FFCP PHASE1:Hg19::chr12:52886485..52886506,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3853 | |EntrezGene=3853 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6443 | |HGNC=6443 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000549898_5end | |association_with_transcript=0bp_to_ENST00000549898_5end | ||
|cluster_id=chr12:52886485..52886506,- | |||
|coexpression_cluster_id=C594 | |||
|description=CAGE_peak_6_at_KRT6A_5end | |description=CAGE_peak_6_at_KRT6A_5end | ||
|id=chr12:52886485..52886506,- | |id=chr12:52886485..52886506,- | ||
|ontology_enrichment_celltype=CL:0002076!8.58e-25!43;CL:0002368!3.52e-23!13;CL:0000066!7.39e-17!254;CL:0000223!7.54e-17!59;CL:0002159!3.30e-13!13;CL:0002328!4.13e-13!3;CL:0002621!2.39e-12!3;CL:0002541!3.37e-12!3;CL:0002202!6.20e-11!9;CL:0002632!6.20e-11!9;CL:0000240!5.24e-10!6;CL:0000311!5.24e-10!6;CL:0000079!5.24e-10!6;CL:0000237!5.24e-10!6;CL:0000036!5.24e-10!6;CL:0000357!5.24e-10!6;CL:0000114!5.24e-10!6;CL:0002077!1.99e-09!33;CL:0002327!3.12e-09!4;CL:0000575!9.34e-09!2;CL:0002251!5.83e-08!21;CL:0000362!1.53e-07!8;CL:0000622!1.87e-07!5;CL:0000312!3.31e-07!5 | |ontology_enrichment_celltype=CL:0002076!8.58e-25!43;CL:0002368!3.52e-23!13;CL:0000066!7.39e-17!254;CL:0000223!7.54e-17!59;CL:0002159!3.30e-13!13;CL:0002328!4.13e-13!3;CL:0002621!2.39e-12!3;CL:0002541!3.37e-12!3;CL:0002202!6.20e-11!9;CL:0002632!6.20e-11!9;CL:0000240!5.24e-10!6;CL:0000311!5.24e-10!6;CL:0000079!5.24e-10!6;CL:0000237!5.24e-10!6;CL:0000036!5.24e-10!6;CL:0000357!5.24e-10!6;CL:0000114!5.24e-10!6;CL:0002077!1.99e-09!33;CL:0002327!3.12e-09!4;CL:0000575!9.34e-09!2;CL:0002251!5.83e-08!21;CL:0000362!1.53e-07!8;CL:0000622!1.87e-07!5;CL:0000312!3.31e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002368;2.36e-24;13!CL:0002328;5.49e-21;3!CL:0002076;6.84e-20;42!CL:0002621;1.37e-19;3!CL:0000575;9.78e-14;2!CL:0002202;2.65e-12;9!CL:0002632;2.65e-12;9!CL:0000349;4.92e-12;19!CL:0002541;6.84e-10;3!CL:0002577;1.86e-09;3!CL:0002623;1.86e-09;3!CL:0002231;2.73e-09;3!CL:0002251;9.08e-08;20!CL:0002327;2.10e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.79e-27,42;CL:0002368,2.28e-24,13;CL:0002328,5.68e-21,3;CL:0002621,1.09e-19,3;CL:0000223,3.90e-19,58;CL:0000575,1.19e-13,2;CL:0002202,2.73e-12,9;CL:0002632,2.73e-12,9;CL:0000349,4.64e-12,19;CL:0000066,3.73e-11,253;CL:0002541,7.15e-10,3;CL:0002577,1.57e-09,3;CL:0002623,1.64e-09,3;CL:0002231,2.97e-09,3;CL:0002251,8.24e-08,20;CL:0002327,2.27e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000223;3.78e-11;58!UBERON:0009143;1.39e-07;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!7.96e-21!14;UBERON:0000158!7.96e-21!14;UBERON:0003124!4.07e-19!7;UBERON:0004815!4.13e-13!3;UBERON:0002031!4.13e-13!3;UBERON:0001949!2.39e-12!3;UBERON:0000476!3.37e-12!3;UBERON:0000920!3.37e-12!3;UBERON:0000478!1.95e-11!24;UBERON:0001004!4.43e-10!72;UBERON:0002185!6.23e-10!4;UBERON:0001911!3.12e-09!4;UBERON:0005333!3.12e-09!4;UBERON:0008425!3.12e-09!4;UBERON:0005311!3.12e-09!4;UBERON:0001987!4.49e-09!4;UBERON:0004340!4.49e-09!4;UBERON:0004119!6.71e-09!169;UBERON:0000925!6.71e-09!169;UBERON:0006595!6.71e-09!169;UBERON:0000166!4.23e-08!21;UBERON:0000165!1.73e-07!28;UBERON:0000930!1.73e-07!28;UBERON:0000161!2.64e-07!35;UBERON:0007196!6.78e-07!14;UBERON:0001558!6.78e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;5.49e-21;3!UBERON:0002031;5.49e-21;3!UBERON:0001949;1.37e-19;3!UBERON:0002185;8.21e-13;5!UBERON:0005631;5.40e-11;10!UBERON:0000158;5.40e-11;10!UBERON:0004807;3.23e-10;22!UBERON:0003124;6.84e-10;3!UBERON:0000920;6.84e-10;3!UBERON:0000478;2.06e-09;24!UBERON:0000485;2.76e-09;7!UBERON:0000486;8.61e-09;12!UBERON:0003929;1.05e-08;7!UBERON:0000161;3.45e-08;19!UBERON:0000166;3.45e-08;19!UBERON:0000165;8.98e-08;28!UBERON:0003350;1.13e