FFCP PHASE1:Hg19::chr21:47532107..47532192,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1292 | |EntrezGene=1292 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2212 | |HGNC=2212 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-139bp_to_ENST00000460886_5end | |association_with_transcript=-139bp_to_ENST00000460886_5end | ||
|cluster_id=chr21:47532107..47532192,+ | |||
|coexpression_cluster_id=C198 | |coexpression_cluster_id=C198 | ||
|description=CAGE_peak_5_at_COL6A2_5end | |description=CAGE_peak_5_at_COL6A2_5end | ||
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|ontology_enrichment_celltype=CL:0000055!2.03e-44!180;CL:0000057!5.55e-24!75;CL:0000680!8.37e-21!57;CL:0000056!8.37e-21!57;CL:0000355!8.37e-21!57;CL:0000183!4.14e-20!59;CL:0000187!4.61e-20!54;CL:0000393!1.59e-18!60;CL:0000211!1.59e-18!60;CL:0000192!3.57e-15!42;CL:0000514!3.57e-15!42;CL:0000048!2.79e-12!430;CL:0000359!4.46e-12!32;CL:0000723!4.40e-11!436;CL:0000034!1.93e-10!444;CL:0002620!7.04e-09!23;CL:0000499!8.70e-08!27;CL:0000222!4.45e-07!119 | |ontology_enrichment_celltype=CL:0000055!2.03e-44!180;CL:0000057!5.55e-24!75;CL:0000680!8.37e-21!57;CL:0000056!8.37e-21!57;CL:0000355!8.37e-21!57;CL:0000183!4.14e-20!59;CL:0000187!4.61e-20!54;CL:0000393!1.59e-18!60;CL:0000211!1.59e-18!60;CL:0000192!3.57e-15!42;CL:0000514!3.57e-15!42;CL:0000048!2.79e-12!430;CL:0000359!4.46e-12!32;CL:0000723!4.40e-11!436;CL:0000034!1.93e-10!444;CL:0002620!7.04e-09!23;CL:0000499!8.70e-08!27;CL:0000222!4.45e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000187;5.14e-13;55!CL:0000192;1.41e-12;43!CL:0000359;1.57e-12;32!CL:0000057;2.26e-11;73!CL:0000393;3.71e-11;61!CL:0000211;3.71e-11;61!CL:0002620;9.31e-11;23!CL:0000134;8.43e-10;55!CL:0000723;8.49e-10;61!CL:0002320;2.07e-09;188!CL:0000048;8.58e-09;58!CL:0000499;3.44e-08;28!CL:0002570;1.73e-07;8!CL:0002334;2.96e-07;12!CL:0002494;3.58e-07;16!CL:0000034;9.26e-07;69 | |ontology_enrichment_celltype_v019=CL:0000187;5.14e-13;55!CL:0000192;1.41e-12;43!CL:0000359;1.57e-12;32!CL:0000057;2.26e-11;73!CL:0000393;3.71e-11;61!CL:0000211;3.71e-11;61!CL:0002620;9.31e-11;23!CL:0000134;8.43e-10;55!CL:0000723;8.49e-10;61!CL:0002320;2.07e-09;188!CL:0000048;8.58e-09;58!CL:0000499;3.44e-08;28!CL:0002570;1.73e-07;8!CL:0002334;2.96e-07;12!CL:0002494;3.58e-07;16!CL:0000034;9.26e-07;69 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.06e-28,76;CL:0000680,2.60e-24,58;CL:0000056,2.60e-24,58;CL:0000355,2.60e-24,58;CL:0000187,2.20e-23,55;CL:0000393,8.63e-21,61;CL:0000211,8.63e-21,61;CL:0000048,1.42e-19,427;CL:0000723,1.94e-18,433;CL:0000192,2.27e-17,43;CL:0000514,2.27e-17,43;CL:0000034,5.43e-17,441;CL:0000359,3.56e-13,32;CL:0002620,7.43e-11,23;CL:0002320,4.85e-08,361;CL:0000499,4.87e-08,28;CL:0002570,1.74e-07,8;CL:0002334,2.55e-07,12;CL:0002494,2.95e-07,16;CL:0000222,6.93e-07,121 | |||
|ontology_enrichment_development_v019=CL:0000355;1.03e-12;58!CL:0000514;1.41e-12;43 | |ontology_enrichment_development_v019=CL:0000355;1.03e-12;58!CL:0000514;1.41e-12;43 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2394;2.71e-07;14 | |ontology_enrichment_disease_v019=DOID:2394;2.71e-07;14 