FFCP PHASE1:Hg19::chr21:47531453..47531471,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr21:47531453..47531471,+
|short_description=p13@COL6A2
|description=CAGE_peak_13_at_COL6A2_5end
|association_with_transcript=62bp_to_EU832113,EU832207_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1292 | |EntrezGene=1292 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2212 | |HGNC=2212 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=62bp_to_EU832113,EU832207_5end | |||
|cluster_id=chr21:47531453..47531471,+ | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_13_at_COL6A2_5end | |||
|id=chr21:47531453..47531471,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.18e-47!180;CL:0000057!1.40e-27!75;CL:0000680!7.41e-19!57;CL:0000056!7.41e-19!57;CL:0000355!7.41e-19!57;CL:0000187!4.13e-18!54;CL:0000183!1.06e-17!59;CL:0000393!1.77e-17!60;CL:0000211!1.77e-17!60;CL:0000192!1.27e-15!42;CL:0000514!1.27e-15!42;CL:0000048!4.03e-14!430;CL:0000723!6.05e-13!436;CL:0000034!1.09e-12!444;CL:0000359!2.10e-12!32;CL:0002620!1.89e-11!23;CL:0000499!5.81e-08!27 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.34e-13;23!CL:0000057;3.37e-13;73!CL:0000723;1.52e-11;61!CL:0000134;1.82e-11;55!CL:0000192;3.41e-10;43!CL:0000048;3.80e-10;58!CL:0000359;4.65e-10;32!CL:0002320;6.97e-10;188!CL:0000187;1.10e-09;55!CL:0000393;2.29e-08;61!CL:0000211;2.29e-08;61!CL:0002570;3.58e-08;8!CL:0000034;4.08e-08;69!CL:0002334;4.69e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.62e-33,76;CL:0000048,6.07e-23,427;CL:0000723,7.61e-22,433;CL:0000034,1.94e-20,441;CL:0000680,2.57e-18,58;CL:0000056,2.57e-18,58;CL:0000355,2.57e-18,58;CL:0000187,2.49e-17,55;CL:0000393,3.47e-14,61;CL:0000211,3.47e-14,61;CL:0000192,3.98e-14,43;CL:0000514,3.98e-14,43;CL:0002620,9.78e-14,23;CL:0002320,9.16e-13,361;CL:0000134,1.71e-10,354;CL:0000359,2.25e-10,32;CL:0002570,2.75e-08,8;CL:0002334,6.92e-08,12;CL:0000219,1.02e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000514;3.41e-10;43!CL:0000355;9.21e-10;58 | |||
|ontology_enrichment_disease=DOID:2394!6.02e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;8.45e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.81e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.04e-25!83;UBERON:0002329!1.04e-25!83;UBERON:0003077!1.04e-25!83;UBERON:0003059!1.04e-25!83;UBERON:0007282!1.04e-25!83;UBERON:0009618!1.04e-25!83;UBERON:0007285!1.04e-25!83;UBERON:0004290!1.83e-24!70;UBERON:0000486!1.22e-20!82;UBERON:0002385!2.97e-20!63;UBERON:0001015!2.97e-20!63;UBERON:0000383!2.97e-20!63;UBERON:0001134!7.39e-20!61;UBERON:0002036!7.39e-20!61;UBERON:0003082!7.39e-20!61;UBERON:0005256!3.01e-17!143;UBERON:0003102!5.35e-13!95;UBERON:0002199!2.23e-11!45;UBERON:0002416!2.23e-11!45;UBERON:0002100!3.33e-11!216;UBERON:0001013!6.98e-10!14;UBERON:0003104!7.28e-09!238;UBERON:0009142!7.28e-09!238;UBERON:0000475!7.60e-09!365;UBERON:0002097!9.08e-09!40;UBERON:0004573!1.55e-08!33;UBERON:0004571!1.55e-08!33;UBERON:0001637!2.89e-08!42;UBERON:0003509!2.89e-08!42;UBERON:0004572!2.89e-08!42;UBERON:0004872!2.99e-08!84;UBERON:0000481!2.28e-07!347;UBERON:0001135!8.74e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;1.52e-12;14!UBERON:0002385;1.84e-11;31!UBERON:0001015;1.84e-11;31!UBERON:0000383;1.84e-11;31!UBERON:0002384;2.42e-10;198!UBERON:0002199;9.66e-10;46!UBERON:0002416;9.66e-10;46!UBERON:0003102;6.92e-09;50!UBERON:0004573;1.80e-08;33!UBERON:0004571;1.80e-08;33!UBERON:0002097;1.88e-08;41!UBERON:0002067;1.80e-07;9!UBERON:0002204;2.17e-07;70!UBERON:0001134