FFCP PHASE1:Hg19::chr21:47545961..47545972,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1292 | |EntrezGene=1292 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2212 | |HGNC=2212 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-431bp_to_uc002zic.1_5end | |association_with_transcript=-431bp_to_uc002zic.1_5end | ||
|cluster_id=chr21:47545961..47545972,+ | |||
|coexpression_cluster_id=C198 | |coexpression_cluster_id=C198 | ||
|description=CAGE_peak_37_at_COL6A2_5end | |description=CAGE_peak_37_at_COL6A2_5end | ||
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|ontology_enrichment_celltype=CL:0000055!3.84e-36!180;CL:0000057!9.08e-25!75;CL:0000048!1.06e-16!430;CL:0000723!8.53e-16!436;CL:0000034!1.82e-15!444;CL:0002620!8.87e-14!23;CL:0000183!2.95e-12!59;CL:0000680!5.18e-12!57;CL:0000056!5.18e-12!57;CL:0000355!5.18e-12!57;CL:0000393!1.96e-11!60;CL:0000211!1.96e-11!60;CL:0000187!9.77e-11!54;CL:0002371!1.37e-09!591;CL:0002320!1.44e-09!365;CL:0002334!3.61e-08!12;CL:0000144!7.71e-08!625;CL:0000192!1.35e-07!42;CL:0000514!1.35e-07!42;CL:0000134!1.93e-07!358 | |ontology_enrichment_celltype=CL:0000055!3.84e-36!180;CL:0000057!9.08e-25!75;CL:0000048!1.06e-16!430;CL:0000723!8.53e-16!436;CL:0000034!1.82e-15!444;CL:0002620!8.87e-14!23;CL:0000183!2.95e-12!59;CL:0000680!5.18e-12!57;CL:0000056!5.18e-12!57;CL:0000355!5.18e-12!57;CL:0000393!1.96e-11!60;CL:0000211!1.96e-11!60;CL:0000187!9.77e-11!54;CL:0002371!1.37e-09!591;CL:0002320!1.44e-09!365;CL:0002334!3.61e-08!12;CL:0000144!7.71e-08!625;CL:0000192!1.35e-07!42;CL:0000514!1.35e-07!42;CL:0000134!1.93e-07!358 | ||
|ontology_enrichment_celltype_v019=CL:0002570;3.21e-13;8!CL:0000499;9.03e-11;28!CL:0000135;9.55e-11;3!CL:0000388;9.55e-11;3!CL:0002564;4.05e-09;3!CL:0000723;1.54e-07;61!CL:0002583;1.96e-07;2!CL:0002539;3.01e-07;10!CL:0000134;8.43e-07;55 | |ontology_enrichment_celltype_v019=CL:0002570;3.21e-13;8!CL:0000499;9.03e-11;28!CL:0000135;9.55e-11;3!CL:0000388;9.55e-11;3!CL:0002564;4.05e-09;3!CL:0000723;1.54e-07;61!CL:0002583;1.96e-07;2!CL:0002539;3.01e-07;10!CL:0000134;8.43e-07;55 | ||
|ontology_enrichment_celltype_v019_2=CL:0002570,2.29e-13,8;CL:0000499,6.87e-11,28;CL:0000135,1.24e-10,3;CL:0000388,1.24e-10,3;CL:0002320,4.62e-10,361;CL:0000048,3.83e-09,427;CL:0000723,7.71e-09,433;CL:0002564,9.32e-09,3;CL:0000034,1.90e-08,441;CL:0002583,1.15e-07,2;CL:0002539,1.89e-07,10;CL:0000057,2.17e-07,76;CL:0000134,2.23e-07,354 