FFCP PHASE1:Hg19::chr1:173174706..173174733,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7292 | |EntrezGene=7292 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11934 | |HGNC=11934 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IV74 | |UniProt=Q8IV74 | ||
|association_with_transcript=-9bp_to_ENST00000367718,uc001giv.2_5end | |association_with_transcript=-9bp_to_ENST00000367718,uc001giv.2_5end | ||
|cluster_id=chr1:173174706..173174733,- | |||
|coexpression_cluster_id=C725 | |||
|description=CAGE_peak_3_at_TNFSF4_5end | |description=CAGE_peak_3_at_TNFSF4_5end | ||
|id=chr1:173174706..173174733,- | |id=chr1:173174706..173174733,- | ||
|ontology_enrichment_celltype=CL:0002139!2.68e-13!24;CL:0000071!7.59e-12!18;CL:0002546!7.59e-12!18;CL:0000115!4.97e-08!35;CL:1000413!7.73e-08!9 | |ontology_enrichment_celltype=CL:0002139!2.68e-13!24;CL:0000071!7.59e-12!18;CL:0002546!7.59e-12!18;CL:0000115!4.97e-08!35;CL:1000413!7.73e-08!9 | ||
|ontology_enrichment_celltype_v019=CL:0002139;6.79e-17;24!CL:0000071;5.27e-14;18!CL:1000413;4.10e-11;9!CL:0000115;1.95e-09;36!CL:0002544;3.88e-08;6!CL:0002543;9.72e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.10e-16,24;CL:0000071,5.49e-14,18;CL:0002546,5.49e-14,18;CL:1000413,4.63e-11,9;CL:0000115,3.87e-10,36;CL:0002544,4.92e-08,6;CL:0002543,9.05e-08,6;CL:0002078,1.49e-07,45;CL:0000213,3.00e-07,58;CL:0000215,3.00e-07,58 | |||
|ontology_enrichment_development_v019=CL:0002546;5.27e-14;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004535!1.89e-19!110;UBERON:0001009!2.06e-18!113;UBERON:0000178!1.57e-15!15;UBERON:0000179!1.57e-15!15;UBERON:0000463!1.57e-15!15;UBERON:0001986!7.59e-12!18;UBERON:0004638!7.59e-12!18;UBERON:0004852!7.59e-12!18;UBERON:0004872!8.16e-11!84;UBERON:0000487!2.68e-10!22;UBERON:0000055!7.13e-10!69;UBERON:0002049!2.33e-09!79;UBERON:0007798!2.33e-09!79;UBERON:0001981!3.30e-09!60;UBERON:0007500!3.30e-09!60;UBERON:0004537!3.30e-09!60;UBERON:0006965!3.30e-09!60;UBERON:0006914!1.89e-08!25;UBERON:0003915!7.73e-08!9;UBERON:0004700!7.73e-08!9;UBERON:0001917!7.73e-08!9;UBERON:0001638!3.21e-07!9;UBERON:0003920!3.21e-07!9;UBERON:0004582!3.21e-07!9 | |ontology_enrichment_uberon=UBERON:0004535!1.89e-19!110;UBERON:0001009!2.06e-18!113;UBERON:0000178!1.57e-15!15;UBERON:0000179!1.57e-15!15;UBERON:0000463!1.57e-15!15;UBERON:0001986!7.59e-12!18;UBERON:0004638!7.59e-12!18;UBERON:0004852!7.59e-12!18;UBERON:0004872!8.16e-11!84;UBERON:0000487!2.68e-10!22;UBERON:0000055!7.13e-10!69;UBERON:0002049!2.33e-09!79;UBERON:0007798!2.33e-09!79;UBERON:0001981!3.30e-09!60;UBERON:0007500!3.30e-09!60;UBERON:0004537!3.30e-09!60;UBERON:0006965!3.30e-09!60;UBERON:0006914!1.89e-08!25;UBERON:0003915!7.73e-08!9;UBERON:0004700!7.73e-08!9;UBERON:0001917!7.73e-08!9;UBERON:0001638!3.21e-07!9;UBERON:0003920!3.21e-07!9;UBERON:0004582!3.21e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.38e-32;15!UBERON:0000179;2.38e-32;15!UBERON:0000463;2.38e-32;15!UBERON:0002390;9.05e-15;32!UBERON:0004638;5.27e-14;18!UBERON:0001986;5.27e-14;18!UBERON:0004852;5.27e-14;18!UBERON:0000487;2.22e-13;22!UBERON:0006914;1.72e-11;25!UBERON:0003915;4.10e-11;9!UBERON:0004700;4.10e-11;9!UBERON:0001917;4.10e-11;9!UBERON:0002193;1.68e-10;42!UBERON:0004535;6.70e-08;109!UBERON:0000490;9.57e-08;33!UBERON:0001009;6.42e-07;112 