FFCP PHASE1:Hg19::chr2:182321925..182321940,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3676 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6140 | |||
|TSSclassifier=strong | |||
|UniProt=Q7Z4L6 | |||
|association_with_transcript=0bp_to_ENST00000339307,ENST00000476089_5end | |||
|cluster_id=chr2:182321925..182321940,+ | |||
|description=CAGE_peak_4_at_ITGA4_5end | |||
|id=chr2:182321925..182321940,+ | |||
|ontology_enrichment_celltype=CL:0000037!3.75e-52!172;CL:0000566!3.75e-52!172;CL:0000988!1.27e-51!182;CL:0002032!3.93e-48!165;CL:0000837!3.93e-48!165;CL:0000838!4.08e-36!52;CL:0000542!4.82e-35!53;CL:0000051!4.82e-35!53;CL:0000738!9.81e-35!140;CL:0002087!3.62e-34!119;CL:0002031!6.78e-33!124;CL:0000945!2.03e-18!24;CL:0000826!2.03e-18!24;CL:0000763!7.37e-17!112;CL:0000049!7.37e-17!112;CL:0000084!4.83e-16!25;CL:0000827!4.83e-16!25;CL:0000134!8.33e-16!358;CL:0002320!3.28e-15!365;CL:0000791!2.00e-13!18;CL:0000789!2.00e-13!18;CL:0002420!2.00e-13!18;CL:0002419!2.00e-13!18;CL:0000790!2.00e-13!18;CL:0000236!2.00e-13!14;CL:0000219!4.63e-13!390;CL:0000625!6.68e-10!11;CL:0000034!1.27e-09!444;CL:0000048!1.96e-09!430;CL:0000723!8.57e-09!436;CL:0002057!6.64e-08!42;CL:0000766!3.48e-07!76;CL:0000860!7.06e-07!45;CL:0000557!7.35e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000542;7.37e-25;53!CL:0000945;4.96e-22;24!CL:0000084;9.65e-20;25!CL:0000625;1.55e-17;11!CL:0000236;4.63e-17;13!CL:0000791;1.13e-13;18!CL:0000789;1.13e-13;18!CL:0002419;1.13e-13;18!CL:0002087;3.23e-09;104!CL:0000988;1.40e-08;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,9.72e-46,168;CL:0000838,1.07e-45,52;CL:0000542,1.33e-44,53;CL:0000051,1.33e-44,53;CL:0000988,9.02e-44,177;CL:0002032,4.34e-42,161;CL:0000837,4.34e-42,161;CL:0002087,6.59e-25,115;CL:0000945,4.05e-22,24;CL:0000826,4.05e-22,24;CL:0000738,2.44e-21,136;CL:0002031,5.57e-21,120;CL:0000084,1.15e-19,25;CL:0000827,1.15e-19,25;CL:0000236,9.53e-19,14;CL:0000625,1.62e-17,11;CL:0000791,1.33e-13,18;CL:0000789,1.33e-13,18;CL:0002420,1.33e-13,18;CL:0002419,1.33e-13,18;CL:0000790,1.33e-13,18;CL:0000134,9.59e-13,354;CL:0002320,3.96e-12,361;CL:0000219,5.50e-10,386;CL:0000763,2.31e-09,108;CL:0000049,2.31e-09,108;CL:0000034,1.35e-08,441;CL:0000048,7.33e-08,427;CL:0000723,1.66e-07,433 | |||
|ontology_enrichment_development_v019=CL:0000051;7.37e-25;53!CL:0000790;1.13e-13;18 | |||
|ontology_enrichment_disease=DOID:2531!3.46e-22!51;DOID:0060083!3.46e-22!51;DOID:1240!3.52e-18!39;DOID:8692!1.02e-16!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;2.43e-25;31!DOID:1240;1.81e-22;39!DOID:2531;6.47e-19;51!DOID:0060083;6.47e-19;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,2.23e-30,51;DOID:0060083,2.23e-30,51;DOID:1240,5.45e-29,39;DOID:8692,1.55e-26,31 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.14e-15!102;UBERON:0003061!1.14e-15!102;UBERON:0002384!6.73e-15!375;UBERON:0002193!5.98e-14!112;UBERON:0000178!6.10e-11!15;UBERON:0000179!6.10e-11!15;UBERON:0000463!6.10e-11!15;UBERON:0004177!9.89e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0004177;4.51e-10;5!UBERON:0005057;4.51e-10;5!UBERON:0002390;2.02e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.71e-11,371;UBERON:0004177,3.80e-07,7;UBERON:0005057,3.80e-07,7 | |||
|phase1_expression=0.908391896352783,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0.251085279189606,2.06316195519468,2.38091709404843,2.91229890860613,0.393364276848904,2.68680578668049,0.309632246632152,0,0,0,0.92960640696362,0.710846162437108,11.7440175733939,0,0.601633342410425,0.868043482863407,0.223915474239924,1.29557466407592,0,0.436194716338694,0,0.242584061187816,0,0.411167888021826,0,0.575384784644301,0.768482119587302,0.945928919554341,0,0.645484683583826,0,0.376484679085209,0,0,0.918251677112708,0.320929027076094,1.91801137739712,0,0.598390972864896,0.852449501065388,0.580418477257168,0,0,0.502497330513487,1.0429658368404,0,0,0.736555271975129,0,1.05627643155971,1.06302149982522,0.628975936525128,0.336985893439485,0.150176892841506,0.32145117339416,1.71007646244749,1.19350006319454,1.46131323011707,7.03984977845291,4.91524750135918,3.55803701545422,0.853460445133014,4.40435585739614,7.47178171940828,7.27149360063348,6.67837628174755,3.98449078376614,9.98303221930596,4.96955196562797,11.8954195721123,9.52864557068611,11.8522838148785,0.786839080455332,1.17903228824749,1.43921049299656,0.501559486172034,0.32592226663359,0,0,12.812202541795,0.883817722424512,0.886135578334485,0.812411591295047,2.68991771423918,4.81219585971549,3.28875809207352,6.07970039128866,1.44901542867526,0.14828656316206,0.267540828089713,0,9.29136610120043,0.383220493601921,1.71813722741315,1.77113784413652,1.59282707162048,1.95325036156926,1.90090408889675,1.35517607169996,1.02389288923535,4.99722906209383,1.18388626022008,2.46338399076314,2.62088766192152,4.01160293675261,3.04131248153878,