-07;8!UBERON:0001828;1.13e-07;8!UBERON:0005911;1.82e-07;36!UBERON:0007196;2.05e-07;15!UBERON:0001558;2.05e-07;15!UBERON:0001911;2.10e-07;4!UBERON:0001987;2.67e-07;4!UBERON:0000964;2.67e-07;4!UBERON:0010409;2.67e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,5.68e-21,3;UBERON:0002031,5.68e-21,3;UBERON:0001949,1.09e-19,3;UBERON:0005631,1.48e-16,14;UBERON:0000158,1.48e-16,14;UBERON:0003124,3.39e-15,7;UBERON:0002185,8.38e-13,5;UBERON:0001004,1.88e-12,74;UBERON:0004119,9.68e-11,160;UBERON:0000925,9.68e-11,160;UBERON:0006595,9.68e-11,160;UBERON:0000161,3.02e-10,36;UBERON:0000166,4.37e-10,22;UBERON:0000920,7.15e-10,3;UBERON:0005157,1.05e-09,47;UBERON:0000478,1.97e-09,24;UBERON:0004807,6.32e-08,28;UBERON:0005153,8.58e-08,37;UBERON:0003350,1.04e-07,8;UBERON:0001828,1.04e-07,8;UBERON:0000165,1.61e-07,29;UBERON:0000930,1.61e-07,29;UBERON:0007196,2.09e-07,15;UBERON:0001558,2.09e-07,15;UBERON:0001911,2.27e-07,4;UBERON:0005333,2.27e-07,4;UBERON:0008425,2.27e-07,4;UBERON:0005311,2.27e-07,4;UBERON:0001987,2.35e-07,4;UBERON:0004340,2.35e-07,4;UBERON:0000485,2.60e-07,9;UBERON:0001444,2.91e-07,49;UBERON:0000964,2.93e-07,4;UBERON:0010409,2.93e-07,4;UBERON:0004348,2.93e-07,4;UBERON:0005427,2.93e-07,4;UBERON:0000065,8.66e-07,54 | |||
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| ||
|short_description=p6@KRT6A | |short_description=p6@KRT6A | ||
}} | }} |
Latest revision as of 22:52, 18 September 2015
Short description: | p6@KRT6A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_KRT6A_5end |
Coexpression cluster: | C594_Keratinocyte_Placental_amniotic_Esophageal_tongue_Corneal_Prostate |
Association with transcript: | 0bp_to_ENST00000549898_5end |
EntrezGene: | KRT6A |
HGNC: | 6443 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.79e-27 | 42 |
respiratory epithelial cell | 2.28e-24 | 13 |
bronchial epithelial cell | 5.68e-21 | 3 |
gingival epithelial cell | 1.09e-19 | 3 |
endodermal cell | 3.90e-19 | 58 |
corneal epithelial cell | 1.19e-13 | 2 |
epithelial cell of tracheobronchial tree | 2.73e-12 | 9 |
epithelial cell of lower respiratory tract | 2.73e-12 | 9 |
extraembryonic cell | 4.64e-12 | 19 |
epithelial cell | 3.73e-11 | 253 |
chorionic membrane mesenchymal stem cell | 7.15e-10 | 3 |
placental epithelial cell | 1.57e-09 | 3 |
acinar cell of salivary gland | 1.64e-09 | 3 |
epithelial cell of prostate | 2.97e-09 | 3 |
epithelial cell of alimentary canal | 8.24e-08 | 20 |
mammary gland epithelial cell | 2.27e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 5.68e-21 | 3 |
epithelium of bronchus | 5.68e-21 | 3 |
gingival epithelium | 1.09e-19 | 3 |
extraembryonic membrane | 1.48e-16 | 14 |
membranous layer | 1.48e-16 | 14 |
chorion | 3.39e-15 | 7 |
bronchus | 8.38e-13 | 5 |
respiratory system | 1.88e-12 | 74 |
endoderm-derived structure | 9.68e-11 | 160 |
endoderm | 9.68e-11 | 160 |
presumptive endoderm | 9.68e-11 | 160 |
orifice | 3.02e-10 | 36 |
oral opening | 4.37e-10 | 22 |
egg chorion | 7.15e-10 | 3 |
epithelial fold | 1.05e-09 | 47 |
extraembryonic structure | 1.97e-09 | 24 |
respiratory system epithelium | 6.32e-08 | 28 |
epithelial bud | 8.58e-08 | 37 |
epithelium of mucosa | 1.04e-07 | 8 |
gingiva | 1.04e-07 | 8 |
mouth | 1.61e-07 | 29 |
stomodeum | 1.61e-07 | 29 |
tracheobronchial tree | 2.09e-07 | 15 |
lower respiratory tract | 2.09e-07 | 15 |
mammary gland | 2.27e-07 | 4 |
mammary bud | 2.27e-07 | 4 |
mammary ridge | 2.27e-07 | 4 |
mammary placode | 2.27e-07 | 4 |
placenta | 2.35e-07 | 4 |
allantois | 2.35e-07 | 4 |
simple columnar epithelium | 2.60e-07 | 9 |
subdivision of head | 2.91e-07 | 49 |
cornea | 2.93e-07 | 4 |
eye surface | 2.93e-07 | 4 |
optic eminence | 2.93e-07 | 4 |
corneal primordium | 2.93e-07 | 4 |
respiratory tract | 8.66e-07 | 54 |