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.34e-32,15;UBERON:0000179,2.34e-32,15;UBERON:0000463,2.34e-32,15;UBERON:0004535,2.87e-20,109;UBERON:0001009,1.72e-19,112;UBERON:0004638,5.49e-14,18;UBERON:0001986,5.49e-14,18;UBERON:0004852,5.49e-14,18;UBERON:0000487,2.07e-13,22;UBERON:0006914,1.63e-11,25;UBERON:0003915,4.63e-11,9;UBERON:0004700,4.63e-11,9;UBERON:0001917,4.63e-11,9;UBERON:0003081,1.22e-08,203;UBERON:0000055,1.07e-07,68;UBERON:0002049,3.95e-07,78;UBERON:0007798,3.95e-07,78 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572471974262113,0.136874425072884,0,0.840547463227464,0.656804715599566,1.10195093839151,0.393364276848904,0,0.154816123316076,0,0,0,0,0,3.22960483268332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,1.09227722252426,0,0,0.400395987036012,0,0.661044872784862,0,0,0,0,0,0.560508562981536,1.58030450865046,0,0,0,0,0,0,0,0,0,0,0,0,0,0.986627427622057,2.21080014228679,0.869409257205157,0,0.267540828089713,0,0.226618685395132,0,0,0,0,0,0,0.301150238155546,0.127986611154418,0,0,0,0,0,0,0,0,0.511450247374121,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0.715471872916026,0.571994910780128,0.371457501329565,8.34802110940161,4.30117297553062,1.04142150482278,2.26123176769604,1.25849830862972,0.275118041940067,2.92592953151535,1.03366703667732,1.06729878806013,1.00416183829401,0,0.760272105718513,0.24406205754817,0.735326160691737,0,1.69669483739752,0,1.23872628531654,3.06633274931766,0.949265659568129,3.11442964681692,0,0,0,0,1.13967460498122,0.529636723252875,0,0.354668382198357,0,2.1349799145941,0.98667019366864,0.311211035399766,2.42479209725439,0.817309515567294,0,0,0,0,0.570471821544449,0,0.117434498643765,0,0.140450806702248,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,6.12533789064114,0.89694817844431,2.98980344345994,0,0,0.206105058476878,1.28820270022815,1.67505170698431,0,0,0,0.552299391853796,0,0,0.906768884048762,0,0.386521706326594,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0.370353780634118,0,0,0,0,0.234817388471643,0.433099343283221,0,0,0,0,0,0,0,0,0,0,0,0,0,6.89728533054321,0.176096868026452,0.207328115540772,0,0.12624243342638,0,0,0,0,0.102827492703324,0,0,0,0,0,5.04159691455333,0,0,2.92531928243358,1.04007436911366,0,0,0,0.428933980974443,0,0,0,0.710783897485092,0,0,0,0,0,0,0,0,0,0,0.579125226670317,0,0.179060963239896,0,0,0,0,0,0,0,0,0,1.49801404789436,0,3.31532410748828,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,0.647142602455851,0,0,0,0,0.248107807818777,0.306923946576125,0.280660094433074,0,1.02341449813341,0.160853921143607,0,0.154209693802656,0.177561725313127,0.0821271560138091,0,0.116210378459959,0,0,0,0.574072240823034,0.910455840033585,0,0,0,0,0,0,0,0.850468526382578,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,1.6068392984416,0.096670718292122,0,0,0.137836572484531,0.107420244868274,0.145016693914229,0.170453254832202,0,0,0,0,0,0,0,0,0.308033580176089,0,0.869932992075073,0.18532421910392,1.71749864090389,0,0.632758849437452,1.14378116354295,0,0,0,0,0.359744915166629,0,0.235624804691373,0.606547444719948,0,0,0,0.487426979262569,0,0,0.282810863907425,0,0,0,0,0,0,0.405820753925408,0,0,0.860468113224309,0.392996164052485,1.07001315444375,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,9.13405696617905,5.35246044999663,5.69647187174163,3.81170840732462,4.52498500394814,9.72709966789076,6.48037724685738,4.75875105776562,0,0,0,0,0.28853842595289,0,0.159426272728822,4.39074617152197,0.383010740264733,4.02179807175377,0,0,3.42352018549788,0,0,0.338583555603207,0,0,0,0,0,0,0,0.586164286206121