;6.66e-07;16!UBERON:0002036;6.66e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.02e-24,73;UBERON:0002329,1.41e-24,71;UBERON:0003059,1.41e-24,71;UBERON:0007282,1.41e-24,71;UBERON:0004290,1.41e-24,71;UBERON:0009618,1.41e-24,71;UBERON:0003077,6.01e-24,72;UBERON:0007285,6.01e-24,72;UBERON:0007503,1.55e-20,78;UBERON:0000486,4.32e-20,83;UBERON:0001134,6.29e-19,62;UBERON:0002036,6.29e-19,62;UBERON:0003082,6.29e-19,62;UBERON:0002385,6.74e-19,64;UBERON:0001015,6.74e-19,64;UBERON:0000383,6.74e-19,64;UBERON:0005256,2.53e-17,122;UBERON:0003104,1.52e-16,160;UBERON:0009142,1.52e-16,160;UBERON:0002199,1.51e-14,46;UBERON:0002416,1.51e-14,46;UBERON:0003102,1.13e-12,99;UBERON:0001013,1.48e-12,14;UBERON:0002384,1.57e-12,371;UBERON:0002097,4.02e-11,41;UBERON:0000926,4.31e-11,315;UBERON:0004120,4.31e-11,315;UBERON:0006603,4.31e-11,315;UBERON:0000490,1.41e-09,148;UBERON:0004573,4.61e-09,33;UBERON:0004571,4.61e-09,33;UBERON:0001637,1.58e-08,42;UBERON:0003509,1.58e-08,42;UBERON:0004572,1.58e-08,42;UBERON:0004872,1.73e-08,83;UBERON:0002100,3.23e-08,199;UBERON:0002067,1.58e-07,9;UBERON:0004016,1.58e-07,9;UBERON:0010083,1.58e-07,9;UBERON:0000479,3.86e-07,773;UBERON:0004535,7.97e-07,109 | |||
|phase1_expression=2.90685406832891,7.70761886007539,2.67813367782345,1.0007329835313,3.12872766099101,7.85104671690332,7.59899634504932,6.94891860769514,6.7908263331958,0,0,0.218441372130172,0.263766978228454,3.83675694176145,6.95934489028623,11.4295274896802,5.42425075221579,5.84248072309899,6.34312638427659,0.492484232307152,3.87601313364081,3.44800193625897,0.572471974262113,0.958120975510189,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289648807765598,2.43806866313962,0,0.511450247374121,1.80719576192283,6.51739283826656,4.34539556882471,7.15757352345989,9.24606253575008,0.0945348171640679,1.10864698731282,0.175669571386252,0.458426764241994,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98183171017191,2.91250176828533,1.45650098894541,14.3418310374407,2.83734705758686,2.80338800071154,3.20246987189115,2.4666754841716,1.55605517699883,2.02066008104532,2.61539044981534,1.96764655938411,5.76175924479999,1.87457145467037,6.86752169026705,1.71141546463335,6.27684458317565,3.64046945795671,4.20869655357142,3.23036855415172,1.42907919878425,6.01888154827663,2.58314452939414,5.94001428641027,11.1270118175351,4.55080680969013,12.9351265526923,1.5150250255866,1.50142223846357,0.831192346452549,1.31693286264251,5.82326812018137,7.51190294532984,0.113432183160021,5.56107870635472,5.33893472046419,4.66250182551036,6.00182192168805,2.98852334791473,3.86460810068444,3.53622027030021,4.55696097051419,2.33848812386877,4.79624171063818,5.06274442532646,5.33431987502079,6.74518225781567,2.11579406278045,1.86516651541536,0,0.272746120590835,0,0.243947412259191,0.132529768321485,0.232387885739037,0.207322110030741,0.504641701751257,1.45990943630332,9.38697193978896,13.5080597020506,2.76269842704961,3.25057549622385,3.60939740834793,0,0,0,0,0,0,0,0,0,0,9.81692416624121,4.115740113314,23.5213938216867,0,0,1.18157981336281,0,0,0,0,0,0,0,2.6064664424826,8.31947828223663,0,0,0.234817388471643,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0,0.12624243342638,0.126995788584338,0,0,0,0.822619941626588,0,0,0.897048674762886,0.43596006883328,0.5867062865676,1.03417372606222,21.4593867511129,6.762422020448,1.59562869950922,1.04007436911366,0.771622122786426,1.41849132023278,2.1313774321288,1.71573592389777,9.22456729165453,0.823240336780769,2.60588947434988,3.909311436