FFCP PHASE1:Hg19::chr10:33246856..33246867,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:33246856..33246867,- to FFCP PHASE1:Hg19::chr10:33246856..33246867,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3688 | |EntrezGene=3688 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6153 | |HGNC=6153 | ||
|TSSclassifier=strong | |||
|UniProt=P05556 | |UniProt=P05556 | ||
|association_with_transcript=-34bp_to_ENST00000396033,NM_133376,uc001iws.3_5end | |||
|cluster_id=chr10:33246856..33246867,- | |||
|coexpression_cluster_id=C2058 | |||
|description=CAGE_peak_8_at_ITGB1_5end | |||
|id=chr10:33246856..33246867,- | |||
|ontology_enrichment_celltype=CL:0000548!1.98e-20!679;CL:0000004!1.98e-20!679;CL:0000255!1.98e-20!679;CL:0000220!7.05e-20!246;CL:0002321!9.36e-20!248;CL:0000012!1.58e-19!682;CL:0000359!5.87e-16!32;CL:0000144!1.53e-15!625;CL:0000055!2.47e-15!180;CL:0002371!4.74e-15!591;CL:0000680!1.20e-14!57;CL:0000056!1.20e-14!57;CL:0000355!1.20e-14!57;CL:0000192!1.57e-14!42;CL:0000514!1.57e-14!42;CL:0000222!6.34e-14!119;CL:0000187!1.54e-13!54;CL:0000183!1.75e-13!59;CL:0000066!1.96e-12!254;CL:0000393!6.05e-12!60;CL:0000211!6.05e-12!60;CL:0000003!8.89e-12!722;CL:0000063!6.64e-08!578;CL:0002076!7.30e-08!43;CL:0000057!1.55e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.12e-18;32!CL:0000192;2.47e-10;43!CL:0002368;5.97e-08;13!CL:0002539;9.35e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.43e-19,32;CL:0002321,4.82e-14,250;CL:0000192,6.85e-14,43;CL:0000514,6.85e-14,43;CL:0000680,3.97e-12,58;CL:0000056,3.97e-12,58;CL:0000355,3.97e-12,58;CL:0000187,7.35e-11,55;CL:0000222,4.25e-10,121;CL:0000393,1.07e-09,61;CL:0000211,1.07e-09,61;CL:0000057,2.24e-08,76;CL:0000066,6.40e-08,253;CL:0002368,6.70e-08,13;CL:0002076,4.04e-07,42;CL:0002539,8.12e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000514;2.47e-10;43 | |||
|ontology_enrichment_disease=DOID:2394!6.13e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.01e-09;14!DOID:120;9.20e-07;27 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,7.32e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0003914!1.41e-17!118;UBERON:0002100!5.37e-17!216;UBERON:0001637!7.74e-17!42;UBERON:0003509!7.74e-17!42;UBERON:0004572!7.74e-17!42;UBERON:0005256!8.07e-17!143;UBERON:0004573!4.56e-15!33;UBERON:0004571!4.56e-15!33;UBERON:0000486!4.74e-15!82;UBERON:0000914!5.14e-15!83;UBERON:0002329!5.14e-15!83;UBERON:0003077!5.14e-15!83;UBERON:0003059!5.14e-15!83;UBERON:0007282!5.14e-15!83;UBERON:0009618!5.14e-15!83;UBERON:0007285!5.14e-15!83;UBERON:0002049!1.27e-14!79;UBERON:0007798!1.27e-14!79;UBERON:0001981!1.77e-14!60;UBERON:0007500!1.77e-14!60;UBERON:0004537!1.77e-14!60;UBERON:0006965!1.77e-14!60;UBERON:0004872!2.38e-14!84;UBERON:0000490!4.36e-14!138;UBERON:0003104!1.89e-13!238;UBERON:0009142!1.89e-13!238;UBERON:0000055!2.55e-13!69;UBERON:0004290!2.82e-13!70;UBERON:0000926!1.60e-12!448;UBERON:0004120!1.60e-12!448;UBERON:0006603!1.60e-12!448;UBERON:0001134!5.85e-12!61;UBERON:0002036!5.85e-12!61;UBERON:0003082!5.85e-12!61;UBERON:0002385!1.38e-11!63;UBERON:0001015!1.38e-11!63;UBERON:0000383!1.38e-11!63;UBERON:0004535!1.38e-11!110;UBERON:0001009!1.33e-10!113;UBERON:0000467!1.12e-09!625;UBERON:0000480!1.80e-09!626;UBERON:0000947!1.51e-08!21;UBERON:0010191!1.51e-08!21;UBERON:0000468!1.95e-08!659;UBERON:0000481!7.96e-08!347;UBERON:0000475!8.54e-08!365;UBERON:0003102!2.70e-07!95;UBERON:0000119!6.03e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.94e-15;33!UBERON:0004571;1.94e-15;33!UBERON:0001637;1.34e-13;42!UBERON:0003509;1.34e-13;42!UBERON:0004572;1.34e-13;42!UBERON:0003914;2.85e-10;74!UBERON:0007500;4.17e-09;56!UBERON:0001981;4.17e-09;56!UBERON:0004537;4.17e-09;56!UBERON:0000947;1.21e-08;21!UBERON:0010191;1.21e-08;21!UBERON:0000055;9.92e-08;65!UBERON:0000992;9.23e-07;13!UBERON:0004237;9.35e-07;10!UBERON:0004695;9.35e-07;10!UBERON:0002111;9.35e-07;10!UBERON:0004178;9.35e-07;10 | |||
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|phase1_expression=1.2717486548939,2.14100523890983,2.67813367782345,2.00146596706261,0.446961094427288,0.872338524100369,2.53299878168311,3.15859936713415,0,3.19454117451962,1.39560233594486,0.873765488520689,2.11013582582763,0.495065411840187,1.32558950291166,0.672325146451775,6.02694528023977,6.57279081348636,8.29485757943862,0.246242116153576,0.408001382488506,0.313454721478088,0.286235987131057,0.273748850145768,0.627713197974014,0,0,0,0,0.767658796194425,0.309632246632152,9.19421224478927,1.50602959389125,5.54631015250181,0,0,0,1.66198622559563,0.401088894940283,0.434021741431704,0,0,0,0.145398238779565,0.377875943688809,0.242584061187816,0.232429036905685,0.411167888021826,0.309706370895104,1.7261543539329,1.0246428261164,0.236482229888585,2.06847408441971,0.645484683583826,2.70852973188684,0.188242339542605,0.545812300115692,0.224723484445085,1.53041946185451,0.641858054152187,0,0.659702600373432,0.199463657621632,0,0.580418477257168,0,0.622822248995575,1.00499466102697,0.521482918420201,1.08594422352558,0,1.10483290796269,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0.800791974072025,0,0,0,0,0,0,0,0,0,0,0.786021525498329,0.205601498999509,0,0,0,0,0.557052284425868,0.294605907474837,0.221533894583621,0.541607727530031,0,0.130059347559878,0,0,0,0,0,0,0,0,0.68725489096526,0.253019692019503,0.318565414324097,0,0,0,0.127986611154418,0,0,0,0.201606743224732,0,0,2.43806866313962,1.34140171940727,0,1.0843174571537,1.00267582127178,0.724232594804119,2.3858578411533,0,0.850813354476611,2.21729397462564,1.22968699970376,0,1.45718115317017,1.11235332835329,1.9472843619281,0.870648686496336,1.46253756570752,0.238490624305342,0,0,0.993812036833525,1.72046919021225,1.04142150482278,2.82653970962005,0,2.20094433552054,2.29894463190492,2.06733407335463,2.49036383880697,2.67776490211736,0.805658634218294,3.80136052859256,0.488124115096339,1.47065232138347,2.43042584364528,1.42879565254528,2.2452937262617,2.36484109014977,0,0,2.5648244150257,0,0,2.61656431285521,5.96366342034382,3.16576279161449,11.3871895499368,4.01571269048339,4.25602058638028,1.12135520028461,6.4049397437823,3.20667812942308,0.622422070799533,4.17603083416033,2.28846664358842,0.302714855289863,0,0,4.68240115245481,0,1.94283284717341,1.05691048779388,1.78060238804945,0.98315564691574,3.26646674007829,1.10550885580591,0.929932030581889,0,1.48360157567134,0,0,0.673344455816265,0.625592599359821,3.60183350129438,2.63386572528503,1.5324389789951,1.20190447125277,0.907457465280168,2.33206526395521,0.427114777637135,1.05965950579781,2.70081986475962,2.26715564324566,1.54584324027377,2.60563598864226,3.71307930930786,3.89748020644795,2.27190396819703,1.19664868234989,1.2931684545505,1.42003837006646,1.71278566986988,1.01736355386293,9.85630351132814,11.4553370648151,11.4721838155602,0.487894824518382,0.