1.01e-07,82;UBERON:0004765,5.04e-07,90;UBERON:0004457,6.54e-07,12;UBERON:0000042,6.54e-07,12;UBERON:0003887,6.54e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767658796194425,1.23852898652861,0,0,0,0,0,0,0,0.401088894940283,0.217010870715852,0,0,0.257575567634187,0.145398238779565,0,0.485168122375632,0,0,0,0.28769239232215,0.256160706529101,0.236482229888585,0,1.29096936716765,0,0,0,0.224723484445085,0.306083892370903,0.320929027076094,0,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0.217188844705117,0.605399502633369,0,0,1.26753171787165,1.4882300997553,0.628975936525128,0,0.450530678524519,0.16072558669708,3.42015292489498,4.77400025277816,2.73996230646951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0.226618685395132,0.383220493601921,0,0,0,0,0.950452044448374,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.431428401637234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0.569647187174163,0.476463550915578,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0.846694330895531,4.54470716384378,0,0.456469358066384,1.25343916618419,0,0.169291777801603,0,0,0,0.343505344755765,0.307240764308458,0,0,0.390776190804081,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0.104421949505455,0.134802265961354,0,0,0,0,0,0,0,0,0.126373159256976,0,0.103688191397247,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0.199679000498991,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0.732761168390412,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0,0,1.03382309777839,1.93373663920732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0.186224142887574,0,0,0,0.435433495793923,0,0,0,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767658796194425,1.23852898652861,0,0,0,0,0,0,0,0.401088894940283,0.217010870715852,0,0,0.257575567634187,0.145398238779565,0,0.485168122375632,0,0,0,0.28769239232215,0.256160706529101,0.236482229888585,0,1.29096936716765,0,0,0,0.224723484445085,0.306083892370903,0.320929027076094,0,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0.217188844705117,0.605399502633369,0,0,1.26753171787165,1.4882300997553,0.628975936525128,0,0.450530678524519,0.16072558669708,3.42015292489498,4.77400025277816,2.73996230646951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0.226618685395132,0.383220493601921,0,0,0,0,0.950452044448374,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.431428401637234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0.569647187174163,0.476463550915578,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0.846694330895531,4.54470716384378,0,0.456469358066384,1.25343916618419,0,0.169291777801603,0,0,0,0.343505344755765,0.307240764308458,0,0,0.390776190804081,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0.104421949505455,0.134802265961354,0,0,0,0,0,0,0,0,0.126373159256976,0,0.103688191397247,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0.199679000498991,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0.732761168390412,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0,0,1.03382309777839,1.93373663920732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0.186224142887574,0,0,0,0.435433495793923,0,0,0,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | ||
|short_description=p13@TMC6 | |short_description=p13@TMC6 | ||
}} | }} |
Latest revision as of 20:18, 17 September 2015
Short description: | p13@TMC6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_TMC6_5end |
Coexpression cluster: | C92_CD14CD16_CD14_Eosinophils_Basophils_Neutrophils_Macrophage_Whole |
Association with transcript: | -91bp_to_uc002juj.1_5end |
EntrezGene: | TMC6 |
HGNC: | 18021 |
UniProt: | Q7Z403 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
non-classical monocyte | 3.47e-55 | 3 |
CD14-low, CD16-positive monocyte | 3.47e-55 | 3 |
intermediate monocyte | 3.06e-50 | 9 |
CD14-positive, CD16-positive monocyte | 3.06e-50 | 9 |
classical monocyte | 2.03e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.03e-15 | 42 |
defensive cell | 1.76e-13 | 48 |
phagocyte | 1.76e-13 | 48 |
myeloid cell | 7.17e-13 | 108 |
common myeloid progenitor | 7.17e-13 | 108 |
myeloid leukocyte | 7.93e-12 | 72 |
monopoietic cell | 9.31e-11 | 59 |
monocyte | 9.31e-11 | 59 |
monoblast | 9.31e-11 | 59 |
promonocyte | 9.31e-11 | 59 |
macrophage dendritic cell progenitor | 2.10e-10 | 61 |
myeloid lineage restricted progenitor cell | 1.29e-09 | 66 |
granulocyte monocyte progenitor cell | 1.80e-09 | 67 |
hematopoietic oligopotent progenitor cell | 1.89e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.89e-08 | 161 |
hematopoietic stem cell | 4.52e-08 | 168 |
hematopoietic cell | 1.26e-07 | 177 |
basophil | 3.16e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
spleen | 8.95e-25 | 3 |
gastrointestinal system mesentery | 8.95e-25 | 3 |
stomach region | 8.95e-25 | 3 |
mesentery | 8.95e-25 | 3 |
gastrointestinal system serosa | 8.95e-25 | 3 |
mesentery of stomach | 8.95e-25 | 3 |
gut mesentery | 8.95e-25 | 3 |
dorsal mesentery | 8.95e-25 | 3 |
dorsal mesogastrium | 8.95e-25 | 3 |
peritoneal cavity | 8.95e-25 | 3 |
spleen primordium | 8.95e-25 | 3 |
immune system | 7.54e-12 | 93 |
hematopoietic system | 3.17e-11 | 98 |
blood island | 3.17e-11 | 98 |
hemopoietic organ | 3.30e-11 | 7 |
immune organ | 3.30e-11 | 7 |
hemolymphoid system | 3.77e-10 | 108 |
stomach | 6.34e-10 | 8 |
food storage organ | 6.34e-10 | 8 |
bone marrow | 2.42e-08 | 76 |
bone element | 1.01e-07 | 82 |
skeletal element | 5.04e-07 | 90 |
cavity lining | 6.54e-07 | 12 |
serous membrane | 6.54e-07 | 12 |
intraembryonic coelom | 6.54e-07 | 12 |