FFCP PHASE1:Hg19::chr4:4861385..4861398,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=4487 | |EntrezGene=4487 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=7391 | |HGNC=7391 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=P28360 | |UniProt=P28360 | ||
|association_with_transcript=0bp_to_ENST00000382723,NM_002448,uc003gif.2_5end | |association_with_transcript=0bp_to_ENST00000382723,NM_002448,uc003gif.2_5end | ||
|cluster_id=chr4:4861385..4861398,+ | |||
|description=CAGE_peak_1_at_MSX1_5end | |description=CAGE_peak_1_at_MSX1_5end | ||
|id=chr4:4861385..4861398,+ | |id=chr4:4861385..4861398,+ | ||
Latest revision as of 22:54, 17 September 2015
| Short description: | p1@MSX1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_MSX1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENST00000382723, NM_002448, uc003gif.2_5end |
| EntrezGene: | MSX1 |
| HGNC: | 7391 |
| UniProt: | P28360 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@MSX1 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| fibroblast | 1.28e-16 | 76 |
| fat cell | 1.30e-07 | 15 |
| skin fibroblast | 1.36e-07 | 23 |
| preadipocyte | 5.24e-07 | 12 |
Showing 1 to 4 of 4 entries
| Ontology term | p-value | n |
|---|---|---|
| structure with developmental contribution from neural crest | 4.84e-10 | 132 |
| anatomical conduit | 1.27e-07 | 240 |
| integument | 5.39e-07 | 46 |
| integumental system | 5.39e-07 | 46 |
| vessel | 6.28e-07 | 68 |
| surface structure | 8.95e-07 | 99 |
Showing 1 to 6 of 6 entries