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.42e-16!83;UBERON:0002329!3.42e-16!83;UBERON:0003077!3.42e-16!83;UBERON:0003059!3.42e-16!83;UBERON:0007282!3.42e-16!83;UBERON:0009618!3.42e-16!83;UBERON:0007285!3.42e-16!83;UBERON:0004290!2.06e-15!70;UBERON:0000486!9.04e-13!82;UBERON:0002385!6.50e-12!63;UBERON:0001015!6.50e-12!63;UBERON:0000383!6.50e-12!63;UBERON:0005256!1.62e-11!143;UBERON:0001134!2.19e-11!61;UBERON:0002036!2.19e-11!61;UBERON:0003082!2.19e-11!61;UBERON:0002199!2.33e-11!45;UBERON:0002416!2.33e-11!45;UBERON:0002384!1.76e-09!375;UBERON:0002097!2.08e-09!40;UBERON:0003102!3.76e-09!95;UBERON:0002100!1.26e-08!216;UBERON:0001013!4.76e-07!14 | |ontology_enrichment_uberon=UBERON:0000914!3.42e-16!83;UBERON:0002329!3.42e-16!83;UBERON:0003077!3.42e-16!83;UBERON:0003059!3.42e-16!83;UBERON:0007282!3.42e-16!83;UBERON:0009618!3.42e-16!83;UBERON:0007285!3.42e-16!83;UBERON:0004290!2.06e-15!70;UBERON:0000486!9.04e-13!82;UBERON:0002385!6.50e-12!63;UBERON:0001015!6.50e-12!63;UBERON:0000383!6.50e-12!63;UBERON:0005256!1.62e-11!143;UBERON:0001134!2.19e-11!61;UBERON:0002036!2.19e-11!61;UBERON:0003082!2.19e-11!61;UBERON:0002199!2.33e-11!45;UBERON:0002416!2.33e-11!45;UBERON:0002384!1.76e-09!375;UBERON:0002097!2.08e-09!40;UBERON:0003102!3.76e-09!95;UBERON:0002100!1.26e-08!216;UBERON:0001013!4.76e-07!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0004905;3.03e-12;8!UBERON:0000982;3.03e-12;8!UBERON:0004770;3.03e-12;8!UBERON:0007846;9.55e-11;3!UBERON:0000043;9.55e-11;3!UBERON:0007845;9.55e-11;3!UBERON:0001013;1.26e-09;14!UBERON:0011135;2.72e-09;5!UBERON:0002216;2.72e-09;5!UBERON:0011134;2.72e-09;5!UBERON:0002209;2.72e-09;5!UBERON:0002213;2.72e-09;5!UBERON:0007844;2.72e-09;5!UBERON:0011138;2.72e-09;5!UBERON:0001130;2.72e-09;5!UBERON:0001066;2.72e-09;5!UBERON:0001468;2.72e-09;5!UBERON:0002242;4.05e-09;3!UBERON:0004237;3.01e-07;10!UBERON:0004695;3.01e-07;10!UBERON:0002111;3.01e-07;10!UBERON:0004178;3.01e-07;10!UBERON:0002384;5.89e-07;198 | |ontology_enrichment_uberon_v019=UBERON:0004905;3.03e-12;8!UBERON:0000982;3.03e-12;8!UBERON:0004770;3.03e-12;8!UBERON:0007846;9.55e-11;3!UBERON:0000043;9.55e-11;3!UBERON:0007845;9.55e-11;3!UBERON:0001013;1.26e-09;14!UBERON:0011135;2.72e-09;5!UBERON:0002216;2.72e-09;5!UBERON:0011134;2.72e-09;5!UBERON:0002209;2.72e-09;5!UBERON:0002213;2.72e-09;5!UBERON:0007844;2.72e-09;5!UBERON:0011138;2.72e-09;5!UBERON:0001130;2.72e-09;5!UBERON:0001066;2.72e-09;5!UBERON:0001468;2.72e-09;5!UBERON:0002242;4.05e-09;3!UBERON:0004237;3.01e-07;10!UBERON:0004695;3.01e-07;10!UBERON:0002111;3.01e-07;10!UBERON:0004178;3.01e-07;10!UBERON:0002384;5.89e-07;198 