FFCP PHASE1:Hg19::chr1:53018743..53018777,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23318 | |EntrezGene=23318 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28981 | |HGNC=28981 | ||
|TSSclassifier=strong | |||
|UniProt=Q5TAX3,E9PQS7,E9PKY2 | |UniProt=Q5TAX3,E9PQS7,E9PKY2 | ||
|association_with_transcript=0bp_to_ENST00000371544,ENST00000470626,ENST00000528642,NM_001009881,NM_015269,uc001ctx.2,uc001cty.2,uc001ctz.2,uc001cuc.2,uc001cud.2,uc009vze.1_5end | |association_with_transcript=0bp_to_ENST00000371544,ENST00000470626,ENST00000528642,NM_001009881,NM_015269,uc001ctx.2,uc001cty.2,uc001ctz.2,uc001cuc.2,uc001cud.2,uc009vze.1_5end | ||
|cluster_id=chr1:53018743..53018777,- | |||
|coexpression_cluster_id=C986 | |coexpression_cluster_id=C986 | ||
|description=CAGE_peak_1_at_ZCCHC11_5end | |description=CAGE_peak_1_at_ZCCHC11_5end | ||
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|ontology_enrichment_celltype=CL:0000542!5.75e-11!53;CL:0000051!5.75e-11!53;CL:0000838!7.03e-11!52;CL:0000791!1.15e-09!18;CL:0000789!1.15e-09!18;CL:0002420!1.15e-09!18;CL:0002419!1.15e-09!18;CL:0000790!1.15e-09!18;CL:0000037!1.37e-07!172;CL:0000566!1.37e-07!172;CL:0000084!6.18e-07!25;CL:0000827!6.18e-07!25 | |ontology_enrichment_celltype=CL:0000542!5.75e-11!53;CL:0000051!5.75e-11!53;CL:0000838!7.03e-11!52;CL:0000791!1.15e-09!18;CL:0000789!1.15e-09!18;CL:0002420!1.15e-09!18;CL:0002419!1.15e-09!18;CL:0000790!1.15e-09!18;CL:0000037!1.37e-07!172;CL:0000566!1.37e-07!172;CL:0000084!6.18e-07!25;CL:0000827!6.18e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.09e-09;18!CL:0000789;1.09e-09;18!CL:0002419;1.09e-09;18!CL:0000542;3.99e-07;53!CL:0000084;5.47e-07;25 | |ontology_enrichment_celltype_v019=CL:0000791;1.09e-09;18!CL:0000789;1.09e-09;18!CL:0002419;1.09e-09;18!CL:0000542;3.99e-07;53!CL:0000084;5.47e-07;25 | ||
|ontology_enrichment_celltype_v019_2=CL:0000542,5.71e-11,53;CL:0000051,5.71e-11,53;CL:0000838,6.99e-11,52;CL:0000791,1.15e-09,18;CL:0000789,1.15e-09,18;CL:0002420,1.15e-09,18;CL:0002419,1.15e-09,18;CL:0000790,1.15e-09,18;CL:0000037,8.37e-08,168;CL:0000084,6.18e-07,25;CL:0000827,6.18e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000790;1.09e-09;18!CL:0000051;3.99e-07;53 | |ontology_enrichment_development_v019=CL:0000790;1.09e-09;18!CL:0000051;3.99e-07;53 | ||
|ontology_enrichment_disease=DOID:3095!5.62e-07!22;DOID:2994!5.62e-07!22 | |ontology_enrichment_disease=DOID:3095!5.62e-07!22;DOID:2994!5.62e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;6.53e-07;22!DOID:2994;6.53e-07;22 | |ontology_enrichment_disease_v019=DOID:3095;6.53e-07;22!DOID:2994;6.53e-07;22 | ||
