FFCP PHASE1:Hg19::chr4:71248840..71248854,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10879 | |EntrezGene=10879 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17326 | |HGNC=17326 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000508027_5end | |association_with_transcript=0bp_to_ENST00000508027_5end | ||
|cluster_id=chr4:71248840..71248854,+ | |||
|coexpression_cluster_id=C37 | |||
|description=CAGE_peak_1_at_SMR3B_5end | |description=CAGE_peak_1_at_SMR3B_5end | ||
|id=chr4:71248840..71248854,+ | |id=chr4:71248840..71248854,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000064;3.19e-08;3!CL:0000067;3.19e-08;3!CL:0005012;3.19e-08;3!CL:0002304;3.19e-08;3!CL:0000342;8.92e-07;1!CL:0002565;8.92e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,3.19e-08,3;CL:0000067,3.19e-08,3;CL:0005012,3.19e-08,3;CL:0002304,3.19e-08,3;CL:0000342,9.73e-07,1;CL:0002565,9.73e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0006298;1.55e-07;1!UBERON:0008801;1.65e-07;1!UBERON:0004874;3.01e-07;1!UBERON:0001045;3.20e-07;1!UBERON:0010115;7.08e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.42e-32!115;UBERON:0000153!5.26e-14!129;UBERON:0007811!5.26e-14!129;UBERON:0000033!7.84e-13!123;UBERON:0002346!6.04e-12!90;UBERON:0003075!1.71e-11!86;UBERON:0007284!1.71e-11!86;UBERON:0006947!1.46e-09!3;UBERON:0004054!1.46e-09!3;UBERON:0000924!3.30e-09!173;UBERON:0006601!3.30e-09!173;UBERON:0003135!6.28e-09!11;UBERON:0004121!8.77e-09!169;UBERON:0000020!1.80e-08!23;UBERON:0003056!2.02e-08!61;UBERON:0001896!4.12e-08!3;UBERON:0005290!4.12e-08!3;UBERON:0010096!4.12e-08!3;UBERON:0001032!4.82e-08!24;UBERON:0004456!4.82e-08!24;UBERON:0000062!7.12e-08!511;UBERON:0001049!7.88e-08!57;UBERON:0005068!7.88e-08!57;UBERON:0006241!7.88e-08!57;UBERON:0007135!7.88e-08!57;UBERON:0002616!1.88e-07!59;UBERON:0001829!2.11e-07!2;UBERON:0001444!2.96e-07!48;UBERON:0005904!2.98e-07!4;UBERON:0000922!3.51e-07!612;UBERON:0003127!4.82e-07!2;UBERON:0000488!5.79e-07!4 | |ontology_enrichment_uberon=UBERON:0007023!9.42e-32!115;UBERON:0000153!5.26e-14!129;UBERON:0007811!5.26e-14!129;UBERON:0000033!7.84e-13!123;UBERON:0002346!6.04e-12!90;UBERON:0003075!1.71e-11!86;UBERON:0007284!1.71e-11!86;UBERON:0006947!1.46e-09!3;UBERON:0004054!1.46e-09!3;UBERON:0000924!3.30e-09!173;UBERON:0006601!3.30e-09!173;UBERON:0003135!6.28e-09!11;UBERON:0004121!8.77e-09!169;UBERON:0000020!1.80e-08!23;UBERON:0003056!2.02e-08!61;UBERON:0001896!4.12e-08!3;UBERON:0005290!4.12e-08!3;UBERON:0010096!4.12e-08!3;UBERON:0001032!4.82e-08!24;UBERON:0004456!4.82e-08!24;UBERON:0000062!7.12e-08!511;UBERON:0001049!7.88e-08!57;UBERON:0005068!7.88e-08!57;UBERON:0006241!7.88e-08!57;UBERON:0007135!7.88e-08!57;UBERON:0002616!1.88e-07!59;UBERON:0001829!2.11e-07!2;UBERON:0001444!2.96e-07!48;UBERON:0005904!2.98e-07!4;UBERON:0000922!3.51e-07!612;UBERON:0003127!4.82e-07!2;UBERON:0000488!5.79e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000020;1.65e-14;23!UBERON:0001032;7.42e-14;24!UBERON:0004456;7.42e-14;24!UBERON:0001829;2.29e-13;2!UBERON:0000488;7.15e-13;4!UBERON:0003127;1.32e-12;2!UBERON:0007625;2.70e-12;11!UBERON:0001044;7.63e-10;6!UBERON:0003293;7.63e-10;6!UBERON:0003294;7.63e-10;6!UBERON:0010047;7.63e-10;6!UBERON:0003408;7.63e-10;6!UBERON:0000167;7.63e-10;6!UBERON:0001801;1.27e-09;14!UBERON:0000970;2.13e-09;20!UBERON:0001456;4.60e-09;21!UBERON:0001723;4.67e-09;3!UBERON:0001033;4.67e-09;3!UBERON:0002104;6.31e-09;21!UBERON:0006947;7.93e-09;3!UBERON:0004054;7.93e-09;3!UBERON:0003135;9.00e-09;11!UBERON:0002203;9.41e-09;6!UBERON:0001768;9.41e-09;6!UBERON:0002200;9.41e-09;6!UBERON:0001778;3.19e-08;3!UBERON:0001775;3.19e-08;3!UBERON:0000153;7.54e-08;54!UBERON:0001444;1.18e-07;48!UBERON:0007811;1.50e-07;52!UBERON:0001736;1.55e-07;1!UBERON:0001831;1.65e-07;1!UBERON:0001567;1.65e-07;1!UBERON:0000033;1.77e-07;50!UBERON:0002372;1.86e-07;1!UBERON:0001961;1.86e-07;1!UBERON:0001744;1.86e-07;1!UBERON:0001042;1.86e-07;1!UBERON:0001735;1.86e-07;1!UBERON:0001000;2.23e-07;1!UBERON:0005352;2.23e-07;1!UBERON:0000165;2.62e-07;28!UBERON:0000989;3.01e-07;1!UBERON:0008811;3.01e-07;1!UBERON:0001154;3.20e-07;1!UBERON:0001153;3.20e-07;1!UBERON:0009854;3.20e-07;1!UBERON:0001041;3.55e-07;14!UBERON:0006834;3.82e-07;1!UBERON:0001301;4.18e-07;1!UBERON:0000019;4.92e-07;19!UBERON:0000047;4.92e-07;19!UBERON:0004088;4.92e-07;19!UBERON:0010230;4.92e-07;19!UBERON:0007190;4.99e-07;1!UBERON:0002363;7.08e-07;1!UBERON:0005904;8.09e-07;4!UBERON:0002506;8.92e-07;1!UBERON:0001769;8.92e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.88e-14,114;UBERON:0000020,7.35e-14,24;UBERON:0001032,7.35e-14,24;UBERON:0004456,7.35e-14,24;UBERON:0001829,2.29e-13,2;UBERON:0000488,7.61e-13,4;UBERON:0003127,1.21e-12,2;UBERON:0007625,2.67e-12,11;UBERON:0001444,2.91e-12,49;UBERON:0000153,4.55e-11,62;UBERON:0007811,4.55e-11,62;UBERON:0000033,1.79e-10,56;UBERON:0001044,7.63e-10,6;UBERON:0003293,7.63e-10,6;UBERON:0003294,7.63e-10,6;UBERON:0010047,7.63e-10,6;UBERON:0000167,7.63e-10,6;UBERON:0001801,1.26e-09,14;UBERON:0000166,1.79e-09,22;UBERON:0001723,4.67e-09,3;UBERON:0001033,4.67e-09,3;UBERON:0010056,4.67e-09,3;UBERON:0000970,6.26e-09,21;UBERON:0002104,6.26e-09,21;UBERON:0006947,8.09e-09,3;UBERON:0004054,8.09e-09,3;UBERON:0003135,9.09e-09,11;UBERON:0002203,9.80e-09,6;UBERON:0001768,9.80e-09,6;UBERON:0002200,9.80e-09,6;UBERON:0001456,1.25e-08,22;UBERON:0001778,3.19e-08,3;UBERON:0001775,3.19e-08,3;UBERON:0001736,1.55e-07,1;UBERON:0006298,1.55e-07,1;UBERON:0001831,1.65e-07,1;UBERON:0001567,1.65e-07,1;UBERON:0008801,1.65e-07,1;UBERON:0002372,1.86e-07,1;UBERON:0001961,1.86e-07,1;UBERON:0001744,1.86e-07,1;UBERON:0001735,1.86e-07,1;UBERON:0001000,2.23e-07,1;UBERON:0005352,2.23e-07,1;UBERON:0000161,2.68e-07,36;UBERON:0000989,3.01e-07,1;UBERON:0008811,3.01e-07,1;UBERON:0006258,3.01e-07,1;UBERON:0005876,3.01e-07,1;UBERON:0004874,3.01e-07,1;UBERON:0001154,3.20e-07,1;UBERON:0001153,3.20e-07,1;UBERON:0001045,3.20e-07,1;UBERON:0006834,3.82e-07,1;UBERON:0001301,4.31e-07,1;UBERON:0000165,4.92e-07,29;UBERON:0000930,4.92e-07,29;UBERON:0007190,5.14e-07,1;UBERON:0002363,7.29e-07,1;UBERON:0007645,7.29e-07,1;UBERON:0007647,7.29e-07,1;UBERON:0010115,7.29e-07,1;UBERON:0005904,8.21e-07,4;UBERON:0002506,9.73e-07,1;UBERON:0001769,9.73e-07,1 | |||
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| ||
|short_description=p1@SMR3B | |short_description=p1@SMR3B | ||
}} | }} |
Latest revision as of 09:53, 18 September 2015
Short description: | p1@SMR3B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SMR3B_5end |
Coexpression cluster: | C37_salivary_submaxillary_parotid_seminal_tongue_ductus_trachea |
Association with transcript: | 0bp_to_ENST00000508027_5end |
EntrezGene: | SMR3B |
HGNC: | 17326 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 3.19e-08 | 3 |
ciliated epithelial cell | 3.19e-08 | 3 |
multi-ciliated epithelial cell | 3.19e-08 | 3 |
non-pigmented ciliary epithelial cell | 3.19e-08 | 3 |
pigment cell (sensu Vertebrata) | 9.73e-07 | 1 |
iris pigment epithelial cell | 9.73e-07 | 1 |