FFCP PHASE1:Hg19::chr2:176995011..176995029,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3234 | |EntrezGene=3234 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5139 | |HGNC=5139 | ||
|TSSclassifier=strong | |||
|UniProt=F8VSA3 | |UniProt=F8VSA3 | ||
|association_with_transcript=-23bp_to_ENST00000548663_5end | |association_with_transcript=-23bp_to_ENST00000548663_5end | ||
|cluster_id=chr2:176995011..176995029,+ | |||
|description=CAGE_peak_6_at_HOXD8_5end | |description=CAGE_peak_6_at_HOXD8_5end | ||
|id=chr2:176995011..176995029,+ | |id=chr2:176995011..176995029,+ | ||
|ontology_enrichment_celltype=CL:0000228;2.71e-19;1!CL:0000222;2.71e-19;1!CL:0002372;2.71e-19;1 | |ontology_enrichment_celltype=CL:0002620!3.51e-09!23;CL:0000667!1.66e-08!6;CL:0000058!1.66e-08!6;CL:0000138!1.66e-08!6;CL:0002681!4.24e-07!13;CL:0002584!4.24e-07!13;CL:0000153!4.54e-07!9;CL:0000447!4.54e-07!9;CL:1000497!6.92e-07!18;CL:0002518!6.92e-07!18 | ||
| | |ontology_enrichment_celltype_v019=CL:0000228;2.71e-19;1!CL:0000222;2.71e-19;1!CL:0002372;2.71e-19;1 | ||
|ontology_enrichment_disease=DOID:1909;2.48e-10;2 | |ontology_enrichment_celltype_v019_2=CL:0000228,3.25e-19,1;CL:0002372,3.25e-19,1 | ||
|ontology_enrichment_uberon=UBERON:0001301;2.71e-19;1!UBERON:0003135;1.76e-15;11!UBERON:0000473;4.41e-10;8!UBERON:0000991;2.10e-08;21!UBERON:0003101;4.77e-08;22!UBERON:0000079;4.77e-08;22!UBERON:0006947;2.63e-07;3!UBERON:0004054;2.63e-07;3 | |ontology_enrichment_development_v019=UBERON:0007297;2.48e-10;2!UBERON:0009117;3.03e-08;10!UBERON:0005564;3.03e-08;10 | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;2.48e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,3.58e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0002113!6.11e-09!27;UBERON:0003918!6.11e-09!27;UBERON:0005095!6.11e-09!27;UBERON:0007687!6.11e-09!27;UBERON:0001851!3.18e-08!16;UBERON:0002097!4.42e-08!40;UBERON:0000489!5.55e-08!32;UBERON:0006555!1.61e-07!17;UBERON:0005103!1.61e-07!17;UBERON:0000083!1.61e-07!17;UBERON:0009201!1.61e-07!17;UBERON:0004819!1.61e-07!17;UBERON:0006553!1.61e-07!17;UBERON:0003074!1.61e-07!17;UBERON:0003060!1.61e-07!17;UBERON:0002199!2.19e-07!45;UBERON:0002416!2.19e-07!45;UBERON:0001225!4.24e-07!13;UBERON:0008987!4.24e-07!13;UBERON:0000080!5.99e-07!18;UBERON:0002120!5.99e-07!18;UBERON:0004875!5.99e-07!18;UBERON:0005721!5.99e-07!18;UBERON:0005754!5.99e-07!18;UBERON:0007297!5.99e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0001301;2.71e-19;1!UBERON:0003135;1.76e-15;11!UBERON:0000473;4.41e-10;8!UBERON:0000991;2.10e-08;21!UBERON:0003101;4.77e-08;22!UBERON:0000079;4.77e-08;22!UBERON:0006947;2.63e-07;3!UBERON:0004054;2.63e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001301,1.56e-19,1;UBERON:0003135,1.25e-15,11;UBERON:0000473,3.68e-10,8;UBERON:0005103,5.06e-10,8;UBERON:0000083,5.06e-10,8;UBERON:0009201,5.06e-10,8;UBERON:0006553,5.06e-10,8;UBERON:0003074,5.06e-10,8;UBERON:0003060,5.06e-10,8;UBERON:0000080,5.20e-09,9;UBERON:0002120,5.20e-09,9;UBERON:0004875,5.20e-09,9;UBERON:0005721,5.20e-09,9;UBERON:0005754,5.20e-09,9;UBERON:0007297,5.20e-09,9;UBERON:0003886,1.64e-08,54;UBERON:0000991,1.80e-08,21;UBERON:0009196,1.80e-08,21;UBERON:0009117,1.80e-08,21;UBERON:0005564,1.80e-08,21;UBERON:0003101,4.03e-08,22;UBERON:0000079,4.03e-08,22;UBERON:0004176,4.13e-08,22;UBERON:0002553,1.55e-07,61;UBERON:0004876,1.56e-07,11;UBERON:0006947,2.19e-07,3;UBERON:0004054,2.19e-07,3;UBERON:0003887,5.64e-07,12 | |||
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| ||
|short_description=p6@HOXD8 | |short_description=p6@HOXD8 | ||
}} | }} |
Latest revision as of 09:10, 18 September 2015
Short description: | p6@HOXD8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_HOXD8_5end |
Coexpression cluster: | NA |
Association with transcript: | -23bp_to_ENST00000548663_5end |
EntrezGene: | HOXD8 |
HGNC: | 5139 |
UniProt: | F8VSA3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multinucleate cell | 3.25e-19 | 1 |
myotube | 3.25e-19 | 1 |
Ontology term | p-value | n |
---|---|---|
epididymis | 1.56e-19 | 1 |
male reproductive organ | 1.25e-15 | 11 |
testis | 3.68e-10 | 8 |
mesonephric epithelium | 5.06e-10 | 8 |
mesonephric tubule | 5.06e-10 | 8 |
nephric duct | 5.06e-10 | 8 |
renal duct | 5.06e-10 | 8 |
mesonephric duct | 5.06e-10 | 8 |
pronephric duct | 5.06e-10 | 8 |
mesonephros | 5.20e-09 | 9 |
pronephros | 5.20e-09 | 9 |
nephrogenic cord | 5.20e-09 | 9 |
pronephric mesoderm | 5.20e-09 | 9 |
rostral part of nephrogenic cord | 5.20e-09 | 9 |
presumptive pronephric mesoderm | 5.20e-09 | 9 |
body cavity precursor | 1.64e-08 | 54 |
gonad | 1.80e-08 | 21 |
indifferent external genitalia | 1.80e-08 | 21 |
indifferent gonad | 1.80e-08 | 21 |
gonad primordium | 1.80e-08 | 21 |
male organism | 4.03e-08 | 22 |
male reproductive system | 4.03e-08 | 22 |
external genitalia | 4.13e-08 | 22 |
anatomical cavity | 1.55e-07 | 61 |
urogenital ridge | 1.56e-07 | 11 |
male genital duct | 2.19e-07 | 3 |
internal male genitalia | 2.19e-07 | 3 |
intraembryonic coelom | 5.64e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
melanoma | 3.58e-10 | 2 |