FFCP PHASE1:Hg19::chr5:52095914..52095954,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=53918 | |EntrezGene=53918 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=8829 | |HGNC=8829 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BRX2 | |UniProt=Q9BRX2 | ||
|association_with_transcript=0bp_to_AK025729,BC007650_5end | |association_with_transcript=0bp_to_AK025729,BC007650_5end | ||
|cluster_id=chr5:52095914..52095954,+ | |||
|description=CAGE_peak_1_at_PELO_5end | |description=CAGE_peak_1_at_PELO_5end | ||
|id=chr5:52095914..52095954,+ | |id=chr5:52095914..52095954,+ | ||
|ontology_enrichment_celltype=CL:0000055!7.45e-18!180;CL:0000393!1.65e-09!60;CL:0000211!1.65e-09!60;CL:0000057!1.69e-09!75;CL:0000183!2.31e-09!59;CL:0000680!6.63e-09!57;CL:0000056!6.63e-09!57;CL:0000355!6.63e-09!57;CL:0002321!1.22e-08!248;CL:0000187!2.17e-08!54;CL:0000192!2.55e-08!42;CL:0000514!2.55e-08!42;CL:0000220!3.37e-08!246;CL:0000359!9.65e-07!32 | |ontology_enrichment_celltype=CL:0000055!7.45e-18!180;CL:0000393!1.65e-09!60;CL:0000211!1.65e-09!60;CL:0000057!1.69e-09!75;CL:0000183!2.31e-09!59;CL:0000680!6.63e-09!57;CL:0000056!6.63e-09!57;CL:0000355!6.63e-09!57;CL:0002321!1.22e-08!248;CL:0000187!2.17e-08!54;CL:0000192!2.55e-08!42;CL:0000514!2.55e-08!42;CL:0000220!3.37e-08!246;CL:0000359!9.65e-07!32 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,2.23e-09,61;CL:0000211,2.23e-09,61;CL:0000057,3.53e-09,76;CL:0000680,8.90e-09,58;CL:0000056,8.90e-09,58;CL:0000355,8.90e-09,58;CL:0002321,1.36e-08,250;CL:0000187,2.89e-08,55;CL:0000192,3.69e-08,43;CL:0000514,3.69e-08,43;CL:0000359,9.65e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.47e-20!365;UBERON:0000481!4.63e-13!347;UBERON:0002100!5.11e-11!216;UBERON:0000483!6.92e-11!309;UBERON:0000119!1.00e-10!312;UBERON:0000914!7.98e-10!83;UBERON:0002329!7.98e-10!83;UBERON:0003077!7.98e-10!83;UBERON:0003059!7.98e-10!83;UBERON:0007282!7.98e-10!83;UBERON:0009618!7.98e-10!83;UBERON:0007285!7.98e-10!83;UBERON:0000486!1.50e-09!82;UBERON:0005256!3.62e-09!143;UBERON:0004290!7.60e-09!70;UBERON:0001134!9.14e-08!61;UBERON:0002036!9.14e-08!61;UBERON:0003082!9.14e-08!61;UBERON:0002385!7.03e-07!63;UBERON:0001015!7.03e-07!63;UBERON:0000383!7.03e-07!63;UBERON:0000468!8.67e-07!659 | |ontology_enrichment_uberon=UBERON:0000475!2.47e-20!365;UBERON:0000481!4.63e-13!347;UBERON:0002100!5.11e-11!216;UBERON:0000483!6.92e-11!309;UBERON:0000119!1.00e-10!312;UBERON:0000914!7.98e-10!83;UBERON:0002329!7.98e-10!83;UBERON:0003077!7.98e-10!83;UBERON:0003059!7.98e-10!83;UBERON:0007282!7.98e-10!83;UBERON:0009618!7.98e-10!83;UBERON:0007285!7.98e-10!83;UBERON:0000486!1.50e-09!82;UBERON:0005256!3.62e-09!143;UBERON:0004290!7.60e-09!70;UBERON:0001134!9.14e-08!61;UBERON:0002036!9.14e-08!61;UBERON:0003082!9.14e-08!61;UBERON:0002385!7.03e-07!63;UBERON:0001015!7.03e-07!63;UBERON:0000383!7.03e-07!63;UBERON:0000468!8.67e-07!659 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000483,2.46e-11,306;UBERON:0000119,3.61e-11,309;UBERON:0002100,1.67e-09,199;UBERON:0000486,1.87e-09,83;UBERON:0007524,5.10e-09,73;UBERON:0003077,5.15e-09,72;UBERON:0007285,5.15e-09,72;UBERON:0002329,9.64e-09,71;UBERON:0003059,9.64e-09,71;UBERON:0007282,9.64e-09,71;UBERON:0004290,9.64e-09,71;UBERON:0009618,9.64e-09,71;UBERON:0007503,1.94e-08,78;UBERON:0003104,4.77e-08,160;UBERON:0009142,4.77e-08,160;UBERON:0001134,1.16e-07,62;UBERON:0002036,1.16e-07,62;UBERON:0003082,1.16e-07,62;UBERON:0010314,1.33e-07,132;UBERON:0003102,2.21e-07,99;UBERON:0002385,8.56e-07,64;UBERON:0001015,8.56e-07,64;UBERON:0000383,8.56e-07,64 | |||
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| ||
|short_description=p1@PELO | |short_description=p1@PELO | ||
}} | }} |
Latest revision as of 02:23, 18 September 2015
Short description: | p1@PELO |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PELO_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_AK025729, BC007650_5end |
EntrezGene: | PELO |
HGNC: | 8829 |
UniProt: | Q9BRX2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 2.23e-09 | 61 |
electrically active cell | 2.23e-09 | 61 |
fibroblast | 3.53e-09 | 76 |
muscle precursor cell | 8.90e-09 | 58 |
myoblast | 8.90e-09 | 58 |
multi-potent skeletal muscle stem cell | 8.90e-09 | 58 |
embryonic cell | 1.36e-08 | 250 |
muscle cell | 2.89e-08 | 55 |
smooth muscle cell | 3.69e-08 | 43 |
smooth muscle myoblast | 3.69e-08 | 43 |
vascular associated smooth muscle cell | 9.65e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
epithelium | 2.46e-11 | 306 |
cell layer | 3.61e-11 | 309 |
trunk | 1.67e-09 | 199 |
multilaminar epithelium | 1.87e-09 | 83 |
dense mesenchyme tissue | 5.10e-09 | 73 |
paraxial mesoderm | 5.15e-09 | 72 |
presumptive paraxial mesoderm | 5.15e-09 | 72 |
somite | 9.64e-09 | 71 |
presomitic mesoderm | 9.64e-09 | 71 |
presumptive segmental plate | 9.64e-09 | 71 |
dermomyotome | 9.64e-09 | 71 |
trunk paraxial mesoderm | 9.64e-09 | 71 |
epithelial vesicle | 1.94e-08 | 78 |
mesenchyme | 4.77e-08 | 160 |
entire embryonic mesenchyme | 4.77e-08 | 160 |
skeletal muscle tissue | 1.16e-07 | 62 |
striated muscle tissue | 1.16e-07 | 62 |
myotome | 1.16e-07 | 62 |
structure with developmental contribution from neural crest | 1.33e-07 | 132 |
surface structure | 2.21e-07 | 99 |
muscle tissue | 8.56e-07 | 64 |
musculature | 8.56e-07 | 64 |
musculature of body | 8.56e-07 | 64 |