FFCP PHASE1:Hg19::chr1:40781100..40781107,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1298 | |EntrezGene=1298 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2218 | |HGNC=2218 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=2bp_to_ENST00000488463_5end | |association_with_transcript=2bp_to_ENST00000488463_5end | ||
|cluster_id=chr1:40781100..40781107,- | |||
|coexpression_cluster_id=C21 | |coexpression_cluster_id=C21 | ||
|description=CAGE_peak_20_at_COL9A2_5end | |description=CAGE_peak_20_at_COL9A2_5end | ||
|id=chr1:40781100..40781107,- | |id=chr1:40781100..40781107,- | ||
|ontology_enrichment_celltype=CL:0000242!5.39e-11!2;CL:0000080!2.91e-08!6 | |ontology_enrichment_celltype=CL:0000242!5.39e-11!2;CL:0000080!2.91e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0002188;3.35e-09;5!CL:1000746;6.21e-07;7!CL:1000612;6.21e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002188,3.22e-09,5;CL:1000746,6.04e-07,7;CL:1000612,6.04e-07,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002616!4.69e-12!59;UBERON:0005743!2.63e-11!86;UBERON:0001049!1.15e-10!57;UBERON:0005068!1.15e-10!57;UBERON:0006241!1.15e-10!57;UBERON:0007135!1.15e-10!57;UBERON:0001017!1.73e-10!82;UBERON:0000073!6.44e-10!94;UBERON:0001016!6.44e-10!94;UBERON:0003075!6.90e-10!86;UBERON:0007284!6.90e-10!86;UBERON:0000955!9.81e-10!69;UBERON:0006238!9.81e-10!69;UBERON:0002346!2.64e-09!90;UBERON:0002680!1.83e-08!9;UBERON:0001895!1.83e-08!9;UBERON:0010092!1.83e-08!9;UBERON:0000033!6.28e-08!123;UBERON:0000153!2.15e-07!129;UBERON:0007811!2.15e-07!129;UBERON:0002791!2.36e-07!33;UBERON:0002780!2.46e-07!41;UBERON:0001890!2.46e-07!41;UBERON:0006240!2.46e-07!41;UBERON:0000988!3.28e-07!3;UBERON:0002020!3.31e-07!34;UBERON:0003528!3.31e-07!34;UBERON:0004121!3.68e-07!169;UBERON:0003080!3.94e-07!42;UBERON:0001893!4.14e-07!34;UBERON:0000924!6.73e-07!173;UBERON:0006601!6.73e-07!173;UBERON:0003056!8.25e-07!61 | |ontology_enrichment_uberon=UBERON:0002616!4.69e-12!59;UBERON:0005743!2.63e-11!86;UBERON:0001049!1.15e-10!57;UBERON:0005068!1.15e-10!57;UBERON:0006241!1.15e-10!57;UBERON:0007135!1.15e-10!57;UBERON:0001017!1.73e-10!82;UBERON:0000073!6.44e-10!94;UBERON:0001016!6.44e-10!94;UBERON:0003075!6.90e-10!86;UBERON:0007284!6.90e-10!86;UBERON:0000955!9.81e-10!69;UBERON:0006238!9.81e-10!69;UBERON:0002346!2.64e-09!90;UBERON:0002680!1.83e-08!9;UBERON:0001895!1.83e-08!9;UBERON:0010092!1.83e-08!9;UBERON:0000033!6.28e-08!123;UBERON:0000153!2.15e-07!129;UBERON:0007811!2.15e-07!129;UBERON:0002791!2.36e-07!33;UBERON:0002780!2.46e-07!41;UBERON:0001890!2.46e-07!41;UBERON:0006240!2.46e-07!41;UBERON:0000988!3.28e-07!3;UBERON:0002020!3.31e-07!34;UBERON:0003528!3.31e-07!34;UBERON:0004121!3.68e-07!169;UBERON:0003080!3.94e-07!42;UBERON:0001893!4.14e-07!34;UBERON:0000924!6.73e-07!173;UBERON:0006601!6.73e-07!173;UBERON:0003056!8.25e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0002331;2.40e-36;10!UBERON:0000178;1.40e-24;15!UBERON:0000179;1.40e-24;15!UBERON:0000463;1.40e-24;15!UBERON:0000478;1.02e-15;24!UBERON:0002390;4.18e-12;32!UBERON:0000922;5.91e-08;49!UBERON:0000074;6.21e-07;7!UBERON:0001229;6.21e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,2.40e-36,10;UBERON:0000358,2.40e-36,10;UBERON:0000307,2.40e-36,10;UBERON:0000091,2.40e-36,10;UBERON:0000087,2.40e-36,10;UBERON:0007010,2.40e-36,10;UBERON:0007806,2.40e-36,10;UBERON:0008780,2.40e-36,10;UBERON:0005728,2.40e-36,10;UBERON:0000178,1.40e-24,15;UBERON:0000179,1.40e-24,15;UBERON:0000463,1.40e-24,15;UBERON:0000478,1.02e-15,24;UBERON:0002390,4.61e-07,98;UBERON:0003061,4.61e-07,98;UBERON:0010532,6.04e-07,7;UBERON:0000074,6.04e-07,7;UBERON:0001229,6.04e-07,7;UBERON:0001230,6.04e-07,7;UBERON:0003220,6.04e-07,7;UBERON:0005749,6.04e-07,7;UBERON:0004199,6.04e-07,7;UBERON:0004209,6.04e-07,7;UBERON:0004198,6.04e-07,7 | |||
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|short_description=p20@COL9A2 | |short_description=p20@COL9A2 | ||
}} | }} |
Latest revision as of 01:07, 18 September 2015
Short description: | p20@COL9A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_COL9A2_5end |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | 2bp_to_ENST00000488463_5end |
EntrezGene: | COL9A2 |
HGNC: | 2218 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glomerular endothelial cell | 3.22e-09 | 5 |
glomerular cell | 6.04e-07 | 7 |
kidney corpuscule cell | 6.04e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 2.40e-36 | 10 |
blastocyst | 2.40e-36 | 10 |
blastula | 2.40e-36 | 10 |
bilaminar disc | 2.40e-36 | 10 |
inner cell mass | 2.40e-36 | 10 |
cleaving embryo | 2.40e-36 | 10 |
connecting stalk | 2.40e-36 | 10 |
inner cell mass derived epiblast | 2.40e-36 | 10 |
extraembryonic mesoderm | 2.40e-36 | 10 |
blood | 1.40e-24 | 15 |
haemolymphatic fluid | 1.40e-24 | 15 |
organism substance | 1.40e-24 | 15 |
extraembryonic structure | 1.02e-15 | 24 |
hematopoietic system | 4.61e-07 | 98 |
blood island | 4.61e-07 | 98 |
primitive nephron | 6.04e-07 | 7 |
renal glomerulus | 6.04e-07 | 7 |
renal corpuscle | 6.04e-07 | 7 |
glomerular capsule | 6.04e-07 | 7 |
metanephric mesenchyme | 6.04e-07 | 7 |
glomerular tuft | 6.04e-07 | 7 |
S-shaped body | 6.04e-07 | 7 |
renal vesicle | 6.04e-07 | 7 |
comma-shaped body | 6.04e-07 | 7 |