265059536642971,0.69716365721711,1.65857688024593,0.504641701751257,0.36497735907583,1.56449532329816,5.14592750554308,2.76269842704961,1.39310378409594,2.16563844500876,0.709840800239063,1.01150814046861,1.44606617930089,1.10293972732394,1.52515610864684,0.949082476444386,0.943819157121151,0.784885860501384,0.769494313892781,3.69077727312324,0,0.8231480226628,1.47008711385542,0,0,0.590789906681404,0,0.368965315629341,2.40194934417936,5.92651541206578,0,4.2222168412885,3.88871469665824,0,0,4.3299402607582,0.811512834825538,5.28339124061197,0.866198686566443,0.925971025153221,0.570762456703795,0,0,0.246217006087397,0,0.297262324577456,11.2480600784132,10.2469098201304,5.38745369521069,4.38836761243957,4.65014301622339,0.766765358330422,0,0,0,0,0,0.317489471460845,0,0,0,0.205654985406647,0.901029173531752,0,0.672786506072164,2.1798003441664,2.0534720029866,8.14411809274,0,0,3.45719551560332,2.08014873822732,0.257207374262142,0,0.266422179016099,3.57444984145369,0,0,0.977208552881205,1.77695974371273,0,10.5503781970855,21.7883364650074,10.0972721093878,0,0,0,2.39624855491583,0,5.70547620162874,7.23906533337896,2.05476322550383,3.04403637507822,0,0.394061520403854,0.215627574859517,0.256686072559497,0,0,0,0,0,0,0,0,1.10422342547226,1.00034104211935,0.542530047399471,3.11956292296211,5.88815663030634,4.41566762095017,2.81139395982512,1.50473049863859,0,0,1.99267679560631,4.42486004500088,0.955719759148911,0.391602314925481,0,0.206768026122887,0,0.320182673410333,0,0,0.30239029332968,1.98486246255021,1.2276957863045,3.08726103876381,2.17836553734692,6.14048698880044,3.86049410744658,0,1.23367755042124,4.43904313282818,4.18848495670427,4.15403543346897,3.1376802184189,0.120859449591622,20.2511535006318,1.56537681191024,1.95184561879831,1.0925470080403,0.786746489756545,1.80479845162965,10.7821471946181,1.56869953835371,1.46139224653261,20.7936708918965,0,1.36074964221213,2.15915916102139,1.54227252690289,2.43851793789468,4.01351819083883,1.01950509218015,0,2.0148727924996,0,0,0,0,0,0.103041011647722,0.27470839445503,0.082509499920588,6.89118645595407,7.80072295243825,3.21367859688319,0.96670718292122,0.616194468458578,0.767518373630648,0.551346289938122,0.537101224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| ||
|short_description=p8@ITGB1 | |||
}} | }} |
Latest revision as of 00:36, 18 September 2015
Short description: | p8@ITGB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_ITGB1_5end |
Coexpression cluster: | C2058_Smooth_basal_mesenchymal_tubular_Renal_lung_Urothelial |
Association with transcript: | -34bp_to_ENST00000396033, NM_133376, uc001iws.3_5end |
EntrezGene: | ITGB1 |
HGNC: | 6153 |
UniProt: | P05556 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 1.43e-19 | 32 |
embryonic cell | 4.82e-14 | 250 |
smooth muscle cell | 6.85e-14 | 43 |
smooth muscle myoblast | 6.85e-14 | 43 |
muscle precursor cell | 3.97e-12 | 58 |
myoblast | 3.97e-12 | 58 |
multi-potent skeletal muscle stem cell | 3.97e-12 | 58 |
muscle cell | 7.35e-11 | 55 |
mesodermal cell | 4.25e-10 | 121 |
electrically responsive cell | 1.07e-09 | 61 |
electrically active cell | 1.07e-09 | 61 |
fibroblast | 2.24e-08 | 76 |
epithelial cell | 6.40e-08 | 253 |
respiratory epithelial cell | 6.70e-08 | 13 |
endo-epithelial cell | 4.04e-07 | 42 |
aortic smooth muscle cell | 8.12e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 7.32e-10 | 14 |