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,3.06e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!7.14e-26!83;UBERON:0002329!7.14e-26!83;UBERON:0003077!7.14e-26!83;UBERON:0003059!7.14e-26!83;UBERON:0007282!7.14e-26!83;UBERON:0009618!7.14e-26!83;UBERON:0007285!7.14e-26!83;UBERON:0004290!1.36e-25!70;UBERON:0002385!2.13e-21!63;UBERON:0001015!2.13e-21!63;UBERON:0000383!2.13e-21!63;UBERON:0001134!5.74e-21!61;UBERON:0002036!5.74e-21!61;UBERON:0003082!5.74e-21!61;UBERON:0000486!9.10e-21!82;UBERON:0005256!1.35e-17!143;UBERON:0002100!2.64e-12!216;UBERON:0003102!2.46e-10!95;UBERON:0003104!3.72e-10!238;UBERON:0009142!3.72e-10!238;UBERON:0000475!9.57e-10!365;UBERON:0001013!2.76e-09!14;UBERON:0002199!4.59e-09!45;UBERON:0002416!4.59e-09!45;UBERON:0000481!2.57e-08!347;UBERON:0004872!2.62e-08!84;UBERON:0007100!1.77e-07!27;UBERON:0001637!2.99e-07!42;UBERON:0003509!2.99e-07!42;UBERON:0004572!2.99e-07!42;UBERON:0004573!3.04e-07!33;UBERON:0004571!3.04e-07!33;UBERON:0000948!3.21e-07!24;UBERON:0005498!3.21e-07!24;UBERON:0004140!3.21e-07!24;UBERON:0009881!3.21e-07!24;UBERON:0004141!3.21e-07!24;UBERON:0003084!3.21e-07!24;UBERON:0007005!3.21e-07!24;UBERON:0004139!3.21e-07!24;UBERON:0004291!3.21e-07!24;UBERON:0000926!8.15e-07!448;UBERON:0004120!8.15e-07!448;UBERON:0006603!8.15e-07!448 | |ontology_enrichment_uberon=UBERON:0000914!7.14e-26!83;UBERON:0002329!7.14e-26!83;UBERON:0003077!7.14e-26!83;UBERON:0003059!7.14e-26!83;UBERON:0007282!7.14e-26!83;UBERON:0009618!7.14e-26!83;UBERON:0007285!7.14e-26!83;UBERON:0004290!1.36e-25!70;UBERON:0002385!2.13e-21!63;UBERON:0001015!2.13e-21!63;UBERON:0000383!2.13e-21!63;UBERON:0001134!5.74e-21!61;UBERON:0002036!5.74e-21!61;UBERON:0003082!5.74e-21!61;UBERON:0000486!9.10e-21!82;UBERON:0005256!1.35e-17!143;UBERON:0002100!2.64e-12!216;UBERON:0003102!2.46e-10!95;UBERON:0003104!3.72e-10!238;UBERON:0009142!3.72e-10!238;UBERON:0000475!9.57e-10!365;UBERON:0001013!2.76e-09!14;UBERON:0002199!4.59e-09!45;UBERON:0002416!4.59e-09!45;UBERON:0000481!2.57e-08!347;UBERON:0004872!2.62e-08!84;UBERON:0007100!1.77e-07!27;UBERON:0001637!2.99e-07!42;UBERON:0003509!2.99e-07!42;UBERON:0004572!2.99e-07!42;UBERON:0004573!3.04e-07!33;UBERON:0004571!3.04e-07!33;UBERON:0000948!3.21e-07!24;UBERON:0005498!3.21e-07!24;UBERON:0004140!3.21e-07!24;UBERON:0009881!3.21e-07!24;UBERON:0004141!3.21e-07!24;UBERON:0003084!3.21e-07!24;UBERON:0007005!3.21e-07!24;UBERON:0004139!3.21e-07!24;UBERON:0004291!3.21e-07!24;UBERON:0000926!8.15e-07!448;UBERON:0004120!8.15e-07!448;UBERON:0006603!8.15e-07!448 | ||
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| ||
|short_description=p5@COL6A2 | |short_description=p5@COL6A2 | ||
}} | }} |
Latest revision as of 22:54, 18 September 2015
Short description: | p5@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -139bp_to_ENST00000460886_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.06e-28 | 76 |
muscle precursor cell | 2.60e-24 | 58 |
myoblast | 2.60e-24 | 58 |
multi-potent skeletal muscle stem cell | 2.60e-24 | 58 |
muscle cell | 2.20e-23 | 55 |
electrically responsive cell | 8.63e-21 | 61 |
electrically active cell | 8.63e-21 | 61 |
multi fate stem cell | 1.42e-19 | 427 |
somatic stem cell | 1.94e-18 | 433 |
smooth muscle cell | 2.27e-17 | 43 |
smooth muscle myoblast | 2.27e-17 | 43 |
stem cell | 5.43e-17 | 441 |
vascular associated smooth muscle cell | 3.56e-13 | 32 |
skin fibroblast | 7.43e-11 | 23 |
connective tissue cell | 4.85e-08 | 361 |
stromal cell | 4.87e-08 | 28 |
mesenchymal stem cell of adipose | 1.74e-07 | 8 |
preadipocyte | 2.55e-07 | 12 |
cardiocyte | 2.95e-07 | 16 |
mesodermal cell | 6.93e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.06e-07 | 14 |