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.175669571386252,0,0,0,0.324547393654683,0,0,0.238490624305342,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0.453728732640084,0,0,0.211931901159562,0,0.412210116953756,0.257640540045629,0,0,0,0.252433774244115,0.0920498986422993,0,0.710019185033229,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.7219335672204,0,0,0,0,0,0,0,0,0,0,0.469634776943287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.088048434013226,0.621984346622316,0.576479813667846,0.12624243342638,0,0,0,0,0.102827492703324,0,0,0,0.43596006883328,0,0.258543431515556,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336255431980582,5.71389204585589,3.88129634747131,3.9786341246722,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686286847621712,1.6541442089831,0.431428401637234,1.49418580924822,0,0,0,0.248107807818777,0.153461973288062,0,0,0.511707249066704,0.321707842287215,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0.103041011647722,15.0173922302083,14.0266149865,0,0,0,0,0,0,0.137836572484531,0,0,0.170453254832202,0.356128142586949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0.202910376962704,0.30982349809975,0.563391205064483,0,0,1.07001315444375,0,0.211107635297664,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0.507447609232169,0.764637207142375,1.70894156152249,1.90585420366231,1.23408681925858,0.648473311192717,1.08006287447623,0.79312517629427,0,0,0,0,3.17392268548179,4.76650350434375,34.4360749094256,116.953511659631,42.322686799253,4.44514523720154,1.62310970137278,3.08876895924805,5.47763229679661,1.09675927041116,7.51903431270201,160.657897133722,16.7011598107848,23.4087660341615,12.3495408930195,2.40453741329035,0,0.894704431569664,0.500547425135725,5.08009048045305,0.835218521685727,1.23087398947712,201.759936143083,86.931783647431,93.0514233579807,0,0.293016358543788,0,0,0,0,0,0,0,0.140669416410513,0,3.29607748453519,0,0,2.76283915531148,0,0,3.81562896929315,0,0,0,1.02314474045374,0.197286811273867,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0,0,74.6011076828876,5.96524974301094,16.7873798719158,0,0,0,0,7.4700192120778,0,0,0,0,0.995261931078505,0.0884575645033392,0.611030144933625,1.48260564340311,0.988511511572023,0.939797545549098,0,0.802577647298789,0,0.547364367646998,0,0,0,2.41981432097328,0,0.063186579628488,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,33.2141128974128,0,0,0,0,0,0,0.429226048136571,0,0.268733889946905,0,0,0,0,0,0,1.77813997338147,0,0,0,0,0,0,0,0,0,0,0.262272940674991,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0.13223260174269,0,0,0.213574825135389,0.471612915298998,0,0.992332043623902,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0.159296767163702,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0.400027764663154,0.343395705182793,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,42.5973153171001,6.50819551134259,0.516644938982447,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23658523500376,0,0,0,0,0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| |||
|short_description=p4@ITGA4 | |||
}} |
Latest revision as of 21:03, 18 September 2015
Short description: | p4@ITGA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ITGA4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000339307, ENST00000476089_5end |
EntrezGene: | ITGA4 |
HGNC: | 6140 |
UniProt: | Q7Z4L6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 9.72e-46 | 168 |
lymphoid lineage restricted progenitor cell | 1.07e-45 | 52 |
lymphocyte | 1.33e-44 | 53 |
common lymphoid progenitor | 1.33e-44 | 53 |
hematopoietic cell | 9.02e-44 | 177 |
hematopoietic oligopotent progenitor cell | 4.34e-42 | 161 |
hematopoietic multipotent progenitor cell | 4.34e-42 | 161 |
nongranular leukocyte | 6.59e-25 | 115 |
lymphocyte of B lineage | 4.05e-22 | 24 |
pro-B cell | 4.05e-22 | 24 |
leukocyte | 2.44e-21 | 136 |
hematopoietic lineage restricted progenitor cell | 5.57e-21 | 120 |
T cell | 1.15e-19 | 25 |
pro-T cell | 1.15e-19 | 25 |
B cell | 9.53e-19 | 14 |
CD8-positive, alpha-beta T cell | 1.62e-17 | 11 |
mature alpha-beta T cell | 1.33e-13 | 18 |
alpha-beta T cell | 1.33e-13 | 18 |
immature T cell | 1.33e-13 | 18 |
mature T cell | 1.33e-13 | 18 |
immature alpha-beta T cell | 1.33e-13 | 18 |
mesenchymal cell | 9.59e-13 | 354 |
connective tissue cell | 3.96e-12 | 361 |
motile cell | 5.50e-10 | 386 |
myeloid cell | 2.31e-09 | 108 |
common myeloid progenitor | 2.31e-09 | 108 |
stem cell | 1.35e-08 | 441 |
multi fate stem cell | 7.33e-08 | 427 |
somatic stem cell | 1.66e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.71e-11 | 371 |
hemopoietic organ | 3.80e-07 | 7 |
immune organ | 3.80e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 2.23e-30 | 51 |
immune system cancer | 2.23e-30 | 51 |
leukemia | 5.45e-29 | 39 |
myeloid leukemia | 1.55e-26 | 31 |