168,2.37585561880029,0.602878754119172,0,0.199945982364114,0,0,0,1.67737398844108,6.89171615004683,0,1.88215698667853,2.4657158706046,1.07436577943937,0,0,0.646882724578552,0.128343036279748,0,0,0,0.335032530668698,0.637938751653163,0,0,0,1.71768088406796,3.50119364741774,4.34024037919577,2.07970861530807,2.3195768543631,1.89242898040722,1.7571212248907,5.71797589482666,31.8370505678379,8.27784570340039,1.32845119707087,3.50301420229236,3.73599542212756,5.09083009403126,4.46086450954113,0,0,0.213455115606889,0,1.66435439510497,0,2.23297027036899,1.07423381301644,8.13914273855913,3.58789617915963,1.53512174720011,1.44768529029247,7.42090332224955,4.47208112027701,8.5229628150301,1.23190734020714,3.63478100428535,7.32125384297743,0,0,0,2.64073230778596,7.82992022428883,6.94959399284948,0,0.0770153371044148,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0.447749509444357,0,0,0,0.328014645699706,0,0.309123034943167,0.54941678891006,0.165018999841176,0.574265537996172,0,1.6068392984416,4.8335359146061,5.08360436478326,4.45160656705776,3.30807773962873,3.54486808065303,5.075584286998,4.60223788046945,1.60257664164127,0,0,0,0,1.39453664789186,10.0739950985805,2.7881490806424,0.924100740528266,0.532306030317022,1.73986598415015,7.78361720236464,1.5743737541619,1.86079184679834,0.949138274156178,3.43134349062885,2.303080121802,2.56763392820352,4.45484547096312,3.92474320099615,2.15846949099978,3.56898138656871,3.41655966802491,0.808729926293264,3.17020642346017,3.37006764991185,0.975267478179181,3.41198885483798,7.39551027297288,1.77449884830381,4.80778468642623,3.39024349860728,2.2054613741845,2.65375590096488,4.38450885253763,4.05142873986681,1.9676842561399,0.811641507850816,3.0982349809975,3.09865162785466,0.573645408816206,0.687743287091848,2.49669736036875,1.06428319221179,3.16661452946496,3.95153871551882,1.13841952129715,5.24902080367474,0,0.670302275535787,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02555725490326,0.242721043499027,0,0,1.19372242368845,0.296964680832639,0.614321404198464,0,0,1.66963057534359,0,0,3.38721580026819,1.93398740871803,0,0,0,8.70910845453061,0.179736702294654,0,0,1.38100767891707,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0.520874984799877,0,0,0,0,0,0,0,0,1.61595542857974,0.455768223388005,0,0.0897576444097721,0,0,2.56473261525214,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0.995261931078505,1.32686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| ||
|short_description=p13@COL6A2 | |||
}} | }} |
Latest revision as of 22:48, 18 September 2015
Short description: | p13@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | 62bp_to_EU832113, EU832207_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.62e-33 | 76 |
multi fate stem cell | 6.07e-23 | 427 |
somatic stem cell | 7.61e-22 | 433 |
stem cell | 1.94e-20 | 441 |
muscle precursor cell | 2.57e-18 | 58 |
myoblast | 2.57e-18 | 58 |
multi-potent skeletal muscle stem cell | 2.57e-18 | 58 |
muscle cell | 2.49e-17 | 55 |
electrically responsive cell | 3.47e-14 | 61 |
electrically active cell | 3.47e-14 | 61 |
smooth muscle cell | 3.98e-14 | 43 |
smooth muscle myoblast | 3.98e-14 | 43 |
skin fibroblast | 9.78e-14 | 23 |
connective tissue cell | 9.16e-13 | 361 |
mesenchymal cell | 1.71e-10 | 354 |
vascular associated smooth muscle cell | 2.25e-10 | 32 |
mesenchymal stem cell of adipose | 2.75e-08 | 8 |
preadipocyte | 6.92e-08 | 12 |
motile cell | 1.02e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.81e-09 | 14 |