,0,0,0,0.66614393599564,0,0,0,0,0,0,0,0,0,0,0,1.22439575525196,0,0,0,0.276283915531148,0,0,0.123084805461069,8.70910845453061,0,0,0,0.0986434056369336,2.3948309234694,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.47313502185028,0,0,1.41282230755522,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,6.22694370229306,8.7730396652017,7.83164621290915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.25159347938625,6.17156793242766,0,0.288950589901519,0,0.136905378891993,0,0,0.262887354279314,0,0,0,0,0,0,0.134366944973453,9.00749708856009,0,0,0.0824158583811665,0,0,1.52411997718412,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0.864221491201268,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0.320362237703084,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.454947352624943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.477890301491107,0.449803112163605,0.621051827505038,0,7.70940972218185,4.17396049449387,0.150257608997218,3.80805212168795,2.44122439922797,0,0.644463342254931,0,5.17524655308201,16.4011383511893,0,0,0,0,0,0,0,0.463044948647668,0,1.25362188757041,0,0,0.176689145945881,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0.39997479170986,0,0.172214979660816,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0,0.630893960010027,0,0,0,0,0,0,0.205116364240755,0,0.0691572524642179,0,0,0,0,0,0,0.381382095467167,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691403925334676,0,0,0,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60330401607244,3.40853619036631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0.563903507879121,0.322289439867886,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378893491091197,0.803892390468535,0,0,0.213233981900981,0,0.258355639344024,0.248298857183432,1.79410980128981,0,0,0,0,0.202056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| ||
|short_description=p3@TNFSF4 | |short_description=p3@TNFSF4 | ||
}} | }} |
Latest revision as of 17:25, 18 September 2015
Short description: | p3@TNFSF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TNFSF4_5end |
Coexpression cluster: | C725_Mast_cord_mycosis_mesenchymal_Endothelial_hepatic_Mesenchymal |
Association with transcript: | -9bp_to_ENST00000367718, uc001giv.2_5end |
EntrezGene: | TNFSF4 |
HGNC: | 11934 |
UniProt: | Q8IV74 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.10e-16 | 24 |
blood vessel endothelial cell | 5.49e-14 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.49e-14 | 18 |
endothelial cell of artery | 4.63e-11 | 9 |
endothelial cell | 3.87e-10 | 36 |
aortic endothelial cell | 4.92e-08 | 6 |
vein endothelial cell | 9.05e-08 | 6 |
meso-epithelial cell | 1.49e-07 | 45 |
lining cell | 3.00e-07 | 58 |
barrier cell | 3.00e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
blood | 2.34e-32 | 15 |
haemolymphatic fluid | 2.34e-32 | 15 |
organism substance | 2.34e-32 | 15 |
cardiovascular system | 2.87e-20 | 109 |
circulatory system | 1.72e-19 | 112 |
blood vessel endothelium | 5.49e-14 | 18 |
endothelium | 5.49e-14 | 18 |
cardiovascular system endothelium | 5.49e-14 | 18 |
simple squamous epithelium | 2.07e-13 | 22 |
squamous epithelium | 1.63e-11 | 25 |
endothelial tube | 4.63e-11 | 9 |
arterial system endothelium | 4.63e-11 | 9 |
endothelium of artery | 4.63e-11 | 9 |
lateral plate mesoderm | 1.22e-08 | 203 |
vessel | 1.07e-07 | 68 |
vasculature | 3.95e-07 | 78 |
vascular system | 3.95e-07 | 78 |