|ontology_enrichment_disease_v019_2=DOID:3095,5.62e-07,22;DOID:2994,5.62e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.01e-17!115;UBERON:0000073!1.39e-10!94;UBERON:0001016!1.39e-10!94;UBERON:0001017!1.98e-10!82;UBERON:0001049!5.40e-10!57;UBERON:0005068!5.40e-10!57;UBERON:0006241!5.40e-10!57;UBERON:0007135!5.40e-10!57;UBERON:0005743!6.25e-10!86;UBERON:0003080!1.23e-08!42;UBERON:0002780!2.21e-08!41;UBERON:0001890!2.21e-08!41;UBERON:0006240!2.21e-08!41;UBERON:0000955!3.62e-08!69;UBERON:0006238!3.62e-08!69;UBERON:0002616!6.68e-08!59;UBERON:0002346!5.27e-07!90 | |ontology_enrichment_uberon=UBERON:0007023!4.01e-17!115;UBERON:0000073!1.39e-10!94;UBERON:0001016!1.39e-10!94;UBERON:0001017!1.98e-10!82;UBERON:0001049!5.40e-10!57;UBERON:0005068!5.40e-10!57;UBERON:0006241!5.40e-10!57;UBERON:0007135!5.40e-10!57;UBERON:0005743!6.25e-10!86;UBERON:0003080!1.23e-08!42;UBERON:0002780!2.21e-08!41;UBERON:0001890!2.21e-08!41;UBERON:0006240!2.21e-08!41;UBERON:0000955!3.62e-08!69;UBERON:0006238!3.62e-08!69;UBERON:0002616!6.68e-08!59;UBERON:0002346!5.27e-07!90 | ||
|ontology_enrichment_uberon_v019=UBERON:0000922;5.12e-08;49 | |ontology_enrichment_uberon_v019=UBERON:0000922;5.12e-08;49 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.89e-17,114;UBERON:0001016,8.00e-11,89;UBERON:0001017,3.45e-10,81;UBERON:0001049,9.68e-10,56;UBERON:0005068,9.68e-10,56;UBERON:0006241,9.68e-10,56;UBERON:0007135,9.68e-10,56;UBERON:0000073,8.99e-09,53;UBERON:0002616,8.99e-09,53;UBERON:0002780,2.21e-08,41;UBERON:0001890,2.21e-08,41;UBERON:0003080,2.21e-08,41;UBERON:0006240,2.21e-08,41;UBERON:0000955,6.13e-08,68;UBERON:0006238,6.13e-08,68;UBERON:0002346,8.32e-07,86 | |||
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| ||
|short_description=p1@ZCCHC11 | |short_description=p1@ZCCHC11 | ||
}} | }} |
Latest revision as of 12:55, 18 September 2015
Short description: | p1@ZCCHC11 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ZCCHC11_5end |
Coexpression cluster: | C986_cerebellum_CD4_granulocyte_Mast_pineal_non_pituitary |
Association with transcript: | 0bp_to_ENST00000371544, ENST00000470626, ENST00000528642, NM_001009881, NM_015269, uc001ctx.2, uc001cty.2, uc001ctz.2, uc001cuc.2, uc001cud.2, uc009vze.1_5end |
EntrezGene: | ZCCHC11 |
HGNC: | 28981 |
UniProt: | Q5TAX3E9PQS7E9PKY2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 5.71e-11 | 53 |
common lymphoid progenitor | 5.71e-11 | 53 |
lymphoid lineage restricted progenitor cell | 6.99e-11 | 52 |
mature alpha-beta T cell | 1.15e-09 | 18 |
alpha-beta T cell | 1.15e-09 | 18 |
immature T cell | 1.15e-09 | 18 |
mature T cell | 1.15e-09 | 18 |
immature alpha-beta T cell | 1.15e-09 | 18 |
hematopoietic stem cell | 8.37e-08 | 168 |
T cell | 6.18e-07 | 25 |
pro-T cell | 6.18e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.89e-17 | 114 |
nervous system | 8.00e-11 | 89 |
central nervous system | 3.45e-10 | 81 |
neural tube | 9.68e-10 | 56 |
neural rod | 9.68e-10 | 56 |
future spinal cord | 9.68e-10 | 56 |
neural keel | 9.68e-10 | 56 |
regional part of nervous system | 8.99e-09 | 53 |
regional part of brain | 8.99e-09 | 53 |
regional part of forebrain | 2.21e-08 | 41 |
forebrain | 2.21e-08 | 41 |
anterior neural tube | 2.21e-08 | 41 |
future forebrain | 2.21e-08 | 41 |
brain | 6.13e-08 | 68 |
future brain | 6.13e-08 | 68 |
neurectoderm | 8.32e-07 | 86 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 5.62e-07 | 22 |
germ cell cancer | 5.62e-07 | 22 |