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,2.60e-12,8;UBERON:0000982,2.60e-12,8;UBERON:0004770,2.60e-12,8;UBERON:0007846,1.24e-10,3;UBERON:0000043,1.24e-10,3;UBERON:0007845,1.24e-10,3;UBERON:0001013,8.38e-10,14;UBERON:0002384,1.81e-09,371;UBERON:0011135,4.40e-09,5;UBERON:0002216,4.40e-09,5;UBERON:0011134,4.40e-09,5;UBERON:0002209,4.40e-09,5;UBERON:0002213,4.40e-09,5;UBERON:0005856,4.40e-09,5;UBERON:0005866,4.40e-09,5;UBERON:0005863,4.40e-09,5;UBERON:0007844,4.40e-09,5;UBERON:0011138,4.40e-09,5;UBERON:0001130,4.40e-09,5;UBERON:0001066,4.40e-09,5;UBERON:0001468,4.40e-09,5;UBERON:0002242,9.32e-09,3;UBERON:0003068,9.32e-09,3;UBERON:0002328,9.32e-09,3;UBERON:0004880,9.32e-09,3;UBERON:0004237,1.89e-07,10;UBERON:0004695,1.89e-07,10;UBERON:0002111,1.89e-07,10;UBERON:0004178,1.89e-07,10 | |||
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| ||
|short_description=p37@COL6A2 | |short_description=p37@COL6A2 | ||
}} | }} |
Latest revision as of 23:07, 18 September 2015
Short description: | p37@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_37_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -431bp_to_uc002zic.1_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of adipose | 2.29e-13 | 8 |
stromal cell | 6.87e-11 | 28 |
fibrocyte | 1.24e-10 | 3 |
tendon cell | 1.24e-10 | 3 |
connective tissue cell | 4.62e-10 | 361 |
multi fate stem cell | 3.83e-09 | 427 |
somatic stem cell | 7.71e-09 | 433 |
nucleus pulposus cell of intervertebral disc | 9.32e-09 | 3 |
stem cell | 1.90e-08 | 441 |
subcutaneous preadipocyte | 1.15e-07 | 2 |
aortic smooth muscle cell | 1.89e-07 | 10 |
fibroblast | 2.17e-07 | 76 |
mesenchymal cell | 2.23e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
articulation | 2.60e-12 | 8 |
skeletal joint | 2.60e-12 | 8 |
articular system | 2.60e-12 | 8 |
dense regular connective tissue | 1.24e-10 | 3 |
tendon | 1.24e-10 | 3 |
regular connective tissue | 1.24e-10 | 3 |
adipose tissue | 8.38e-10 | 14 |
connective tissue | 1.81e-09 | 371 |
intervertebral cartilage | 4.40e-09 | 5 |
symphysis | 4.40e-09 | 5 |
nonsynovial joint | 4.40e-09 | 5 |
fibrous joint | 4.40e-09 | 5 |
cartilaginous joint | 4.40e-09 | 5 |
developing mesenchymal condensation | 4.40e-09 | 5 |
pre-cartilage condensation | 4.40e-09 | 5 |
cartilaginous condensation | 4.40e-09 | 5 |
cartilage element | 4.40e-09 | 5 |
post-cranial axial skeletal system | 4.40e-09 | 5 |
vertebral column | 4.40e-09 | 5 |
intervertebral disk | 4.40e-09 | 5 |
intervertebral joint | 4.40e-09 | 5 |
nucleus pulposus | 9.32e-09 | 3 |
axial mesoderm | 9.32e-09 | 3 |
notochord | 9.32e-09 | 3 |
chordamesoderm | 9.32e-09 | 3 |
blood vessel smooth muscle | 1.89e-07 | 10 |
arterial system smooth muscle | 1.89e-07 | 10 |
artery smooth muscle tissue | 1.89e-07 | 10 |
aorta smooth muscle tissue | 1.89e-07 | 10 |